Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 BRPF3-202ENST00000357641 6052 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
HOXC4P09017 AFF2-204ENST00000370458 1488 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
HOXC4P09017 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC16.46■□□□□ 0.23
HOXC4P09017 WDR90-209ENST00000547944 1672 ntTSL 2 BASIC16.46■□□□□ 0.23
HOXC4P09017 UNKL-204ENST00000389221 5116 ntAPPRIS ALT2 TSL 5 BASIC16.46■□□□□ 0.23
HOXC4P09017 UNC5C-202ENST00000504962 1789 ntTSL 2 BASIC16.46■□□□□ 0.22
HOXC4P09017 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC16.46■□□□□ 0.22
HOXC4P09017 AC093627.4-201ENST00000484550 5008 ntTSL 2 BASIC16.45■□□□□ 0.22
HOXC4P09017 AL139398.1-201ENST00000638795 1529 ntTSL 5 BASIC16.45■□□□□ 0.22
HOXC4P09017 AC026954.2-202ENST00000575474 2571 ntAPPRIS P5 TSL 5 BASIC16.45■□□□□ 0.22
HOXC4P09017 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
HOXC4P09017 PANX1-201ENST00000227638 2769 ntAPPRIS P2 TSL 1 (best) BASIC16.45■□□□□ 0.22
HOXC4P09017 EVA1A-205ENST00000410113 1747 ntAPPRIS P2 TSL 3 BASIC16.45■□□□□ 0.22
HOXC4P09017 CLDN14-204ENST00000399137 1942 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
HOXC4P09017 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC16.45■□□□□ 0.22
HOXC4P09017 TTLL10-201ENST00000379288 2114 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
HOXC4P09017 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
HOXC4P09017 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC16.45■□□□□ 0.22
HOXC4P09017 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC16.45■□□□□ 0.22
HOXC4P09017 ZBTB22-207ENST00000418724 2645 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
HOXC4P09017 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
HOXC4P09017 MYH7B-201ENST00000262873 6293 ntAPPRIS P2 TSL 1 (best) BASIC16.45■□□□□ 0.22
HOXC4P09017 RWDD3-201ENST00000263893 1078 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
HOXC4P09017 METTL26-202ENST00000338401 544 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
HOXC4P09017 MEAF6-202ENST00000373073 603 ntTSL 3 BASIC16.45■□□□□ 0.22
HOXC4P09017 NDUFAF3-203ENST00000395458 808 ntTSL 2 BASIC16.45■□□□□ 0.22
HOXC4P09017 GRTP1-AS1-201ENST00000419199 867 ntTSL 5 BASIC16.45■□□□□ 0.22
HOXC4P09017 CTDSP1-204ENST00000443891 1109 ntTSL 3 BASIC16.45■□□□□ 0.22
HOXC4P09017 SLC25A36-204ENST00000453248 1040 ntTSL 2 BASIC16.45■□□□□ 0.22
HOXC4P09017 KRT18P34-201ENST00000488218 1270 ntBASIC16.45■□□□□ 0.22
HOXC4P09017 ZIC4-214ENST00000491672 925 ntTSL 4 BASIC16.45■□□□□ 0.22
HOXC4P09017 SWI5-205ENST00000495313 466 ntAPPRIS ALT2 TSL 3 BASIC16.45■□□□□ 0.22
HOXC4P09017 KIAA0930-215ENST00000496226 589 ntTSL 5 BASIC16.45■□□□□ 0.22
HOXC4P09017 LINC02055-207ENST00000524346 706 ntTSL 3 BASIC16.45■□□□□ 0.22
HOXC4P09017 TMEM263-206ENST00000550344 925 ntAPPRIS P1 TSL 2 BASIC16.45■□□□□ 0.22
HOXC4P09017 AC005306.1-201ENST00000587498 661 ntTSL 3 BASIC16.45■□□□□ 0.22
HOXC4P09017 AC005759.1-201ENST00000594805 855 ntTSL 3 BASIC16.45■□□□□ 0.22
HOXC4P09017 LINC00628-201ENST00000628516 1289 ntBASIC16.45■□□□□ 0.22
HOXC4P09017 FHAD1-205ENST00000375997 1459 ntTSL 3 BASIC16.45■□□□□ 0.22
HOXC4P09017 PPA2-201ENST00000341695 1684 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
HOXC4P09017 AC016027.1-202ENST00000607927 1699 ntBASIC16.45■□□□□ 0.22
HOXC4P09017 TULP2-201ENST00000221399 1754 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
HOXC4P09017 GPX3-210ENST00000622181 1757 ntAPPRIS ALT1 TSL 5 BASIC16.45■□□□□ 0.22
HOXC4P09017 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC16.45■□□□□ 0.22
HOXC4P09017 SCARB1-203ENST00000415380 2731 ntTSL 2 BASIC16.45■□□□□ 0.22
HOXC4P09017 INSIG1-203ENST00000344756 2623 ntTSL 5 BASIC16.45■□□□□ 0.22
HOXC4P09017 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC16.45■□□□□ 0.22
HOXC4P09017 ZFAND6-201ENST00000261749 1814 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
HOXC4P09017 THAP8-201ENST00000292894 1825 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
HOXC4P09017 GPS1-228ENST00000624957 1825 ntAPPRIS ALT1 TSL 5 BASIC16.45■□□□□ 0.22
