Protein–RNA interactions for Protein: Q9H611

PIF1, ATP-dependent DNA helicase PIF1, humanhuman

Predictions only

Length 641 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PIF1Q9H611 COG5-203ENST00000393603 5418 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
PIF1Q9H611 LYPD5-202ENST00000414615 2137 ntAPPRIS P3 TSL 2 BASIC16.31■□□□□ 0.2
PIF1Q9H611 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC16.31■□□□□ 0.2
PIF1Q9H611 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC16.31■□□□□ 0.2
PIF1Q9H611 SYDE1-204ENST00000600440 3058 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
PIF1Q9H611 DKC1-213ENST00000620277 3079 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
PIF1Q9H611 HYAL1-203ENST00000395143 1522 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
PIF1Q9H611 ZNF764-202ENST00000395091 2970 ntAPPRIS ALT1 TSL 2 BASIC16.31■□□□□ 0.2
PIF1Q9H611 FZR1-202ENST00000395095 1491 ntAPPRIS ALT1 TSL 1 (best) BASIC16.31■□□□□ 0.2
PIF1Q9H611 BACE2-203ENST00000347667 8764 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
PIF1Q9H611 NADK2-206ENST00000506945 1437 ntTSL 2 BASIC16.31■□□□□ 0.2
PIF1Q9H611 SYBU-231ENST00000533065 2645 ntAPPRIS ALT2 TSL 2 BASIC16.31■□□□□ 0.2
PIF1Q9H611 NUDT6-201ENST00000304430 1169 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
PIF1Q9H611 MYCLP1-201ENST00000372451 1075 ntBASIC16.31■□□□□ 0.2
PIF1Q9H611 MIEN1-201ENST00000394231 1006 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
PIF1Q9H611 KRT18P38-201ENST00000449496 1282 ntBASIC16.31■□□□□ 0.2
PIF1Q9H611 FNDC5-205ENST00000496770 837 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
PIF1Q9H611 LY6E-213ENST00000522528 606 ntTSL 3 BASIC16.31■□□□□ 0.2
PIF1Q9H611 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC16.31■□□□□ 0.2
PIF1Q9H611 AC012645.3-201ENST00000568506 470 ntTSL 3 BASIC16.31■□□□□ 0.2
PIF1Q9H611 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC16.31■□□□□ 0.2
PIF1Q9H611 C10orf142-201ENST00000619243 1110 ntAPPRIS P2 TSL 2 BASIC16.31■□□□□ 0.2
PIF1Q9H611 SARDH-205ENST00000422262 2367 ntTSL 5 BASIC16.31■□□□□ 0.2
PIF1Q9H611 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC16.31■□□□□ 0.2
PIF1Q9H611 COPS7B-206ENST00000410017 2051 ntTSL 3 BASIC16.31■□□□□ 0.2
PIF1Q9H611 C11orf49-204ENST00000395460 1916 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
PIF1Q9H611 CRY2-211ENST00000616080 1936 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
PIF1Q9H611 ASIC1-202ENST00000447966 3778 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
PIF1Q9H611 ITM2C-201ENST00000326407 1888 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
PIF1Q9H611 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC16.31■□□□□ 0.2
PIF1Q9H611 PIGT-221ENST00000638594 1835 ntTSL 5 BASIC16.31■□□□□ 0.2
PIF1Q9H611 ARVCF-204ENST00000406522 2682 ntTSL 5 BASIC16.31■□□□□ 0.2
PIF1Q9H611 PWP1-202ENST00000541166 1722 ntTSL 2 BASIC16.31■□□□□ 0.2
PIF1Q9H611 GGT6-203ENST00000573591 1730 ntTSL 4 BASIC16.31■□□□□ 0.2
PIF1Q9H611 MMP15-201ENST00000219271 4250 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
PIF1Q9H611 TM9SF1-201ENST00000261789 2452 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
PIF1Q9H611 ZXDA-201ENST00000358697 4113 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
PIF1Q9H611 AIFM3-202ENST00000399167 2387 ntAPPRIS P3 TSL 2 BASIC16.3■□□□□ 0.2
PIF1Q9H611 AIFM3-207ENST00000440238 2368 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
PIF1Q9H611 TDRD6-203ENST00000544460 8887 ntAPPRIS ALT2 TSL 2 BASIC16.3■□□□□ 0.2
PIF1Q9H611 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
PIF1Q9H611 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC16.3■□□□□ 0.2
PIF1Q9H611 BATF2-201ENST00000301887 2142 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
PIF1Q9H611 ADAM15-228ENST00000531455 2678 ntAPPRIS ALT2 TSL 2 BASIC16.3■□□□□ 0.2
PIF1Q9H611 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC16.3■□□□□ 0.2
PIF1Q9H611 PAX3-201ENST00000258387 958 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
PIF1Q9H611 VKORC1-205ENST00000394975 1012 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
PIF1Q9H611 KRT18P21-201ENST00000515767 1272 ntBASIC16.3■□□□□ 0.2
PIF1Q9H611 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC16.3■□□□□ 0.2
PIF1Q9H611 NME3-204ENST00000563498 920 ntTSL 2 BASIC16.3■□□□□ 0.2
