Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 KNOP1-205ENST00000568230 1311 ntAPPRIS ALT2 TSL 5 BASIC16.46■□□□□ 0.23
CLIP3Q96DZ5 ZNF618-203ENST00000374126 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
CLIP3Q96DZ5 ARNTL2-208ENST00000544915 6785 ntAPPRIS ALT2 TSL 5 BASIC16.46■□□□□ 0.23
CLIP3Q96DZ5 RAVER2-202ENST00000371072 4362 ntAPPRIS P2 TSL 1 (best) BASIC16.46■□□□□ 0.23
CLIP3Q96DZ5 TUBGCP6-204ENST00000439308 6078 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
CLIP3Q96DZ5 BMP3-201ENST00000282701 5734 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
CLIP3Q96DZ5 MGAT1-201ENST00000307826 2761 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
CLIP3Q96DZ5 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC16.46■□□□□ 0.23
CLIP3Q96DZ5 WDR25-202ENST00000402312 1969 ntAPPRIS P1 TSL 2 BASIC16.46■□□□□ 0.23
CLIP3Q96DZ5 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
CLIP3Q96DZ5 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
CLIP3Q96DZ5 SH3BP5-206ENST00000426925 2190 ntTSL 2 BASIC16.46■□□□□ 0.23
CLIP3Q96DZ5 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
CLIP3Q96DZ5 TEX264-204ENST00000415259 2290 ntAPPRIS P3 TSL 5 BASIC16.46■□□□□ 0.23
CLIP3Q96DZ5 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
CLIP3Q96DZ5 TRA2B-202ENST00000342294 288 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
CLIP3Q96DZ5 TIMM17B-202ENST00000396779 1099 ntTSL 5 BASIC16.46■□□□□ 0.23
CLIP3Q96DZ5 C6orf226-201ENST00000408925 552 ntAPPRIS P1 BASIC16.46■□□□□ 0.23
CLIP3Q96DZ5 SCRN1-203ENST00000409570 535 ntTSL 4 BASIC16.46■□□□□ 0.23
CLIP3Q96DZ5 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC16.46■□□□□ 0.23
CLIP3Q96DZ5 AC108073.2-201ENST00000464002 357 ntBASIC16.46■□□□□ 0.23
CLIP3Q96DZ5 TRAF3IP2-AS1-208ENST00000525151 609 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
CLIP3Q96DZ5 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC16.46■□□□□ 0.23
CLIP3Q96DZ5 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC16.46■□□□□ 0.23
CLIP3Q96DZ5 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC16.46■□□□□ 0.23
CLIP3Q96DZ5 AC104758.1-202ENST00000568184 602 ntTSL 3 BASIC16.46■□□□□ 0.23
CLIP3Q96DZ5 MIR3687-2-201ENST00000577708 61 ntBASIC16.46■□□□□ 0.23
CLIP3Q96DZ5 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC16.46■□□□□ 0.23
CLIP3Q96DZ5 AC008667.4-201ENST00000607370 168 ntBASIC16.46■□□□□ 0.23
CLIP3Q96DZ5 MIR3687-1-201ENST00000614492 61 ntBASIC16.46■□□□□ 0.23
CLIP3Q96DZ5 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC16.46■□□□□ 0.23
CLIP3Q96DZ5 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
CLIP3Q96DZ5 GIT2-202ENST00000354574 5387 ntTSL 5 BASIC16.46■□□□□ 0.23
CLIP3Q96DZ5 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC16.46■□□□□ 0.23
CLIP3Q96DZ5 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC16.46■□□□□ 0.23
CLIP3Q96DZ5 CSRNP1-201ENST00000273153 3148 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
CLIP3Q96DZ5 GINM1-201ENST00000367419 2024 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
CLIP3Q96DZ5 TIGD2-202ENST00000603357 3217 ntAPPRIS P1 TSL 4 BASIC16.46■□□□□ 0.23
CLIP3Q96DZ5 FAM174B-201ENST00000327355 2792 ntAPPRIS P2 TSL 1 (best) BASIC16.46■□□□□ 0.23
CLIP3Q96DZ5 TBC1D1-203ENST00000402522 1567 ntTSL 2 BASIC16.46■□□□□ 0.23
CLIP3Q96DZ5 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
CLIP3Q96DZ5 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC16.46■□□□□ 0.23
CLIP3Q96DZ5 EIF4G3-205ENST00000400422 5762 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
CLIP3Q96DZ5 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC16.46■□□□□ 0.22
