Protein–RNA interactions for Protein: O43633

CHMP2A, Charged multivesicular body protein 2a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP2AO43633 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC19.08■□□□□ 0.64
CHMP2AO43633 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
CHMP2AO43633 CCDC94-201ENST00000262962 1434 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
CHMP2AO43633 CALD1-204ENST00000417172 1915 ntTSL 5 BASIC19.08■□□□□ 0.64
CHMP2AO43633 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
CHMP2AO43633 KLHL33-201ENST00000344581 1863 ntTSL 5 BASIC19.07■□□□□ 0.64
CHMP2AO43633 TUBA4B-203ENST00000490341 1380 ntAPPRIS P1 TSL 2 BASIC19.07■□□□□ 0.64
CHMP2AO43633 PHF20L1-203ENST00000337920 2311 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
CHMP2AO43633 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC19.07■□□□□ 0.64
CHMP2AO43633 RNF19A-201ENST00000341084 4285 ntAPPRIS P1 TSL 5 BASIC19.07■□□□□ 0.64
CHMP2AO43633 EIF2AK4-201ENST00000263791 5499 ntAPPRIS P1 TSL 2 BASIC19.07■□□□□ 0.64
CHMP2AO43633 FLYWCH1-203ENST00000416288 4963 ntAPPRIS P3 TSL 1 (best) BASIC19.07■□□□□ 0.64
CHMP2AO43633 SEMA3B-204ENST00000433753 2755 ntAPPRIS ALT1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CHMP2AO43633 FOXS1-201ENST00000375978 1319 ntAPPRIS P1 BASIC19.07■□□□□ 0.64
CHMP2AO43633 EPHX1-206ENST00000614058 1789 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CHMP2AO43633 KIF25-202ENST00000354419 1510 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CHMP2AO43633 PRKN-202ENST00000366892 1505 ntTSL 5 BASIC19.07■□□□□ 0.64
CHMP2AO43633 TUSC3-204ENST00000506802 1546 ntTSL 5 BASIC19.07■□□□□ 0.64
CHMP2AO43633 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CHMP2AO43633 CDHR1-201ENST00000332904 2694 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
CHMP2AO43633 SFTPC-201ENST00000318561 997 ntAPPRIS P3 TSL 1 (best) BASIC19.07■□□□□ 0.64
CHMP2AO43633 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
CHMP2AO43633 CKLF-204ENST00000362093 412 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
CHMP2AO43633 PMP22-202ENST00000395936 816 ntTSL 3 BASIC19.07■□□□□ 0.64
CHMP2AO43633 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC19.07■□□□□ 0.64
CHMP2AO43633 ICAM2-202ENST00000418105 1252 ntAPPRIS P1 TSL 3 BASIC19.07■□□□□ 0.64
CHMP2AO43633 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC19.07■□□□□ 0.64
CHMP2AO43633 HNRNPA1P28-201ENST00000424481 961 ntBASIC19.07■□□□□ 0.64
CHMP2AO43633 TMEM205-202ENST00000447337 916 ntAPPRIS P1 TSL 2 BASIC19.07■□□□□ 0.64
CHMP2AO43633 AL365226.1-201ENST00000448363 349 ntTSL 2 BASIC19.07■□□□□ 0.64
CHMP2AO43633 CYB561D1-208ENST00000528785 1271 ntAPPRIS ALT1 TSL 5 BASIC19.07■□□□□ 0.64
CHMP2AO43633 AP000763.4-201ENST00000544674 752 ntTSL 5 BASIC19.07■□□□□ 0.64
CHMP2AO43633 SPATA33-208ENST00000568929 1264 ntAPPRIS ALT2 TSL 2 BASIC19.07■□□□□ 0.64
CHMP2AO43633 SLC25A3P1-206ENST00000569142 925 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
CHMP2AO43633 ICAM2-208ENST00000579788 1103 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CHMP2AO43633 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC19.07■□□□□ 0.64
CHMP2AO43633 AC099508.1-201ENST00000499110 1666 ntTSL 4 BASIC19.07■□□□□ 0.64
CHMP2AO43633 GALNT10-203ENST00000425427 4344 ntTSL 2 BASIC19.07■□□□□ 0.64
CHMP2AO43633 SCNN1A-205ENST00000396966 2336 ntTSL 3 BASIC19.07■□□□□ 0.64
CHMP2AO43633 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
CHMP2AO43633 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CHMP2AO43633 KCNQ1-201ENST00000155840 3245 ntAPPRIS P2 TSL 1 (best) BASIC19.06■□□□□ 0.64
CHMP2AO43633 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CHMP2AO43633 SAMD3-202ENST00000368134 2377 ntAPPRIS P1 TSL 2 BASIC19.06■□□□□ 0.64
CHMP2AO43633 FAM131A-207ENST00000450976 1335 ntTSL 3 BASIC19.06■□□□□ 0.64
CHMP2AO43633 ZNF84-201ENST00000327668 7162 ntAPPRIS P2 TSL 1 (best) BASIC19.06■□□□□ 0.64
CHMP2AO43633 PDX1-201ENST00000381033 2501 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CHMP2AO43633 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC19.06■□□□□ 0.64
CHMP2AO43633 GALNT11-205ENST00000430044 2727 ntAPPRIS P1 TSL 5 BASIC19.06■□□□□ 0.64