PIF1Q9H611 DCTN5-208ENST00000568589 772 ntTSL 2 BASIC16.3■□□□□ 0.2
PIF1Q9H611 AC010531.1-201ENST00000568879 953 ntAPPRIS P1 TSL 4 BASIC16.3■□□□□ 0.2
PIF1Q9H611 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC16.3■□□□□ 0.2
PIF1Q9H611 AC020911.2-202ENST00000588945 593 ntTSL 3 BASIC16.3■□□□□ 0.2
PIF1Q9H611 AL390719.2-201ENST00000606993 987 ntBASIC16.3■□□□□ 0.2
PIF1Q9H611 AL590326.2-201ENST00000625139 305 ntBASIC16.3■□□□□ 0.2
PIF1Q9H611 SIL1-201ENST00000265195 1895 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
PIF1Q9H611 OSBPL1A-203ENST00000399441 1887 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
PIF1Q9H611 BNIP2-212ENST00000607373 1851 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
PIF1Q9H611 MINDY1-201ENST00000312210 2400 ntTSL 2 BASIC16.3■□□□□ 0.2
PIF1Q9H611 PPP1R21-206ENST00000449090 3049 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
PIF1Q9H611 FADS2-202ENST00000278840 3630 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
PIF1Q9H611 USP43-201ENST00000285199 4169 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
PIF1Q9H611 GP5-201ENST00000401815 3534 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
PIF1Q9H611 ITGA7-202ENST00000347027 4084 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
PIF1Q9H611 NEUROD1-201ENST00000295108 2852 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
PIF1Q9H611 TUBGCP2-204ENST00000417178 4029 ntTSL 2 BASIC16.3■□□□□ 0.2
PIF1Q9H611 ROBO3-201ENST00000397801 4569 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
PIF1Q9H611 ROBO3-220ENST00000538940 4551 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
PIF1Q9H611 AMZ2P1-202ENST00000430983 3425 ntTSL 2 BASIC16.3■□□□□ 0.2
PIF1Q9H611 RASGRF1-202ENST00000419573 6294 ntTSL 2 BASIC16.3■□□□□ 0.2
PIF1Q9H611 ELK1-203ENST00000376983 2258 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
PIF1Q9H611 BANP-204ENST00000393208 2283 ntTSL 2 BASIC16.3■□□□□ 0.2
PIF1Q9H611 ARHGAP27-208ENST00000528384 2296 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
PIF1Q9H611 ATG5-210ENST00000636437 2261 ntTSL 5 BASIC16.3■□□□□ 0.2
PIF1Q9H611 SYVN1-202ENST00000307289 2841 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
PIF1Q9H611 DMRTC2-204ENST00000596827 1675 ntTSL 2 BASIC16.3■□□□□ 0.2
PIF1Q9H611 PPP1R16B-202ENST00000373331 6106 ntTSL 5 BASIC16.3■□□□□ 0.2
PIF1Q9H611 AL353608.3-201ENST00000603200 2211 ntTSL 5 BASIC16.3■□□□□ 0.2
PIF1Q9H611 FRMD6-AS1-201ENST00000617151 2229 ntBASIC16.3■□□□□ 0.2
PIF1Q9H611 PBX3-207ENST00000447726 2789 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
PIF1Q9H611 DACT1-202ENST00000395153 3734 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
PIF1Q9H611 ZFP41-201ENST00000330701 4797 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
PIF1Q9H611 STT3B-201ENST00000295770 4248 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
PIF1Q9H611 ALK-201ENST00000389048 6220 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
PIF1Q9H611 CCDC43-202ENST00000457422 2058 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
PIF1Q9H611 AP001781.3-201ENST00000622211 2939 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
PIF1Q9H611 GNAQ-201ENST00000286548 6539 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
PIF1Q9H611 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
PIF1Q9H611 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC16.29■□□□□ 0.2
PIF1Q9H611 ZFAND5-204ENST00000376960 2686 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
PIF1Q9H611 HDHD2-201ENST00000300605 2212 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
PIF1Q9H611 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
PIF1Q9H611 UBC-206ENST00000538617 1303 ntTSL 5 BASIC16.29■□□□□ 0.2
PIF1Q9H611 C2orf27B-201ENST00000623129 1325 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
PIF1Q9H611 FAM189B-202ENST00000361361 3082 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
PIF1Q9H611 GPER1-202ENST00000397088 2639 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
PIF1Q9H611 RHEBL1-201ENST00000301068 1210 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
PIF1Q9H611 HBZP1-201ENST00000354915 429 ntBASIC16.29■□□□□ 0.2
PIF1Q9H611 AC004540.1-203ENST00000421862 907 ntTSL 5 BASIC16.29■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 49.7 ms