Protein–RNA interactions for Protein: P02452

COL1A1, Collagen alpha-1(I) chain, humanhuman

Predicted RBP Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL1A1P02452 TUBB8P7-204ENST00000567960 1332 ntBASIC20.25■□□□□ 0.83
COL1A1P02452 SERPINB6-201ENST00000335686 1604 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
COL1A1P02452 MRPL53-201ENST00000258105 1162 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
COL1A1P02452 CKLF-203ENST00000351137 508 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
COL1A1P02452 AC016735.2-201ENST00000438736 569 ntTSL 4 BASIC20.24■□□□□ 0.83
COL1A1P02452 OARD1-208ENST00000469104 704 ntTSL 2 BASIC20.24■□□□□ 0.83
COL1A1P02452 IQSEC2-204ENST00000485377 835 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
COL1A1P02452 SMIM15-AS1-201ENST00000506902 796 ntTSL 3 BASIC20.24■□□□□ 0.83
COL1A1P02452 AC009053.3-201ENST00000567148 574 ntTSL 4 BASIC20.24■□□□□ 0.83
COL1A1P02452 RN7SL204P-201ENST00000582831 262 ntBASIC20.24■□□□□ 0.83
COL1A1P02452 KF456478.1-201ENST00000585980 472 ntTSL 3 BASIC20.24■□□□□ 0.83
COL1A1P02452 AC027307.2-201ENST00000591252 911 ntBASIC20.24■□□□□ 0.83
COL1A1P02452 AC141424.1-203ENST00000599026 887 ntTSL 5 BASIC20.24■□□□□ 0.83
COL1A1P02452 AC013467.2-201ENST00000605472 835 ntBASIC20.24■□□□□ 0.83
COL1A1P02452 OARD1-216ENST00000628419 1188 ntTSL 5 BASIC20.24■□□□□ 0.83
COL1A1P02452 PODXL-202ENST00000378555 2105 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
COL1A1P02452 P2RY6-208ENST00000540124 2351 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
COL1A1P02452 CLN3-229ENST00000567963 1452 ntTSL 5 BASIC20.24■□□□□ 0.83
COL1A1P02452 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
COL1A1P02452 TMEFF2-201ENST00000272771 2604 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
COL1A1P02452 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
COL1A1P02452 TACR2-202ENST00000373307 1740 ntTSL 2 BASIC20.24■□□□□ 0.83
COL1A1P02452 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
COL1A1P02452 ANTXRL-206ENST00000622632 1964 ntAPPRIS ALT2 TSL 5 BASIC20.24■□□□□ 0.83
COL1A1P02452 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC20.24■□□□□ 0.83
COL1A1P02452 SETD7-204ENST00000506866 1602 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
COL1A1P02452 GYG1-201ENST00000296048 1890 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
COL1A1P02452 DUOXA1-202ENST00000430224 1317 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
COL1A1P02452 SRP19-201ENST00000282999 937 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
COL1A1P02452 LINC00351-201ENST00000424926 911 ntTSL 3 BASIC20.24■□□□□ 0.83
COL1A1P02452 PLAC9P1-202ENST00000433290 400 ntTSL 2 BASIC20.24■□□□□ 0.83
COL1A1P02452 TSC22D3-213ENST00000506081 956 ntTSL 5 BASIC20.24■□□□□ 0.83
COL1A1P02452 RNF24-204ENST00000545616 1128 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
COL1A1P02452 AP001350.2-201ENST00000625104 1094 ntBASIC20.24■□□□□ 0.83
COL1A1P02452 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC20.23■□□□□ 0.83
COL1A1P02452 MUTYH-201ENST00000354383 1744 ntAPPRIS P4 TSL 1 (best) BASIC20.23■□□□□ 0.83
COL1A1P02452 HGNC:18790-211ENST00000621129 1483 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
COL1A1P02452 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
COL1A1P02452 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC20.23■□□□□ 0.83
COL1A1P02452 KLHL33-201ENST00000344581 1863 ntTSL 5 BASIC20.23■□□□□ 0.83
COL1A1P02452 PRMT2-208ENST00000451211 1878 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
COL1A1P02452 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC20.23■□□□□ 0.83
COL1A1P02452 SLC2A6-202ENST00000371899 2528 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
COL1A1P02452 HOXC5-201ENST00000312492 1805 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
COL1A1P02452 CCDC90B-202ENST00000455220 1550 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
COL1A1P02452 AC008677.1-201ENST00000519230 1561 ntBASIC20.23■□□□□ 0.83
COL1A1P02452 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
COL1A1P02452 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
COL1A1P02452 BCAR1-201ENST00000162330 3221 ntAPPRIS P3 TSL 1 (best) BASIC20.23■□□□□ 0.83
