Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 FBXL20-202ENST00000394294 2309 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
COL18A1P39060 MRPS22-212ENST00000495075 1547 ntAPPRIS P2 TSL 1 (best) BASIC22.03■■□□□ 1.12
COL18A1P39060 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC22.03■■□□□ 1.12
COL18A1P39060 OSGIN1-202ENST00000361711 2230 ntAPPRIS P1 TSL 2 BASIC22.03■■□□□ 1.12
COL18A1P39060 PXK-206ENST00000463280 2825 ntTSL 2 BASIC22.03■■□□□ 1.12
COL18A1P39060 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
COL18A1P39060 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
COL18A1P39060 ARID5A-201ENST00000357485 2188 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
COL18A1P39060 FOXR1-201ENST00000317011 1159 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
COL18A1P39060 CLCN6-207ENST00000376497 814 ntTSL 3 BASIC22.03■■□□□ 1.12
COL18A1P39060 RAC2-203ENST00000405484 842 ntAPPRIS ALT1 TSL 3 BASIC22.03■■□□□ 1.12
COL18A1P39060 MACROD2-AS1-201ENST00000439451 1230 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
COL18A1P39060 AC099552.3-201ENST00000454149 367 ntTSL 3 BASIC22.03■■□□□ 1.12
COL18A1P39060 ZSCAN2-213ENST00000541040 965 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
COL18A1P39060 APOC4-201ENST00000591600 348 ntTSL 3 BASIC22.03■■□□□ 1.12
COL18A1P39060 FAM160A2-201ENST00000265978 3481 ntAPPRIS P3 TSL 1 (best) BASIC22.03■■□□□ 1.12
COL18A1P39060 NFE2-201ENST00000312156 1658 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
COL18A1P39060 DMRTC2-204ENST00000596827 1675 ntTSL 2 BASIC22.03■■□□□ 1.12
COL18A1P39060 SERPINE2-201ENST00000258405 2195 ntAPPRIS P3 TSL 1 (best) BASIC22.03■■□□□ 1.12
COL18A1P39060 IRF1-202ENST00000405885 2061 ntAPPRIS P1 TSL 5 BASIC22.02■■□□□ 1.12
COL18A1P39060 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC22.02■■□□□ 1.12
COL18A1P39060 RPS19-201ENST00000221975 500 ntTSL 3 BASIC22.02■■□□□ 1.12
COL18A1P39060 MXI1-205ENST00000393134 889 ntTSL 2 BASIC22.02■■□□□ 1.12
COL18A1P39060 RN7SL618P-201ENST00000477850 296 ntBASIC22.02■■□□□ 1.12
COL18A1P39060 AC098859.1-201ENST00000502915 1238 ntBASIC22.02■■□□□ 1.12
COL18A1P39060 AC055876.2-201ENST00000531834 546 ntBASIC22.02■■□□□ 1.12
COL18A1P39060 MAX-210ENST00000555419 765 ntTSL 5 BASIC22.02■■□□□ 1.12
COL18A1P39060 AC106886.1-201ENST00000568660 600 ntBASIC22.02■■□□□ 1.12
COL18A1P39060 FXYD6-216ENST00000584230 566 ntAPPRIS ALT1 TSL 3 BASIC22.02■■□□□ 1.12
COL18A1P39060 RPS19-202ENST00000593863 526 ntAPPRIS P1 TSL 3 BASIC22.02■■□□□ 1.12
COL18A1P39060 TAMM41-212ENST00000630288 607 ntTSL 2 BASIC22.02■■□□□ 1.12
COL18A1P39060 RAD51D-218ENST00000590016 1528 ntTSL 2 BASIC22.02■■□□□ 1.12
COL18A1P39060 LINC01148-201ENST00000557527 1763 ntTSL 1 (best) BASIC22.02■■□□□ 1.12
COL18A1P39060 PDXP-202ENST00000403251 1571 ntTSL 2 BASIC22.02■■□□□ 1.12
COL18A1P39060 TRPV4-208ENST00000544971 2295 ntTSL 1 (best) BASIC22.02■■□□□ 1.12
COL18A1P39060 MYOD1-201ENST00000250003 1801 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
COL18A1P39060 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
COL18A1P39060 AL023806.1-201ENST00000603994 1649 ntBASIC22.02■■□□□ 1.12
COL18A1P39060 FUT5-201ENST00000252675 1916 ntAPPRIS P1 BASIC22.02■■□□□ 1.12
COL18A1P39060 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
COL18A1P39060 ADAMTS16-203ENST00000511368 2682 ntTSL 1 (best) BASIC22.02■■□□□ 1.12
COL18A1P39060 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC22.02■■□□□ 1.12
COL18A1P39060 CCDC84-201ENST00000334418 1202 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.11
COL18A1P39060 MRNIP-202ENST00000376931 1004 ntAPPRIS ALT2 TSL 2 BASIC22.02■■□□□ 1.11
COL18A1P39060 SZT2-AS1-201ENST00000396885 699 ntTSL 3 BASIC22.02■■□□□ 1.11
COL18A1P39060 AP003385.5-201ENST00000533876 555 ntTSL 4 BASIC22.02■■□□□ 1.11
COL18A1P39060 RPS15-212ENST00000593052 629 ntTSL 2 BASIC22.02■■□□□ 1.11
COL18A1P39060 TRIM7-204ENST00000393319 2320 ntTSL 1 (best) BASIC22.02■■□□□ 1.11
COL18A1P39060 TUBB8P12-201ENST00000308911 1335 ntBASIC22.01■■□□□ 1.11
COL18A1P39060 TUBB7P-202ENST00000428444 1305 ntBASIC22.01■■□□□ 1.11
