Protein–RNA interactions for Protein: O95025

SEMA3D, Semaphorin-3D, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3DO95025 WASF1-205ENST00000392587 2675 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SEMA3DO95025 FICD-204ENST00000552695 3347 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SEMA3DO95025 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC16.3■□□□□ 0.2
SEMA3DO95025 MAST3-201ENST00000262811 5896 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SEMA3DO95025 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
SEMA3DO95025 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
SEMA3DO95025 IPPK-202ENST00000375522 882 ntTSL 3 BASIC16.3■□□□□ 0.2
SEMA3DO95025 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC16.3■□□□□ 0.2
SEMA3DO95025 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC16.3■□□□□ 0.2
SEMA3DO95025 HIST2H3DP1-201ENST00000401004 416 ntBASIC16.3■□□□□ 0.2
SEMA3DO95025 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC16.3■□□□□ 0.2
SEMA3DO95025 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC16.3■□□□□ 0.2
SEMA3DO95025 AL596442.1-201ENST00000429305 429 ntTSL 2 BASIC16.3■□□□□ 0.2
SEMA3DO95025 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
SEMA3DO95025 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC16.3■□□□□ 0.2
SEMA3DO95025 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
SEMA3DO95025 AC064853.6-201ENST00000642029 303 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
SEMA3DO95025 SYTL3-202ENST00000360448 2504 ntAPPRIS ALT1 TSL 5 BASIC16.3■□□□□ 0.2
SEMA3DO95025 POC1A-201ENST00000296484 1898 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
SEMA3DO95025 LETM2-202ENST00000379957 1873 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
SEMA3DO95025 AMMECR1-201ENST00000262844 5504 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
SEMA3DO95025 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC16.3■□□□□ 0.2
SEMA3DO95025 SLC18B1-201ENST00000275227 2368 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SEMA3DO95025 ZCCHC18-203ENST00000537356 2907 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
SEMA3DO95025 PCNP-201ENST00000265260 2342 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SEMA3DO95025 TRIM7-204ENST00000393319 2320 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
SEMA3DO95025 ISPD-201ENST00000399310 1709 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
SEMA3DO95025 GGT6-203ENST00000573591 1730 ntTSL 4 BASIC16.3■□□□□ 0.2
SEMA3DO95025 MON2-203ENST00000546600 6130 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
SEMA3DO95025 ARHGEF4-205ENST00000409359 5489 ntTSL 5 BASIC16.3■□□□□ 0.2
SEMA3DO95025 SEPT6-209ENST00000489216 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SEMA3DO95025 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC16.3■□□□□ 0.2
SEMA3DO95025 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC16.3■□□□□ 0.2
SEMA3DO95025 CHRNA5-201ENST00000299565 3623 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SEMA3DO95025 TRAPPC11-201ENST00000334690 4552 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SEMA3DO95025 NFATC4-211ENST00000554344 2955 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
SEMA3DO95025 C12orf29-201ENST00000356891 2919 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SEMA3DO95025 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
SEMA3DO95025 TRPV4-205ENST00000537083 2436 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
SEMA3DO95025 PDCD2-208ENST00000541970 3378 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SEMA3DO95025 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
SEMA3DO95025 TAOK2-203ENST00000416441 4780 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
SEMA3DO95025 CCNL2-203ENST00000408952 1857 ntTSL 5 BASIC16.29■□□□□ 0.2
SEMA3DO95025 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC16.29■□□□□ 0.2
SEMA3DO95025 RGP1-201ENST00000378078 7018 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SEMA3DO95025 GXYLT2-201ENST00000389617 3260 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
SEMA3DO95025 TDRKH-202ENST00000368823 2751 ntAPPRIS ALT1 TSL 2 BASIC16.29■□□□□ 0.2
SEMA3DO95025 DAB2IP-201ENST00000259371 5469 ntAPPRIS P4 TSL 5 BASIC16.29■□□□□ 0.2