COL1A1P02452 CSNK1G2-AS1-201ENST00000314315 1252 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
COL1A1P02452 MUC1-201ENST00000337604 859 ntAPPRIS P3 TSL 1 (best) BASIC20.23■□□□□ 0.83
COL1A1P02452 TNNC2-201ENST00000372555 710 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
COL1A1P02452 AC026202.2-201ENST00000439325 672 ntTSL 2 BASIC20.23■□□□□ 0.83
COL1A1P02452 STARD13-205ENST00000439831 945 ntTSL 2 BASIC20.23■□□□□ 0.83
COL1A1P02452 TSPY16P-201ENST00000449843 468 ntBASIC20.23■□□□□ 0.83
COL1A1P02452 FXYD1-202ENST00000455515 594 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
COL1A1P02452 ZNF667-AS1-204ENST00000588158 921 ntTSL 3 BASIC20.23■□□□□ 0.83
COL1A1P02452 AC092070.4-201ENST00000599803 507 ntTSL 5 BASIC20.23■□□□□ 0.83
COL1A1P02452 AP2A2-222ENST00000534328 1491 ntTSL 5 BASIC20.23■□□□□ 0.83
COL1A1P02452 LTBR-207ENST00000539925 1665 ntAPPRIS ALT2 TSL 2 BASIC20.23■□□□□ 0.83
COL1A1P02452 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
COL1A1P02452 AC006277.1-201ENST00000624348 1610 ntBASIC20.22■□□□□ 0.83
COL1A1P02452 CLEC18B-206ENST00000620745 1847 ntTSL 5 BASIC20.22■□□□□ 0.83
COL1A1P02452 MPP1-202ENST00000369534 2042 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
COL1A1P02452 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
COL1A1P02452 F10-202ENST00000375559 1517 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
COL1A1P02452 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
COL1A1P02452 AC063926.2-201ENST00000623766 1308 ntBASIC20.22■□□□□ 0.83
COL1A1P02452 UNC119-204ENST00000470125 2050 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
COL1A1P02452 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
COL1A1P02452 U2AF2-201ENST00000308924 1698 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
COL1A1P02452 MRGPRD-201ENST00000309106 966 ntAPPRIS P1 BASIC20.22■□□□□ 0.83
COL1A1P02452 TMEM270-201ENST00000320531 854 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
COL1A1P02452 TPM2-201ENST00000329305 1018 ntAPPRIS ALT1 TSL 2 BASIC20.22■□□□□ 0.83
COL1A1P02452 MIR346-201ENST00000362234 95 ntBASIC20.22■□□□□ 0.83
COL1A1P02452 TREML5P-201ENST00000421694 576 ntBASIC20.22■□□□□ 0.83
COL1A1P02452 TMEM176B-205ENST00000450753 1006 ntTSL 2 BASIC20.22■□□□□ 0.83
COL1A1P02452 AC106795.3-201ENST00000511650 547 ntTSL 4 BASIC20.22■□□□□ 0.83
COL1A1P02452 ZNF576-206ENST00000533118 867 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
COL1A1P02452 AC123777.1-201ENST00000534827 1247 ntTSL 3 BASIC20.22■□□□□ 0.83
COL1A1P02452 AC015712.4-202ENST00000558641 1007 ntTSL 4 BASIC20.22■□□□□ 0.83
COL1A1P02452 AC008761.3-201ENST00000624803 892 ntBASIC20.22■□□□□ 0.83
COL1A1P02452 AL023806.1-201ENST00000603994 1649 ntBASIC20.22■□□□□ 0.83
COL1A1P02452 GPR149-201ENST00000389740 2323 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
COL1A1P02452 ASAH1-231ENST00000636577 2129 ntTSL 5 BASIC20.22■□□□□ 0.83
COL1A1P02452 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC20.22■□□□□ 0.83
COL1A1P02452 EVA1A-205ENST00000410113 1747 ntAPPRIS P2 TSL 3 BASIC20.22■□□□□ 0.83
COL1A1P02452 CLEC17A-202ENST00000417570 1399 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
COL1A1P02452 FO538757.1-201ENST00000623083 1397 ntBASIC20.21■□□□□ 0.83
COL1A1P02452 ZNF446-201ENST00000335841 1889 ntTSL 5 BASIC20.21■□□□□ 0.83
COL1A1P02452 MAPKAPK3-201ENST00000357955 2500 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
COL1A1P02452 C8orf33-201ENST00000331434 2677 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
COL1A1P02452 CYP2W1-201ENST00000308919 2304 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
COL1A1P02452 SGK3-206ENST00000520976 2483 ntTSL 2 BASIC20.21■□□□□ 0.83
COL1A1P02452 ALMS1P1-202ENST00000450720 1601 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
COL1A1P02452 MIER1-204ENST00000371012 2420 ntTSL 2 BASIC20.21■□□□□ 0.83
COL1A1P02452 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
COL1A1P02452 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
COL1A1P02452 NKG7-201ENST00000221978 843 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
COL1A1P02452 CLPP-201ENST00000245816 1155 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 39.7 ms