Protein–RNA interactions for Protein: O14562

UBFD1, Ubiquitin domain-containing protein UBFD1, humanhuman

Known RBP Predictions only

Length 309 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBFD1O14562 AC027682.5-201ENST00000567122 530 ntTSL 3 BASIC16.49■□□□□ 0.23
UBFD1O14562 AC006538.1-201ENST00000567905 1585 ntBASIC16.49■□□□□ 0.23
UBFD1O14562 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC16.49■□□□□ 0.23
UBFD1O14562 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC16.49■□□□□ 0.23
UBFD1O14562 GEMIN7-203ENST00000591607 848 ntAPPRIS P1 TSL 3 BASIC16.49■□□□□ 0.23
UBFD1O14562 FLT3LG-206ENST00000597551 951 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
UBFD1O14562 AP001269.4-201ENST00000609611 512 ntBASIC16.49■□□□□ 0.23
UBFD1O14562 AC092119.3-201ENST00000612618 583 ntBASIC16.49■□□□□ 0.23
UBFD1O14562 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
UBFD1O14562 AL358472.4-201ENST00000633140 710 ntBASIC16.49■□□□□ 0.23
UBFD1O14562 DOC2B-203ENST00000613549 6048 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
UBFD1O14562 PPP1R21-206ENST00000449090 3049 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
UBFD1O14562 DENND6B-201ENST00000413817 4939 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
UBFD1O14562 DEF6-201ENST00000316637 2262 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
UBFD1O14562 TBC1D20-201ENST00000354200 4466 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
UBFD1O14562 UCKL1-203ENST00000369908 1954 ntAPPRIS P1 TSL 2 BASIC16.49■□□□□ 0.23
UBFD1O14562 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC16.49■□□□□ 0.23
UBFD1O14562 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC16.49■□□□□ 0.23
UBFD1O14562 FBXO4-201ENST00000281623 1682 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
UBFD1O14562 ZNF697-201ENST00000421812 5041 ntAPPRIS P1 TSL 3 BASIC16.49■□□□□ 0.23
UBFD1O14562 WDR90-209ENST00000547944 1672 ntTSL 2 BASIC16.49■□□□□ 0.23
UBFD1O14562 MEX3C-204ENST00000616921 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
UBFD1O14562 SNX19-207ENST00000528555 1506 ntTSL 2 BASIC16.49■□□□□ 0.23
UBFD1O14562 RNF19A-201ENST00000341084 4285 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
UBFD1O14562 MAIP1-202ENST00000392290 1386 ntAPPRIS P2 TSL 1 (best) BASIC16.49■□□□□ 0.23
UBFD1O14562 AC243591.1-201ENST00000452967 1364 ntBASIC16.49■□□□□ 0.23
UBFD1O14562 AL021920.2-201ENST00000624828 1351 ntBASIC16.49■□□□□ 0.23
UBFD1O14562 SLC37A4-217ENST00000545985 2606 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
UBFD1O14562 TRPC1-201ENST00000273482 4324 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
UBFD1O14562 BSG-202ENST00000346916 1605 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
UBFD1O14562 KLK3-201ENST00000326003 1463 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
UBFD1O14562 RPL3L-201ENST00000268661 2182 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
UBFD1O14562 TPD52L2-209ENST00000611972 2197 ntTSL 3 BASIC16.48■□□□□ 0.23
UBFD1O14562 RGL2-247ENST00000497454 3278 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
UBFD1O14562 NR2C2-201ENST00000323373 2406 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
UBFD1O14562 ARHGAP44-202ENST00000340825 4211 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
UBFD1O14562 ARHGAP44-203ENST00000379672 4228 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
UBFD1O14562 CALCR-207ENST00000426151 1741 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
UBFD1O14562 C10orf111-201ENST00000624760 1714 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
UBFD1O14562 C2orf54-203ENST00000402775 1958 ntAPPRIS ALT2 TSL 2 BASIC16.48■□□□□ 0.23
UBFD1O14562 ME2P1-201ENST00000426028 1970 ntBASIC16.48■□□□□ 0.23
UBFD1O14562 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
UBFD1O14562 KRT8P49-201ENST00000604166 1432 ntBASIC16.48■□□□□ 0.23
UBFD1O14562 SDC4-201ENST00000372733 2613 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
UBFD1O14562 EFEMP1-202ENST00000394555 3024 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
UBFD1O14562 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC16.48■□□□□ 0.23
UBFD1O14562 MAGI2-AS3-203ENST00000424477 520 ntTSL 4 BASIC16.48■□□□□ 0.23
UBFD1O14562 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC16.48■□□□□ 0.23
