Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 DNAAF1-201ENST00000378553 2379 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
PCDH9Q9HC56 DGKE-204ENST00000572810 1843 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
PCDH9Q9HC56 NDUFS7-201ENST00000233627 1039 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
PCDH9Q9HC56 SMOX-204ENST00000346595 982 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
PCDH9Q9HC56 CHCHD1-201ENST00000372833 835 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
PCDH9Q9HC56 TM4SF19-TCTEX1D2-201ENST00000442633 964 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
PCDH9Q9HC56 SIGLEC30P-201ENST00000455569 941 ntBASIC17.57■□□□□ 0.4
PCDH9Q9HC56 FGFR3P6-201ENST00000457012 610 ntBASIC17.57■□□□□ 0.4
PCDH9Q9HC56 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
PCDH9Q9HC56 KLK12-203ENST00000525263 1077 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
PCDH9Q9HC56 AP000721.2-201ENST00000537170 650 ntTSL 4 BASIC17.57■□□□□ 0.4
PCDH9Q9HC56 RAP1B-228ENST00000542145 1060 ntTSL 2 BASIC17.57■□□□□ 0.4
PCDH9Q9HC56 AC005625.1-201ENST00000590304 472 ntTSL 3 BASIC17.57■□□□□ 0.4
PCDH9Q9HC56 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
PCDH9Q9HC56 CHST13-202ENST00000615522 1146 ntTSL 5 BASIC17.57■□□□□ 0.4
PCDH9Q9HC56 MAP2K3-215ENST00000627447 351 ntTSL 5 BASIC17.57■□□□□ 0.4
PCDH9Q9HC56 NPAS4-204ENST00000639555 878 ntTSL 5 BASIC17.57■□□□□ 0.4
PCDH9Q9HC56 MEG3-206ENST00000423456 1771 ntTSL 2 BASIC17.57■□□□□ 0.4
PCDH9Q9HC56 GPAT2-201ENST00000359548 2761 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
PCDH9Q9HC56 AC026412.1-202ENST00000512335 2231 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
PCDH9Q9HC56 KCNK3-201ENST00000302909 6162 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
PCDH9Q9HC56 TJP2-202ENST00000377245 4611 ntAPPRIS P4 TSL 1 (best) BASIC17.57■□□□□ 0.4
PCDH9Q9HC56 ANKRD23-203ENST00000418232 2156 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
PCDH9Q9HC56 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC17.57■□□□□ 0.4
PCDH9Q9HC56 KDM6A-213ENST00000611820 5924 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
PCDH9Q9HC56 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
PCDH9Q9HC56 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC17.57■□□□□ 0.4
PCDH9Q9HC56 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC17.57■□□□□ 0.4
PCDH9Q9HC56 WT1-209ENST00000530998 2421 ntTSL 2 BASIC17.57■□□□□ 0.4
PCDH9Q9HC56 SULT1A2-204ENST00000533150 1991 ntTSL 2 BASIC17.57■□□□□ 0.4
PCDH9Q9HC56 NRG1-216ENST00000523079 2359 ntTSL 2 BASIC17.57■□□□□ 0.4
PCDH9Q9HC56 AL356309.3-201ENST00000624132 1934 ntBASIC17.57■□□□□ 0.4
PCDH9Q9HC56 SLC8A2-201ENST00000236877 5234 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
PCDH9Q9HC56 FOXE1-201ENST00000375123 3462 ntAPPRIS P1 BASIC17.56■□□□□ 0.4
PCDH9Q9HC56 COL8A2-202ENST00000397799 4670 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
PCDH9Q9HC56 SLC22A12-205ENST00000473690 2522 ntTSL 2 BASIC17.56■□□□□ 0.4
PCDH9Q9HC56 AL645728.1-201ENST00000366221 2101 ntBASIC17.56■□□□□ 0.4
PCDH9Q9HC56 TRAF3IP1-202ENST00000391993 4003 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
PCDH9Q9HC56 AC006449.5-201ENST00000610658 2098 ntBASIC17.56■□□□□ 0.4
PCDH9Q9HC56 PLCB2-201ENST00000260402 4616 ntAPPRIS P3 TSL 2 BASIC17.56■□□□□ 0.4
PCDH9Q9HC56 MCL1-201ENST00000307940 1110 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
PCDH9Q9HC56 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
PCDH9Q9HC56 TDRD7-201ENST00000355295 3834 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
PCDH9Q9HC56 AL133410.2-201ENST00000425499 696 ntTSL 5 BASIC17.56■□□□□ 0.4
PCDH9Q9HC56 TSTD3-201ENST00000452647 962 ntAPPRIS P2 TSL 2 BASIC17.56■□□□□ 0.4
PCDH9Q9HC56 AC097372.2-201ENST00000510996 732 ntTSL 3 BASIC17.56■□□□□ 0.4
PCDH9Q9HC56 NPM2-204ENST00000518119 1190 ntAPPRIS P2 TSL 1 (best) BASIC17.56■□□□□ 0.4
PCDH9Q9HC56 IRF8-202ENST00000562492 946 ntTSL 3 BASIC17.56■□□□□ 0.4
PCDH9Q9HC56 SNHG15-203ENST00000578968 982 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
PCDH9Q9HC56 RN7SL510P-201ENST00000581311 263 ntBASIC17.56■□□□□ 0.4