HOXC4P09017 TPGS2-220ENST00000610723 1426 ntTSL 3 BASIC16.45■□□□□ 0.22
HOXC4P09017 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC16.44■□□□□ 0.22
HOXC4P09017 TAL1-202ENST00000371884 4642 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
HOXC4P09017 ISLR2-210ENST00000565540 2780 ntAPPRIS P1 TSL 4 BASIC16.44■□□□□ 0.22
HOXC4P09017 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
HOXC4P09017 NPM2-203ENST00000397940 1874 ntAPPRIS P2 TSL 2 BASIC16.44■□□□□ 0.22
HOXC4P09017 PROC-201ENST00000234071 1773 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
HOXC4P09017 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC16.44■□□□□ 0.22
HOXC4P09017 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC16.44■□□□□ 0.22
HOXC4P09017 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC16.44■□□□□ 0.22
HOXC4P09017 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC16.44■□□□□ 0.22
HOXC4P09017 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC16.44■□□□□ 0.22
HOXC4P09017 BCL2L12-203ENST00000441864 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
HOXC4P09017 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC16.44■□□□□ 0.22
HOXC4P09017 ARHGEF18-202ENST00000359920 5733 ntAPPRIS ALT2 TSL 2 BASIC16.44■□□□□ 0.22
HOXC4P09017 SPCS1-201ENST00000233025 1082 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
HOXC4P09017 PDCD2L-201ENST00000246535 1171 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
HOXC4P09017 PSMG3-201ENST00000252329 1007 ntAPPRIS P1 TSL 3 BASIC16.44■□□□□ 0.22
HOXC4P09017 PENK-201ENST00000314922 1199 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
HOXC4P09017 TPM2-201ENST00000329305 1018 ntAPPRIS ALT1 TSL 2 BASIC16.44■□□□□ 0.22
HOXC4P09017 PTMS-202ENST00000389462 773 ntTSL 2 BASIC16.44■□□□□ 0.22
HOXC4P09017 PNMT-202ENST00000394246 821 ntTSL 2 BASIC16.44■□□□□ 0.22
HOXC4P09017 PCAT6-201ENST00000417262 748 ntTSL 2 BASIC16.44■□□□□ 0.22
HOXC4P09017 MIPEPP3-202ENST00000424756 347 ntTSL 3 BASIC16.44■□□□□ 0.22
HOXC4P09017 RNASEK-207ENST00000552842 595 ntTSL 3 BASIC16.44■□□□□ 0.22
HOXC4P09017 AC004449.1-201ENST00000564240 433 ntBASIC16.44■□□□□ 0.22
HOXC4P09017 LSM12-202ENST00000585388 942 ntTSL 3 BASIC16.44■□□□□ 0.22
HOXC4P09017 GRIFIN-202ENST00000614228 461 ntAPPRIS P1 TSL 5 BASIC16.44■□□□□ 0.22
HOXC4P09017 AC087645.4-201ENST00000638890 792 ntTSL 5 BASIC16.44■□□□□ 0.22
HOXC4P09017 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC16.44■□□□□ 0.22
HOXC4P09017 HCRTR1-203ENST00000403528 2003 ntAPPRIS P1 TSL 5 BASIC16.44■□□□□ 0.22
HOXC4P09017 AC092068.3-201ENST00000587894 2016 ntBASIC16.44■□□□□ 0.22
HOXC4P09017 ADCY6-206ENST00000550422 5877 ntTSL 2 BASIC16.44■□□□□ 0.22
HOXC4P09017 PHF20L1-209ENST00000395386 6237 ntAPPRIS P1 TSL 5 BASIC16.44■□□□□ 0.22
HOXC4P09017 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC16.44■□□□□ 0.22
HOXC4P09017 TACR2-202ENST00000373307 1740 ntTSL 2 BASIC16.44■□□□□ 0.22
HOXC4P09017 OSR2-209ENST00000522510 1528 ntAPPRIS P1 TSL 2 BASIC16.44■□□□□ 0.22
HOXC4P09017 BTBD11-201ENST00000280758 5767 ntAPPRIS P3 TSL 5 BASIC16.44■□□□□ 0.22
HOXC4P09017 ZNF446-201ENST00000335841 1889 ntTSL 5 BASIC16.44■□□□□ 0.22
HOXC4P09017 ADGRD2-201ENST00000334810 3244 ntAPPRIS P1 TSL 5 BASIC16.43■□□□□ 0.22
HOXC4P09017 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
HOXC4P09017 XKR8-201ENST00000373884 2692 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
HOXC4P09017 GDF5-202ENST00000374372 2572 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
HOXC4P09017 MAPKAPK3-208ENST00000621469 2563 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
HOXC4P09017 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC16.43■□□□□ 0.22
HOXC4P09017 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
HOXC4P09017 CCDC90B-202ENST00000455220 1550 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
HOXC4P09017 AC005498.3-201ENST00000596587 2045 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
HOXC4P09017 OR2C3-203ENST00000617752 2481 ntAPPRIS P1 BASIC16.43■□□□□ 0.22
HOXC4P09017 FENDRR-206ENST00000599749 2843 ntTSL 3 BASIC16.43■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 25.1 ms