SEMA3DO95025 HOXC5-201ENST00000312492 1805 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SEMA3DO95025 NFE2-202ENST00000435572 1762 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SEMA3DO95025 INPP4A-202ENST00000409016 9996 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SEMA3DO95025 HRASLS5-206ENST00000540857 3032 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
SEMA3DO95025 EVA1A-205ENST00000410113 1747 ntAPPRIS P2 TSL 3 BASIC16.29■□□□□ 0.2
SEMA3DO95025 STPG3-AS1-201ENST00000612170 1701 ntTSL 2 BASIC16.29■□□□□ 0.2
SEMA3DO95025 AL132857.2-201ENST00000634305 1737 ntTSL 5 BASIC16.29■□□□□ 0.2
SEMA3DO95025 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC16.29■□□□□ 0.2
SEMA3DO95025 LAGE3P1-201ENST00000425356 484 ntBASIC16.29■□□□□ 0.2
SEMA3DO95025 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC16.29■□□□□ 0.2
SEMA3DO95025 ARTN-206ENST00000472435 402 ntTSL 3 BASIC16.29■□□□□ 0.2
SEMA3DO95025 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC16.29■□□□□ 0.2
SEMA3DO95025 BMF-207ENST00000559701 630 ntTSL 3 BASIC16.29■□□□□ 0.2
SEMA3DO95025 SAXO2-206ENST00000566205 340 ntAPPRIS ALT2 TSL 2 BASIC16.29■□□□□ 0.2
SEMA3DO95025 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC16.29■□□□□ 0.2
SEMA3DO95025 TERC-201ENST00000602385 541 ntBASIC16.29■□□□□ 0.2
SEMA3DO95025 AC025062.2-201ENST00000605477 670 ntBASIC16.29■□□□□ 0.2
SEMA3DO95025 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC16.29■□□□□ 0.2
SEMA3DO95025 AC004706.3-202ENST00000621574 984 ntBASIC16.29■□□□□ 0.2
SEMA3DO95025 VAV2-201ENST00000371850 4837 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
SEMA3DO95025 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SEMA3DO95025 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SEMA3DO95025 CLPTM1-203ENST00000546079 2342 ntTSL 2 BASIC16.29■□□□□ 0.2
SEMA3DO95025 AP3D1-202ENST00000355272 5034 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
SEMA3DO95025 SLC10A3-203ENST00000393586 1893 ntTSL 5 BASIC16.29■□□□□ 0.2
SEMA3DO95025 FAM57B-201ENST00000279389 1481 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
SEMA3DO95025 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SEMA3DO95025 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
SEMA3DO95025 COL18A1-203ENST00000359759 6586 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
SEMA3DO95025 AC106886.4-201ENST00000623557 2502 ntBASIC16.28■□□□□ 0.2
SEMA3DO95025 PDE1C-201ENST00000321453 2898 ntAPPRIS ALT1 TSL 2 BASIC16.28■□□□□ 0.2
SEMA3DO95025 ALDH3A1-205ENST00000444455 1771 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
SEMA3DO95025 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC16.28■□□□□ 0.2
SEMA3DO95025 SLC7A5-201ENST00000261622 4537 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
SEMA3DO95025 RALGDS-205ENST00000393160 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
SEMA3DO95025 GDA-201ENST00000238018 2074 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
SEMA3DO95025 EVPLL-201ENST00000399134 2095 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
SEMA3DO95025 AC004943.2-201ENST00000563328 4842 ntTSL 3 BASIC16.28■□□□□ 0.2
SEMA3DO95025 AC243591.1-201ENST00000452967 1364 ntBASIC16.28■□□□□ 0.2
SEMA3DO95025 AL021920.2-201ENST00000624828 1351 ntBASIC16.28■□□□□ 0.2
SEMA3DO95025 GALNT11-205ENST00000430044 2727 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
SEMA3DO95025 GLUD1-201ENST00000277865 3039 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
SEMA3DO95025 WDR1-205ENST00000502702 1691 ntTSL 5 BASIC16.28■□□□□ 0.2
SEMA3DO95025 STAT5A-201ENST00000345506 4301 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
SEMA3DO95025 LAD1-201ENST00000367313 2336 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
SEMA3DO95025 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
SEMA3DO95025 SALL3-202ENST00000537592 6555 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
SEMA3DO95025 XKR4-203ENST00000622811 3907 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
SEMA3DO95025 CCDC187-205ENST00000638797 10126 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
SEMA3DO95025 FBXO24-206ENST00000468962 1901 ntTSL 2 BASIC16.28■□□□□ 0.2
SEMA3DO95025 SLK-201ENST00000335753 7673 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
SEMA3DO95025 TLCD1-201ENST00000292090 1017 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 52.2 ms