Protein–RNA interactions for Protein: O00337

SLC28A1, Sodium/nucleoside cotransporter 1, humanhuman

Predictions only

Length 649 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC28A1O00337 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC16.37■□□□□ 0.21
SLC28A1O00337 RBPMS-AS1-202ENST00000519753 1031 ntTSL 5 BASIC16.37■□□□□ 0.21
SLC28A1O00337 RMI2-205ENST00000576027 818 ntTSL 2 BASIC16.37■□□□□ 0.21
SLC28A1O00337 FLT3LG-206ENST00000597551 951 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
SLC28A1O00337 ITGB1BP1-204ENST00000360635 4859 ntAPPRIS P1 TSL 5 BASIC16.37■□□□□ 0.21
SLC28A1O00337 SYT3-202ENST00000593901 2836 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
SLC28A1O00337 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC16.37■□□□□ 0.21
SLC28A1O00337 AP2A2-201ENST00000332231 4656 ntAPPRIS ALT1 TSL 1 (best) BASIC16.37■□□□□ 0.21
SLC28A1O00337 RASSF8-AS1-202ENST00000500276 2610 ntTSL 2 BASIC16.37■□□□□ 0.21
SLC28A1O00337 SSH1-201ENST00000326470 2432 ntAPPRIS ALT2 TSL 2 BASIC16.37■□□□□ 0.21
SLC28A1O00337 C15orf38-AP3S2-201ENST00000398333 2439 ntAPPRIS P1 TSL 2 BASIC16.37■□□□□ 0.21
SLC28A1O00337 LHX9-204ENST00000367391 1623 ntTSL 5 BASIC16.37■□□□□ 0.21
SLC28A1O00337 LINC00895-201ENST00000629028 1637 ntBASIC16.37■□□□□ 0.21
SLC28A1O00337 AP000347.2-202ENST00000421064 3041 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
SLC28A1O00337 LMBR1-202ENST00000359422 4727 ntTSL 5 BASIC16.37■□□□□ 0.21
SLC28A1O00337 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC16.37■□□□□ 0.21
SLC28A1O00337 CDK11B-201ENST00000340677 2534 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
SLC28A1O00337 DNAH14-206ENST00000400952 1984 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
SLC28A1O00337 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC16.36■□□□□ 0.21
SLC28A1O00337 PICALM-219ENST00000532317 3474 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
SLC28A1O00337 RAB3IP-207ENST00000483530 1755 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
SLC28A1O00337 MIB1-201ENST00000261537 9576 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
SLC28A1O00337 AL121758.1-201ENST00000488788 2714 ntAPPRIS P1 TSL 2 BASIC16.36■□□□□ 0.21
SLC28A1O00337 C16orf89-203ENST00000474471 1829 ntAPPRIS ALT2 TSL 5 BASIC16.36■□□□□ 0.21
SLC28A1O00337 LEF1-201ENST00000265165 3068 ntAPPRIS P3 TSL 1 (best) BASIC16.36■□□□□ 0.21
SLC28A1O00337 DPP6-202ENST00000377770 3710 ntAPPRIS P4 TSL 1 (best) BASIC16.36■□□□□ 0.21
SLC28A1O00337 NAT9-210ENST00000580301 1860 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
SLC28A1O00337 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC16.36■□□□□ 0.21
SLC28A1O00337 MED16-201ENST00000269814 1199 ntTSL 5 BASIC16.36■□□□□ 0.21
SLC28A1O00337 COPS8-203ENST00000409334 794 ntTSL 5 BASIC16.36■□□□□ 0.21
SLC28A1O00337 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
SLC28A1O00337 SBDSP1-202ENST00000423945 618 ntTSL 3 BASIC16.36■□□□□ 0.21
SLC28A1O00337 ZNF346-205ENST00000506693 1276 ntTSL 2 BASIC16.36■□□□□ 0.21
SLC28A1O00337 FICD-205ENST00000552758 603 ntTSL 2 BASIC16.36■□□□□ 0.21
SLC28A1O00337 AC026336.2-201ENST00000563922 763 ntTSL 2 BASIC16.36■□□□□ 0.21
SLC28A1O00337 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC16.36■□□□□ 0.21
SLC28A1O00337 MCRIP1-206ENST00000573478 1123 ntTSL 2 BASIC16.36■□□□□ 0.21
SLC28A1O00337 SRSF1-209ENST00000585096 568 ntTSL 4 BASIC16.36■□□□□ 0.21
SLC28A1O00337 AC008735.1-201ENST00000592252 802 ntTSL 5 BASIC16.36■□□□□ 0.21
SLC28A1O00337 CCDC61-202ENST00000594087 1017 ntAPPRIS ALT2 TSL 5 BASIC16.36■□□□□ 0.21
SLC28A1O00337 AC008567.3-202ENST00000619671 859 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
SLC28A1O00337 AL358472.4-201ENST00000633140 710 ntBASIC16.36■□□□□ 0.21
SLC28A1O00337 NEO1-201ENST00000261908 7088 ntAPPRIS P3 TSL 1 (best) BASIC16.36■□□□□ 0.21
SLC28A1O00337 TERT-202ENST00000334602 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
SLC28A1O00337 RECQL4-210ENST00000621189 3896 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
SLC28A1O00337 EIF4G3-212ENST00000602326 6196 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
SLC28A1O00337 EDN3-202ENST00000337938 2636 ntAPPRIS P4 TSL 1 (best) BASIC16.36■□□□□ 0.21
SLC28A1O00337 BAG5-202ENST00000337322 1960 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
SLC28A1O00337 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC16.36■□□□□ 0.21