UBFD1O14562 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
UBFD1O14562 ZNF554-204ENST00000591265 1148 ntTSL 5 BASIC16.48■□□□□ 0.23
UBFD1O14562 AL353135.1-201ENST00000606729 504 ntBASIC16.48■□□□□ 0.23
UBFD1O14562 NDUFA6-204ENST00000617763 1183 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
UBFD1O14562 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
UBFD1O14562 CBFB-201ENST00000290858 3136 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
UBFD1O14562 RECQL4-210ENST00000621189 3896 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
UBFD1O14562 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
UBFD1O14562 PPAN-P2RY11-202ENST00000428358 2661 ntTSL 2 BASIC16.48■□□□□ 0.23
UBFD1O14562 CPEB3-203ENST00000614585 5789 ntAPPRIS P3 TSL 5 BASIC16.48■□□□□ 0.23
UBFD1O14562 BMI1-201ENST00000376663 3428 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
UBFD1O14562 CSAD-208ENST00000444623 2122 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
UBFD1O14562 ASAH1-231ENST00000636577 2129 ntTSL 5 BASIC16.48■□□□□ 0.23
UBFD1O14562 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC16.48■□□□□ 0.23
UBFD1O14562 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC16.48■□□□□ 0.23
UBFD1O14562 ELFN2-208ENST00000430883 1970 ntTSL 2 BASIC16.47■□□□□ 0.23
UBFD1O14562 AIFM1-202ENST00000319908 2248 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
UBFD1O14562 SLC17A7-204ENST00000600601 2237 ntTSL 2 BASIC16.47■□□□□ 0.23
UBFD1O14562 TAP2-202ENST00000374899 2497 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
UBFD1O14562 CELF3-201ENST00000290583 3246 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
UBFD1O14562 BX276092.9-201ENST00000636797 1563 ntAPPRIS ALT2 TSL 5 BASIC16.47■□□□□ 0.23
UBFD1O14562 SGO1-201ENST00000263753 2338 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
UBFD1O14562 HCG18-233ENST00000412685 2552 ntTSL 2 BASIC16.47■□□□□ 0.23
UBFD1O14562 SARAF-201ENST00000256255 2154 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
UBFD1O14562 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
UBFD1O14562 TGIF1-205ENST00000401449 1670 ntTSL 2 BASIC16.47■□□□□ 0.23
UBFD1O14562 MAP4K4-205ENST00000350878 7640 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
UBFD1O14562 APBB1-207ENST00000529519 1442 ntTSL 5 BASIC16.47■□□□□ 0.23
UBFD1O14562 AP005117.1-201ENST00000584346 1413 ntBASIC16.47■□□□□ 0.23
UBFD1O14562 ADD1-201ENST00000264758 4045 ntAPPRIS P3 TSL 5 BASIC16.47■□□□□ 0.23
UBFD1O14562 CDC42EP4-201ENST00000335793 3272 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
UBFD1O14562 AL512625.1-201ENST00000305709 2541 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
UBFD1O14562 PKD1P1-201ENST00000458669 6805 ntBASIC16.47■□□□□ 0.23
UBFD1O14562 SKIDA1-202ENST00000449193 6598 ntAPPRIS P2 TSL 3 BASIC16.47■□□□□ 0.23
UBFD1O14562 DIAPH2-205ENST00000373061 4983 ntAPPRIS ALT2 TSL 5 BASIC16.47■□□□□ 0.23
UBFD1O14562 RASL11A-201ENST00000241463 1543 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
UBFD1O14562 TAF1B-201ENST00000263663 2387 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
UBFD1O14562 CALU-205ENST00000535011 3210 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
UBFD1O14562 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
UBFD1O14562 TYMSOS-201ENST00000323813 844 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
UBFD1O14562 CREM-211ENST00000374726 1207 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
UBFD1O14562 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
UBFD1O14562 ATP5G2P1-201ENST00000433580 426 ntBASIC16.47■□□□□ 0.23
UBFD1O14562 FICD-205ENST00000552758 603 ntTSL 2 BASIC16.47■□□□□ 0.23
UBFD1O14562 TERC-201ENST00000602385 541 ntBASIC16.47■□□□□ 0.23
UBFD1O14562 AC064862.7-201ENST00000604520 867 ntBASIC16.47■□□□□ 0.23
UBFD1O14562 DNASE1L2-206ENST00000613572 1260 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
UBFD1O14562 TM9SF1-201ENST00000261789 2452 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
UBFD1O14562 GPR176-205ENST00000561100 2816 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
UBFD1O14562 TRPC3-202ENST00000379645 3548 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
UBFD1O14562 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC16.47■□□□□ 0.23
UBFD1O14562 MUL1-201ENST00000264198 2438 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 30.5 ms