COL18A1P39060 TUBB8P7-204ENST00000567960 1332 ntBASIC22.01■■□□□ 1.11
COL18A1P39060 TEAD3-204ENST00000639578 1308 ntAPPRIS P2 TSL 1 (best) BASIC22.01■■□□□ 1.11
COL18A1P39060 AC009163.2-201ENST00000460606 2125 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
COL18A1P39060 CCDC130-204ENST00000586600 1922 ntAPPRIS P1 TSL 5 BASIC22.01■■□□□ 1.11
COL18A1P39060 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC22.01■■□□□ 1.11
COL18A1P39060 SHISA5-219ENST00000612611 1677 ntTSL 5 BASIC22.01■■□□□ 1.11
COL18A1P39060 HARS2-206ENST00000508522 1562 ntTSL 2 BASIC22.01■■□□□ 1.11
COL18A1P39060 P4HA2-201ENST00000166534 2230 ntAPPRIS P3 TSL 1 (best) BASIC22.01■■□□□ 1.11
COL18A1P39060 BANF1-201ENST00000312175 1155 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
COL18A1P39060 ZDHHC12-201ENST00000372663 1129 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
COL18A1P39060 C2orf76-202ENST00000409466 1150 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
COL18A1P39060 AC098850.1-201ENST00000419919 790 ntBASIC22.01■■□□□ 1.11
COL18A1P39060 DRAP1-208ENST00000532933 751 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
COL18A1P39060 EMC4-203ENST00000557879 1009 ntTSL 3 BASIC22.01■■□□□ 1.11
COL18A1P39060 5S_rRNA.22-201ENST00000614916 106 ntBASIC22.01■■□□□ 1.11
COL18A1P39060 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC22.01■■□□□ 1.11
COL18A1P39060 TRAPPC3-210ENST00000617904 1305 ntTSL 2 BASIC22.01■■□□□ 1.11
COL18A1P39060 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC22.01■■□□□ 1.11
COL18A1P39060 CHAD-201ENST00000258969 1739 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
COL18A1P39060 TOM1L2-209ENST00000540946 1420 ntTSL 2 BASIC22.01■■□□□ 1.11
COL18A1P39060 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
COL18A1P39060 RHBDF1P1-201ENST00000427504 1941 ntBASIC22■■□□□ 1.11
COL18A1P39060 SDHB-201ENST00000375499 1153 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
COL18A1P39060 AC105940.2-201ENST00000421055 380 ntTSL 3 BASIC22■■□□□ 1.11
COL18A1P39060 AC008278.1-201ENST00000431117 568 ntTSL 4 BASIC22■■□□□ 1.11
COL18A1P39060 RPS2P32-201ENST00000439199 892 ntBASIC22■■□□□ 1.11
COL18A1P39060 AL589987.1-201ENST00000453380 819 ntBASIC22■■□□□ 1.11
COL18A1P39060 STMN4-207ENST00000523048 1224 ntTSL 2 BASIC22■■□□□ 1.11
COL18A1P39060 AL606495.2-201ENST00000605867 535 ntBASIC22■■□□□ 1.11
COL18A1P39060 FLOT2-202ENST00000394908 2618 ntAPPRIS P3 TSL 1 (best) BASIC22■■□□□ 1.11
COL18A1P39060 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC22■■□□□ 1.11
COL18A1P39060 TEAD2-203ENST00000539846 1444 ntTSL 2 BASIC22■■□□□ 1.11
COL18A1P39060 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
COL18A1P39060 GBGT1-203ENST00000372040 1980 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
COL18A1P39060 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC22■■□□□ 1.11
COL18A1P39060 GNE-204ENST00000539208 2190 ntTSL 2 BASIC22■■□□□ 1.11
COL18A1P39060 PC-204ENST00000524491 1714 ntTSL 2 BASIC22■■□□□ 1.11
COL18A1P39060 EEF1B2-201ENST00000236957 844 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
COL18A1P39060 CCDC182-201ENST00000299415 832 ntAPPRIS P1 BASIC21.99■■□□□ 1.11
COL18A1P39060 PXMP4-202ENST00000344022 989 ntTSL 2 BASIC21.99■■□□□ 1.11
COL18A1P39060 IGHV3-23-201ENST00000390609 432 ntAPPRIS P1 BASIC21.99■■□□□ 1.11
COL18A1P39060 THPO-202ENST00000421442 1132 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
COL18A1P39060 AC009902.2-201ENST00000518880 620 ntTSL 4 BASIC21.99■■□□□ 1.11
COL18A1P39060 AC023310.3-201ENST00000557027 670 ntBASIC21.99■■□□□ 1.11
COL18A1P39060 AC100756.1-201ENST00000562736 682 ntBASIC21.99■■□□□ 1.11
COL18A1P39060 AC138749.3-201ENST00000567691 622 ntBASIC21.99■■□□□ 1.11
COL18A1P39060 NAA38-207ENST00000576861 556 ntTSL 3 BASIC21.99■■□□□ 1.11
COL18A1P39060 LINC01703-202ENST00000602806 595 ntTSL 3 BASIC21.99■■□□□ 1.11
COL18A1P39060 AC099568.2-201ENST00000609194 695 ntBASIC21.99■■□□□ 1.11
COL18A1P39060 AC116165.1-201ENST00000611806 668 ntBASIC21.99■■□□□ 1.11
Retrieved 100 of 98,524 protein–RNA pairs in 26 ms