SLC28A1O00337 RRBP1-208ENST00000470422 2070 ntTSL 2 BASIC16.36■□□□□ 0.21
SLC28A1O00337 AC006449.5-201ENST00000610658 2098 ntBASIC16.36■□□□□ 0.21
SLC28A1O00337 GGT5-203ENST00000398292 2408 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
SLC28A1O00337 RGS3-210ENST00000462143 2759 ntTSL 2 BASIC16.36■□□□□ 0.21
SLC28A1O00337 ITPK1-210ENST00000556603 3174 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
SLC28A1O00337 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
SLC28A1O00337 AP005117.1-201ENST00000584346 1413 ntBASIC16.36■□□□□ 0.21
SLC28A1O00337 TMEM39B-201ENST00000336294 1813 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
SLC28A1O00337 CES4A-206ENST00000540579 1825 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
SLC28A1O00337 TMEM229B-201ENST00000357461 4068 ntAPPRIS P1 TSL 2 BASIC16.35■□□□□ 0.21
SLC28A1O00337 AC026412.1-202ENST00000512335 2231 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
SLC28A1O00337 FTSJ1-202ENST00000348411 1892 ntAPPRIS P4 TSL 1 (best) BASIC16.35■□□□□ 0.21
SLC28A1O00337 PML-215ENST00000565898 5393 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
SLC28A1O00337 SMTNL2-201ENST00000338859 1919 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
SLC28A1O00337 SERPINB6-207ENST00000612421 1570 ntTSL 2 BASIC16.35■□□□□ 0.21
SLC28A1O00337 LAPTM4B-201ENST00000445593 3173 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
SLC28A1O00337 KIFC2-201ENST00000301332 3646 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
SLC28A1O00337 INPP4A-204ENST00000409540 3231 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
SLC28A1O00337 WT1-209ENST00000530998 2421 ntTSL 2 BASIC16.35■□□□□ 0.21
SLC28A1O00337 AC018695.7-201ENST00000624587 2492 ntBASIC16.35■□□□□ 0.21
SLC28A1O00337 CCDC43-202ENST00000457422 2058 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
SLC28A1O00337 FGFR3-208ENST00000481110 4217 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
SLC28A1O00337 AL031282.2-201ENST00000598846 5079 ntTSL 2 BASIC16.35■□□□□ 0.21
SLC28A1O00337 PXMP4-201ENST00000217398 979 ntTSL 2 BASIC16.35■□□□□ 0.21
SLC28A1O00337 CDKN1C-201ENST00000380725 1220 ntAPPRIS ALT2 TSL 2 BASIC16.35■□□□□ 0.21
SLC28A1O00337 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
SLC28A1O00337 HLA-J-202ENST00000469281 1241 ntBASIC16.35■□□□□ 0.21
SLC28A1O00337 AP002807.1-202ENST00000526897 791 ntTSL 2 BASIC16.35■□□□□ 0.21
SLC28A1O00337 PNN-202ENST00000553331 656 ntTSL 3 BASIC16.35■□□□□ 0.21
SLC28A1O00337 EIF2AK4-209ENST00000560648 687 ntTSL 3 BASIC16.35■□□□□ 0.21
SLC28A1O00337 AL353135.1-201ENST00000606729 504 ntBASIC16.35■□□□□ 0.21
SLC28A1O00337 AC091076.1-201ENST00000610741 619 ntBASIC16.35■□□□□ 0.21
SLC28A1O00337 AC092119.3-201ENST00000612618 583 ntBASIC16.35■□□□□ 0.21
SLC28A1O00337 AC027682.6-202ENST00000621378 795 ntTSL 2 BASIC16.35■□□□□ 0.21
SLC28A1O00337 PDE4C-202ENST00000355502 5979 ntAPPRIS P3 TSL 2 BASIC16.35■□□□□ 0.21
SLC28A1O00337 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC16.35■□□□□ 0.21
SLC28A1O00337 C10orf111-201ENST00000624760 1714 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
SLC28A1O00337 STAT5A-201ENST00000345506 4301 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
SLC28A1O00337 SEPT9-237ENST00000591198 2160 ntTSL 2 BASIC16.35■□□□□ 0.21
SLC28A1O00337 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC16.35■□□□□ 0.21
SLC28A1O00337 AL590787.1-201ENST00000568856 1315 ntBASIC16.35■□□□□ 0.21
SLC28A1O00337 ZNF496-201ENST00000294753 5336 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
SLC28A1O00337 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
SLC28A1O00337 DTX2-201ENST00000324432 2769 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
SLC28A1O00337 SGO1-201ENST00000263753 2338 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
SLC28A1O00337 MYEOV-203ENST00000535407 2306 ntAPPRIS ALT2 TSL 2 BASIC16.35■□□□□ 0.21
SLC28A1O00337 DARS-201ENST00000264161 2361 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
SLC28A1O00337 KRT8P49-201ENST00000604166 1432 ntBASIC16.35■□□□□ 0.21
SLC28A1O00337 CACNA1A-238ENST00000637276 7135 ntAPPRIS ALT2 TSL 5 BASIC16.35■□□□□ 0.21
SLC28A1O00337 BRIX1-201ENST00000336767 1926 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
SLC28A1O00337 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 60.3 ms