Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 GALE-216ENST00000617979 1566 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
COL12A1Q99715 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC14.65□□□□□ -0.06
COL12A1Q99715 PSMA1-209ENST00000530457 1527 ntTSL 5 BASIC14.65□□□□□ -0.06
COL12A1Q99715 POMK-203ENST00000614426 1527 ntAPPRIS P1 TSL 4 BASIC14.65□□□□□ -0.06
COL12A1Q99715 IFNL2-201ENST00000331982 737 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
COL12A1Q99715 FAM104B-202ENST00000358460 1179 ntAPPRIS P3 TSL 1 (best) BASIC14.65□□□□□ -0.06
COL12A1Q99715 AC005229.1-201ENST00000392885 409 ntBASIC14.65□□□□□ -0.06
COL12A1Q99715 MORN2-204ENST00000409665 648 ntAPPRIS P1 TSL 5 BASIC14.65□□□□□ -0.06
COL12A1Q99715 MTND6P24-201ENST00000440466 518 ntBASIC14.65□□□□□ -0.06
COL12A1Q99715 RPL7P3-201ENST00000441388 714 ntBASIC14.65□□□□□ -0.06
COL12A1Q99715 BTNL8-205ENST00000505126 1294 ntTSL 2 BASIC14.65□□□□□ -0.06
COL12A1Q99715 AC105233.2-201ENST00000523697 349 ntBASIC14.65□□□□□ -0.06
COL12A1Q99715 FLJ27354-203ENST00000526694 851 ntTSL 2 BASIC14.65□□□□□ -0.06
COL12A1Q99715 AF228730.5-201ENST00000530288 346 ntBASIC14.65□□□□□ -0.06
COL12A1Q99715 AKIP1-210ENST00000534147 1022 ntAPPRIS P3 TSL 1 (best) BASIC14.65□□□□□ -0.06
COL12A1Q99715 AC010491.1-203ENST00000564167 638 ntTSL 2 BASIC14.65□□□□□ -0.06
COL12A1Q99715 AC007611.1-201ENST00000568150 826 ntTSL 2 BASIC14.65□□□□□ -0.06
COL12A1Q99715 AC004477.1-202ENST00000584428 539 ntTSL 2 BASIC14.65□□□□□ -0.06
COL12A1Q99715 AL354740.1-203ENST00000593917 424 ntTSL 3 BASIC14.65□□□□□ -0.06
COL12A1Q99715 AC007431.3-201ENST00000623221 587 ntBASIC14.65□□□□□ -0.06
COL12A1Q99715 ADPGK-AS1-201ENST00000563592 2730 ntTSL 2 BASIC14.65□□□□□ -0.06
COL12A1Q99715 ZNF503-201ENST00000372524 3347 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
COL12A1Q99715 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC14.65□□□□□ -0.06
COL12A1Q99715 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
COL12A1Q99715 SCNN1D-206ENST00000400928 2731 ntAPPRIS ALT2 TSL 5 BASIC14.65□□□□□ -0.06
COL12A1Q99715 CCNA1-204ENST00000630422 1751 ntAPPRIS P1 TSL 2 BASIC14.65□□□□□ -0.06
COL12A1Q99715 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
COL12A1Q99715 CD81-201ENST00000263645 1520 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
COL12A1Q99715 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC14.65□□□□□ -0.06
COL12A1Q99715 HM13-202ENST00000340852 1606 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
COL12A1Q99715 NOX4-215ENST00000534731 2156 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
COL12A1Q99715 RPS5-201ENST00000196551 740 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
COL12A1Q99715 ETFB-201ENST00000309244 900 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
COL12A1Q99715 PRDX5-203ENST00000352435 596 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
COL12A1Q99715 DUSP13-202ENST00000372700 781 ntTSL 3 BASIC14.65□□□□□ -0.06
COL12A1Q99715 DUSP13-206ENST00000472493 920 ntAPPRIS P3 TSL 1 (best) BASIC14.65□□□□□ -0.06
COL12A1Q99715 AC136475.5-202ENST00000524824 587 ntTSL 4 BASIC14.65□□□□□ -0.06
COL12A1Q99715 LITAF-210ENST00000571976 548 ntTSL 2 BASIC14.65□□□□□ -0.06
COL12A1Q99715 LITAF-214ENST00000574703 486 ntTSL 2 BASIC14.65□□□□□ -0.06
COL12A1Q99715 SNAP47-202ENST00000366759 2362 ntAPPRIS P3 TSL 1 (best) BASIC14.65□□□□□ -0.06
COL12A1Q99715 TGDS-201ENST00000261296 1905 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
COL12A1Q99715 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
COL12A1Q99715 AC053503.2-201ENST00000420563 1598 ntTSL 2 BASIC14.65□□□□□ -0.06
COL12A1Q99715 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
COL12A1Q99715 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC14.65□□□□□ -0.06
COL12A1Q99715 AL583722.1-201ENST00000540171 1307 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
COL12A1Q99715 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
COL12A1Q99715 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
COL12A1Q99715 UPK3A-201ENST00000216211 1051 ntAPPRIS P3 TSL 1 (best) BASIC14.64□□□□□ -0.07
COL12A1Q99715 C2orf40-201ENST00000238044 789 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
