Protein–RNA interactions for Protein: A0A1B0GU29

SMIM28, Small integral membrane protein 28, humanhuman

Predictions only

Length 152 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMIM28A0A1B0GU29 PLA2G16-206ENST00000639271 957 ntTSL 5 BASIC18.12■□□□□ 0.49
SMIM28A0A1B0GU29 DDX51-202ENST00000397333 4718 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
SMIM28A0A1B0GU29 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC18.12■□□□□ 0.49
SMIM28A0A1B0GU29 ETV2-204ENST00000403402 1335 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
SMIM28A0A1B0GU29 PRMT1-202ENST00000454376 1327 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
SMIM28A0A1B0GU29 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
SMIM28A0A1B0GU29 ZNF419-201ENST00000221735 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
SMIM28A0A1B0GU29 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
SMIM28A0A1B0GU29 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
SMIM28A0A1B0GU29 PSMD5-203ENST00000373904 1538 ntTSL 2 BASIC18.12■□□□□ 0.49
SMIM28A0A1B0GU29 MFSD2B-202ENST00000406420 1528 ntAPPRIS P2 TSL 5 BASIC18.12■□□□□ 0.49
SMIM28A0A1B0GU29 HOXA5-201ENST00000222726 1657 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
SMIM28A0A1B0GU29 ADCY3-201ENST00000260600 5050 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
SMIM28A0A1B0GU29 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC18.12■□□□□ 0.49
SMIM28A0A1B0GU29 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC18.11■□□□□ 0.49
SMIM28A0A1B0GU29 SPAG9-202ENST00000357122 4761 ntAPPRIS P2 TSL 1 (best) BASIC18.11■□□□□ 0.49
SMIM28A0A1B0GU29 IRF1-202ENST00000405885 2061 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
SMIM28A0A1B0GU29 CDC42EP3-201ENST00000295324 5700 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
SMIM28A0A1B0GU29 CTRB2-201ENST00000303037 901 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
SMIM28A0A1B0GU29 ANAPC11-201ENST00000344877 918 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
SMIM28A0A1B0GU29 MRPL9-202ENST00000368830 1296 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
SMIM28A0A1B0GU29 CLIC1-208ENST00000375784 1254 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
SMIM28A0A1B0GU29 DANCR-201ENST00000411630 904 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
SMIM28A0A1B0GU29 PMS2P4-201ENST00000412466 1052 ntBASIC18.11■□□□□ 0.49
SMIM28A0A1B0GU29 AC018730.1-201ENST00000454183 327 ntTSL 3 BASIC18.11■□□□□ 0.49
SMIM28A0A1B0GU29 LEKR1-211ENST00000498839 616 ntTSL 3 BASIC18.11■□□□□ 0.49
SMIM28A0A1B0GU29 SMCO4-204ENST00000527149 472 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
SMIM28A0A1B0GU29 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC18.11■□□□□ 0.49
SMIM28A0A1B0GU29 AL135744.1-201ENST00000565098 629 ntBASIC18.11■□□□□ 0.49
SMIM28A0A1B0GU29 INO80E-210ENST00000567705 880 ntTSL 3 BASIC18.11■□□□□ 0.49
SMIM28A0A1B0GU29 ANAPC11-213ENST00000577747 672 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
SMIM28A0A1B0GU29 MIR3909-201ENST00000579518 119 ntBASIC18.11■□□□□ 0.49
SMIM28A0A1B0GU29 IRF1-211ENST00000613424 821 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
SMIM28A0A1B0GU29 AC244153.1-202ENST00000617855 482 ntTSL 3 BASIC18.11■□□□□ 0.49
SMIM28A0A1B0GU29 TRIM29-221ENST00000627238 510 ntTSL 5 BASIC18.11■□□□□ 0.49
SMIM28A0A1B0GU29 AKAP8P1-201ENST00000434743 1349 ntBASIC18.11■□□□□ 0.49
SMIM28A0A1B0GU29 ISLR2-203ENST00000435464 4259 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
SMIM28A0A1B0GU29 ALDH3A1-202ENST00000395555 1495 ntTSL 3 BASIC18.11■□□□□ 0.49
SMIM28A0A1B0GU29 SPSB2-203ENST00000519357 1496 ntTSL 2 BASIC18.11■□□□□ 0.49
SMIM28A0A1B0GU29 ATP6V1C2-204ENST00000635370 1578 ntTSL 5 BASIC18.11■□□□□ 0.49
SMIM28A0A1B0GU29 CDIP1-207ENST00000564828 1636 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
SMIM28A0A1B0GU29 PPA2-201ENST00000341695 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
SMIM28A0A1B0GU29 POC1A-201ENST00000296484 1898 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
SMIM28A0A1B0GU29 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC18.11■□□□□ 0.49
SMIM28A0A1B0GU29 AC004951.4-201ENST00000454572 2076 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
SMIM28A0A1B0GU29 IQCE-210ENST00000438376 2170 ntAPPRIS ALT2 TSL 5 BASIC18.11■□□□□ 0.49
SMIM28A0A1B0GU29 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
SMIM28A0A1B0GU29 PCDHB17P-201ENST00000539533 2393 ntBASIC18.11■□□□□ 0.49
SMIM28A0A1B0GU29 FAM210A-201ENST00000322247 4340 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