PCDH9Q9HC56 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC17.56■□□□□ 0.4
PCDH9Q9HC56 AC132872.3-201ENST00000620937 629 ntTSL 5 BASIC17.56■□□□□ 0.4
PCDH9Q9HC56 AL691432.3-201ENST00000621860 400 ntBASIC17.56■□□□□ 0.4
PCDH9Q9HC56 AL139288.1-201ENST00000623748 933 ntBASIC17.56■□□□□ 0.4
PCDH9Q9HC56 ADGRB2-206ENST00000398556 4879 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
PCDH9Q9HC56 C2orf50-201ENST00000381585 2684 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
PCDH9Q9HC56 WNK1-206ENST00000535572 9886 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
PCDH9Q9HC56 VARS-215ENST00000375663 4312 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
PCDH9Q9HC56 MFSD1-202ENST00000392813 2244 ntTSL 2 BASIC17.56■□□□□ 0.4
PCDH9Q9HC56 CLDN15-208ENST00000611078 1509 ntTSL 5 BASIC17.56■□□□□ 0.4
PCDH9Q9HC56 SEPT9-237ENST00000591198 2160 ntTSL 2 BASIC17.56■□□□□ 0.4
PCDH9Q9HC56 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
PCDH9Q9HC56 STEAP3-204ENST00000409811 2103 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
PCDH9Q9HC56 SLC45A1-202ENST00000471889 2784 ntTSL 5 BASIC17.56■□□□□ 0.4
PCDH9Q9HC56 BCR-201ENST00000305877 7082 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
PCDH9Q9HC56 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
PCDH9Q9HC56 INPP5J-213ENST00000620191 2306 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
PCDH9Q9HC56 MAP3K20-203ENST00000409176 2572 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
PCDH9Q9HC56 IL12RB1-201ENST00000322153 1902 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
PCDH9Q9HC56 RGN-202ENST00000352078 1611 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
PCDH9Q9HC56 IGSF8-205ENST00000614243 2191 ntAPPRIS P2 TSL 1 (best) BASIC17.55■□□□□ 0.4
PCDH9Q9HC56 ASH1L-207ENST00000548830 1862 ntTSL 5 BASIC17.55■□□□□ 0.4
PCDH9Q9HC56 LSP1-217ENST00000612798 1881 ntAPPRIS ALT2 TSL 2 BASIC17.55■□□□□ 0.4
PCDH9Q9HC56 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
PCDH9Q9HC56 MAGI3-201ENST00000307546 6430 ntTSL 5 BASIC17.55■□□□□ 0.4
PCDH9Q9HC56 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
PCDH9Q9HC56 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC17.55■□□□□ 0.4
PCDH9Q9HC56 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC17.55■□□□□ 0.4
PCDH9Q9HC56 BX005266.1-201ENST00000473402 457 ntBASIC17.55■□□□□ 0.4
PCDH9Q9HC56 PP7080-204ENST00000510714 601 ntTSL 3 BASIC17.55■□□□□ 0.4
PCDH9Q9HC56 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
PCDH9Q9HC56 DUX4L17-201ENST00000557360 1267 ntBASIC17.55■□□□□ 0.4
PCDH9Q9HC56 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC17.55■□□□□ 0.4
PCDH9Q9HC56 NKAPP1-205ENST00000585790 367 ntBASIC17.55■□□□□ 0.4
PCDH9Q9HC56 SLC1A6-208ENST00000598504 2987 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
PCDH9Q9HC56 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
PCDH9Q9HC56 DARS-201ENST00000264161 2361 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
PCDH9Q9HC56 CCDC43-202ENST00000457422 2058 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
PCDH9Q9HC56 LAPTM4B-201ENST00000445593 3173 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
PCDH9Q9HC56 REPS2-201ENST00000303843 7771 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
PCDH9Q9HC56 ERO1A-201ENST00000395686 5285 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
PCDH9Q9HC56 RGS3-210ENST00000462143 2759 ntTSL 2 BASIC17.55■□□□□ 0.4
PCDH9Q9HC56 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC17.55■□□□□ 0.4
PCDH9Q9HC56 ITGB4-201ENST00000200181 5919 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
PCDH9Q9HC56 TTC24-202ENST00000368237 1969 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
PCDH9Q9HC56 AL021453.1-201ENST00000333487 2989 ntTSL 2 BASIC17.55■□□□□ 0.4
PCDH9Q9HC56 HAGH-202ENST00000397356 2984 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
PCDH9Q9HC56 TAB1-202ENST00000331454 1660 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
PCDH9Q9HC56 GPR158-AS1-201ENST00000449643 2433 ntTSL 2 BASIC17.55■□□□□ 0.4
PCDH9Q9HC56 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC17.55■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 70.7 ms