COL12A1Q99715 RBM8A-201ENST00000369307 796 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
COL12A1Q99715 HINT2P1-201ENST00000419438 481 ntBASIC14.64□□□□□ -0.07
COL12A1Q99715 AC074194.1-201ENST00000505025 622 ntTSL 4 BASIC14.64□□□□□ -0.07
COL12A1Q99715 AC099795.1-202ENST00000640492 759 ntTSL 5 BASIC14.64□□□□□ -0.07
COL12A1Q99715 SLC35G6-201ENST00000412468 1697 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
COL12A1Q99715 CROCCP3-202ENST00000420820 1947 ntBASIC14.64□□□□□ -0.07
COL12A1Q99715 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC14.64□□□□□ -0.07
COL12A1Q99715 SIGLEC7-201ENST00000305628 1469 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
COL12A1Q99715 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
COL12A1Q99715 TEX13B-201ENST00000302917 1248 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
COL12A1Q99715 NTMT1-201ENST00000372480 852 ntAPPRIS P1 TSL 3 BASIC14.64□□□□□ -0.07
COL12A1Q99715 AC106786.1-201ENST00000442777 792 ntTSL 3 BASIC14.64□□□□□ -0.07
COL12A1Q99715 C8orf46-205ENST00000480005 865 ntTSL 2 BASIC14.64□□□□□ -0.07
COL12A1Q99715 CRISPLD2-210ENST00000569090 808 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
COL12A1Q99715 ZSCAN32-210ENST00000573830 668 ntTSL 3 BASIC14.64□□□□□ -0.07
COL12A1Q99715 MRPL34-202ENST00000594999 555 ntAPPRIS P2 TSL 2 BASIC14.64□□□□□ -0.07
COL12A1Q99715 LINC01703-202ENST00000602806 595 ntTSL 3 BASIC14.64□□□□□ -0.07
COL12A1Q99715 LINC02028-216ENST00000609015 732 ntTSL 5 BASIC14.64□□□□□ -0.07
COL12A1Q99715 AC006449.3-201ENST00000620144 563 ntTSL 4 BASIC14.64□□□□□ -0.07
COL12A1Q99715 FKBP10-201ENST00000321562 2662 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
COL12A1Q99715 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
COL12A1Q99715 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC14.64□□□□□ -0.07
COL12A1Q99715 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
COL12A1Q99715 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
COL12A1Q99715 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC14.64□□□□□ -0.07
COL12A1Q99715 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC14.64□□□□□ -0.07
COL12A1Q99715 KIZ-211ENST00000619574 1971 ntAPPRIS ALT2 TSL 2 BASIC14.64□□□□□ -0.07
COL12A1Q99715 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC14.64□□□□□ -0.07
COL12A1Q99715 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
COL12A1Q99715 AC006504.5-203ENST00000590628 1335 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
COL12A1Q99715 ECSIT-209ENST00000591104 1319 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
COL12A1Q99715 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
COL12A1Q99715 GSKIP-201ENST00000438650 2140 ntAPPRIS P1 TSL 2 BASIC14.64□□□□□ -0.07
COL12A1Q99715 RTL8B-201ENST00000391440 2026 ntAPPRIS P1 BASIC14.64□□□□□ -0.07
COL12A1Q99715 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC14.64□□□□□ -0.07
COL12A1Q99715 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
COL12A1Q99715 GDPD3-202ENST00000406256 1397 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
COL12A1Q99715 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC14.64□□□□□ -0.07
COL12A1Q99715 HRAS-202ENST00000397594 1099 ntTSL 2 BASIC14.64□□□□□ -0.07
COL12A1Q99715 AL355334.1-201ENST00000417713 215 ntBASIC14.64□□□□□ -0.07
COL12A1Q99715 GTF2H2C-215ENST00000514162 610 ntTSL 5 BASIC14.64□□□□□ -0.07
COL12A1Q99715 AC016629.1-201ENST00000596579 586 ntBASIC14.64□□□□□ -0.07
COL12A1Q99715 CDC42EP4-209ENST00000630622 240 ntTSL 5 BASIC14.64□□□□□ -0.07
COL12A1Q99715 GSKIP-205ENST00000555181 2218 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
COL12A1Q99715 RNH1-205ENST00000397615 2014 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
COL12A1Q99715 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC14.64□□□□□ -0.07
COL12A1Q99715 SHISA5-219ENST00000612611 1677 ntTSL 5 BASIC14.64□□□□□ -0.07
COL12A1Q99715 MAGI2-208ENST00000522391 4878 ntAPPRIS ALT2 TSL 5 BASIC14.63□□□□□ -0.07
COL12A1Q99715 CCDC105-201ENST00000292574 1732 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
COL12A1Q99715 MAFF-206ENST00000538320 2458 ntAPPRIS P1 TSL 4 BASIC14.63□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 24.8 ms