CHMP2AO43633 PPP1R16A-202ENST00000435887 2273 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CHMP2AO43633 ITGB2-AS1-202ENST00000441379 2282 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
CHMP2AO43633 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CHMP2AO43633 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC19.06■□□□□ 0.64
CHMP2AO43633 GRHPR-201ENST00000318158 1280 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CHMP2AO43633 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC19.06■□□□□ 0.64
CHMP2AO43633 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC19.06■□□□□ 0.64
CHMP2AO43633 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC19.06■□□□□ 0.64
CHMP2AO43633 SMN2-210ENST00000511812 867 ntTSL 2 BASIC19.06■□□□□ 0.64
CHMP2AO43633 OR5AH1P-202ENST00000597822 431 ntTSL 3 BASIC19.06■□□□□ 0.64
CHMP2AO43633 AC007064.4-201ENST00000637740 555 ntBASIC19.06■□□□□ 0.64
CHMP2AO43633 OPN5-206ENST00000638973 1090 ntTSL 5 BASIC19.06■□□□□ 0.64
CHMP2AO43633 IL4I1-204ENST00000595948 2407 ntAPPRIS P4 TSL 1 (best) BASIC19.06■□□□□ 0.64
CHMP2AO43633 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC19.06■□□□□ 0.64
CHMP2AO43633 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC19.06■□□□□ 0.64
CHMP2AO43633 KIF16B-203ENST00000408042 4640 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
CHMP2AO43633 SCAI-202ENST00000373549 1968 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
CHMP2AO43633 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC19.06■□□□□ 0.64
CHMP2AO43633 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC19.06■□□□□ 0.64
CHMP2AO43633 KDM4B-201ENST00000159111 5593 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CHMP2AO43633 SUZ12-201ENST00000322652 4491 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CHMP2AO43633 CDC25B-204ENST00000379598 2990 ntTSL 2 BASIC19.05■□□□□ 0.64
CHMP2AO43633 U2AF2-201ENST00000308924 1698 ntAPPRIS P3 TSL 1 (best) BASIC19.05■□□□□ 0.64
CHMP2AO43633 THEM4-201ENST00000368814 2377 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CHMP2AO43633 NRG1-216ENST00000523079 2359 ntTSL 2 BASIC19.05■□□□□ 0.64
CHMP2AO43633 ADSL-202ENST00000342312 1808 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
CHMP2AO43633 ANTXRL-206ENST00000622632 1964 ntAPPRIS ALT2 TSL 5 BASIC19.05■□□□□ 0.64
CHMP2AO43633 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC19.05■□□□□ 0.64
CHMP2AO43633 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC19.05■□□□□ 0.64
CHMP2AO43633 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
CHMP2AO43633 MOB1B-202ENST00000396051 1107 ntTSL 2 BASIC19.05■□□□□ 0.64
CHMP2AO43633 AC004832.2-201ENST00000426397 482 ntBASIC19.05■□□□□ 0.64
CHMP2AO43633 KRT73-AS1-202ENST00000551089 563 ntTSL 4 BASIC19.05■□□□□ 0.64
CHMP2AO43633 AL359317.2-203ENST00000557409 538 ntTSL 4 BASIC19.05■□□□□ 0.64
CHMP2AO43633 COX5A-206ENST00000568783 571 ntTSL 3 BASIC19.05■□□□□ 0.64
CHMP2AO43633 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
CHMP2AO43633 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC19.05■□□□□ 0.64
CHMP2AO43633 YY1-201ENST00000262238 6697 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CHMP2AO43633 DUSP8-202ENST00000397374 4480 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CHMP2AO43633 PTGDR-201ENST00000306051 2942 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CHMP2AO43633 ZDHHC8-202ENST00000334554 5046 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CHMP2AO43633 LGI4-202ENST00000392225 2891 ntTSL 5 BASIC19.05■□□□□ 0.64
CHMP2AO43633 PIGT-257ENST00000640210 1715 ntTSL 5 BASIC19.05■□□□□ 0.64
CHMP2AO43633 RAD51D-201ENST00000335858 1353 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
CHMP2AO43633 URAHP-203ENST00000517889 1381 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
CHMP2AO43633 RSRP1-201ENST00000243189 1502 ntAPPRIS P2 TSL 1 (best) BASIC19.05■□□□□ 0.64
CHMP2AO43633 MAP4K4-205ENST00000350878 7640 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
CHMP2AO43633 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC19.04■□□□□ 0.64
CHMP2AO43633 CDK19-202ENST00000368911 6246 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CHMP2AO43633 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC19.04■□□□□ 0.64
CHMP2AO43633 PML-220ENST00000569477 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 23.2 ms