SMIM28A0A1B0GU29 CREB3L1-206ENST00000621158 2687 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
SMIM28A0A1B0GU29 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC18.1■□□□□ 0.49
SMIM28A0A1B0GU29 ASB16-AS1-201ENST00000585457 2213 ntTSL 2 BASIC18.1■□□□□ 0.49
SMIM28A0A1B0GU29 GYPC-202ENST00000356887 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
SMIM28A0A1B0GU29 SLC9A3P2-201ENST00000447821 2021 ntBASIC18.1■□□□□ 0.49
SMIM28A0A1B0GU29 KLHL33-201ENST00000344581 1863 ntTSL 5 BASIC18.1■□□□□ 0.49
SMIM28A0A1B0GU29 HPN-202ENST00000392226 1783 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
SMIM28A0A1B0GU29 U2AF2-201ENST00000308924 1698 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
SMIM28A0A1B0GU29 C12orf40-202ENST00000405531 1656 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
SMIM28A0A1B0GU29 GNRHR2-201ENST00000312753 1599 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
SMIM28A0A1B0GU29 SLC9A6-208ENST00000636206 4711 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
SMIM28A0A1B0GU29 TECR-201ENST00000215567 1171 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
SMIM28A0A1B0GU29 SMARCC2-202ENST00000347471 3839 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
SMIM28A0A1B0GU29 BLZF1-202ENST00000367807 1295 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
SMIM28A0A1B0GU29 AL109613.1-202ENST00000427243 639 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
SMIM28A0A1B0GU29 MAGI2-AS3-208ENST00000446159 670 ntTSL 3 BASIC18.1■□□□□ 0.49
SMIM28A0A1B0GU29 IQCF3-204ENST00000446775 1241 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
SMIM28A0A1B0GU29 HILS1-201ENST00000504307 1219 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
SMIM28A0A1B0GU29 SPINK2-203ENST00000506738 763 ntAPPRIS ALT2 TSL 2 BASIC18.1■□□□□ 0.49
SMIM28A0A1B0GU29 AC079140.1-201ENST00000508039 487 ntBASIC18.1■□□□□ 0.49
SMIM28A0A1B0GU29 KRTAP5-9-201ENST00000528743 1136 ntAPPRIS P1 BASIC18.1■□□□□ 0.49
SMIM28A0A1B0GU29 KRT16P2-202ENST00000579062 563 ntTSL 4 BASIC18.1■□□□□ 0.49
SMIM28A0A1B0GU29 STXBP2-222ENST00000612033 1188 ntTSL 5 BASIC18.1■□□□□ 0.49
SMIM28A0A1B0GU29 KCNQ5-212ENST00000628967 3527 ntTSL 2 BASIC18.1■□□□□ 0.49
SMIM28A0A1B0GU29 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC18.1■□□□□ 0.49
SMIM28A0A1B0GU29 PRMT2-203ENST00000355680 2688 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
SMIM28A0A1B0GU29 ERLEC1-201ENST00000185150 2433 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
SMIM28A0A1B0GU29 P2RY6-202ENST00000393590 2398 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
SMIM28A0A1B0GU29 ZBTB16-202ENST00000392996 2287 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
SMIM28A0A1B0GU29 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
SMIM28A0A1B0GU29 KDM4F-201ENST00000545950 1917 ntAPPRIS P1 BASIC18.1■□□□□ 0.49
SMIM28A0A1B0GU29 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC18.09■□□□□ 0.49
SMIM28A0A1B0GU29 EML3-212ENST00000494176 2901 ntTSL 2 BASIC18.09■□□□□ 0.49
SMIM28A0A1B0GU29 EML3-216ENST00000529309 2909 ntTSL 2 BASIC18.09■□□□□ 0.49
SMIM28A0A1B0GU29 FBXO4-202ENST00000296812 1731 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
SMIM28A0A1B0GU29 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
SMIM28A0A1B0GU29 LGMN-211ENST00000555699 1728 ntTSL 5 BASIC18.09■□□□□ 0.49
SMIM28A0A1B0GU29 RNF157-201ENST00000269391 4955 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
SMIM28A0A1B0GU29 THOP1-201ENST00000307741 4804 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
SMIM28A0A1B0GU29 NDUFV1-201ENST00000322776 1596 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
SMIM28A0A1B0GU29 MZF1-206ENST00000599369 2587 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
SMIM28A0A1B0GU29 AFF2-204ENST00000370458 1488 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
SMIM28A0A1B0GU29 CAMKV-204ENST00000466940 1475 ntTSL 2 BASIC18.09■□□□□ 0.49
SMIM28A0A1B0GU29 PHC1-212ENST00000543824 4292 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
SMIM28A0A1B0GU29 AC105339.1-201ENST00000440089 1362 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
SMIM28A0A1B0GU29 MAP4K1-203ENST00000586296 1363 ntTSL 5 BASIC18.09■□□□□ 0.49
SMIM28A0A1B0GU29 GOLGA6L17P-202ENST00000614358 1398 ntBASIC18.09■□□□□ 0.49
SMIM28A0A1B0GU29 ELP5-201ENST00000354429 1304 ntAPPRIS P2 TSL 5 BASIC18.09■□□□□ 0.49
SMIM28A0A1B0GU29 CD37-201ENST00000323906 1265 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
SMIM28A0A1B0GU29 AL139400.1-201ENST00000366220 510 ntBASIC18.09■□□□□ 0.49
SMIM28A0A1B0GU29 CDK2AP2P3-201ENST00000422476 372 ntBASIC18.09■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 26.9 ms