CLIP3Q96DZ5 CD5L-201ENST00000368174 2191 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CLIP3Q96DZ5 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CLIP3Q96DZ5 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC16.45■□□□□ 0.22
CLIP3Q96DZ5 STAC-201ENST00000273183 3227 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CLIP3Q96DZ5 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC16.45■□□□□ 0.22
CLIP3Q96DZ5 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC16.45■□□□□ 0.22
CLIP3Q96DZ5 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC16.45■□□□□ 0.22
CLIP3Q96DZ5 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC16.45■□□□□ 0.22
CLIP3Q96DZ5 ZNF296-202ENST00000622376 1631 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
CLIP3Q96DZ5 PSRC1-201ENST00000369903 1710 ntAPPRIS P3 TSL 5 BASIC16.45■□□□□ 0.22
CLIP3Q96DZ5 NPRL3-211ENST00000611875 2881 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
CLIP3Q96DZ5 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
CLIP3Q96DZ5 SMARCA4-215ENST00000590574 5282 ntAPPRIS ALT1 TSL 5 BASIC16.45■□□□□ 0.22
CLIP3Q96DZ5 NOC2LP2-201ENST00000407594 1944 ntBASIC16.45■□□□□ 0.22
CLIP3Q96DZ5 SCP2-202ENST00000371513 2003 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
CLIP3Q96DZ5 RAI2-203ENST00000415486 2037 ntTSL 2 BASIC16.45■□□□□ 0.22
CLIP3Q96DZ5 DIXDC1-208ENST00000615255 4825 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
CLIP3Q96DZ5 WDR13-201ENST00000218056 2124 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CLIP3Q96DZ5 INPP5J-205ENST00000404390 2215 ntAPPRIS P3 TSL 2 BASIC16.45■□□□□ 0.22
CLIP3Q96DZ5 VSTM1-201ENST00000338372 1023 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
CLIP3Q96DZ5 CR559946.1-201ENST00000453835 531 ntTSL 4 BASIC16.45■□□□□ 0.22
CLIP3Q96DZ5 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC16.45■□□□□ 0.22
CLIP3Q96DZ5 AL133375.1-201ENST00000500590 980 ntTSL 5 BASIC16.45■□□□□ 0.22
CLIP3Q96DZ5 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC16.45■□□□□ 0.22
CLIP3Q96DZ5 AC008992.1-201ENST00000591132 446 ntTSL 2 BASIC16.45■□□□□ 0.22
CLIP3Q96DZ5 AC244517.5-205ENST00000623615 575 ntTSL 4 BASIC16.45■□□□□ 0.22
CLIP3Q96DZ5 BTBD11-205ENST00000490090 4614 ntTSL 2 BASIC16.45■□□□□ 0.22
CLIP3Q96DZ5 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CLIP3Q96DZ5 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC16.45■□□□□ 0.22
CLIP3Q96DZ5 ZNF496-201ENST00000294753 5336 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CLIP3Q96DZ5 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC16.45■□□□□ 0.22
CLIP3Q96DZ5 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC16.45■□□□□ 0.22
CLIP3Q96DZ5 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC16.45■□□□□ 0.22
CLIP3Q96DZ5 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CLIP3Q96DZ5 DOK4-201ENST00000340099 2772 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CLIP3Q96DZ5 NSFL1C-201ENST00000216879 3568 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CLIP3Q96DZ5 MAP3K11-201ENST00000309100 3566 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CLIP3Q96DZ5 FLOT2-202ENST00000394908 2618 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
CLIP3Q96DZ5 TGDS-201ENST00000261296 1905 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CLIP3Q96DZ5 REXO1L11P-201ENST00000620964 1927 ntBASIC16.45■□□□□ 0.22
CLIP3Q96DZ5 NAT6-205ENST00000443842 1820 ntAPPRIS ALT2 TSL 2 BASIC16.45■□□□□ 0.22
CLIP3Q96DZ5 PCDHA1-203ENST00000504120 5263 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CLIP3Q96DZ5 PSMA1-209ENST00000530457 1527 ntTSL 5 BASIC16.45■□□□□ 0.22
CLIP3Q96DZ5 SLCO4A1-AS1-202ENST00000433126 1420 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
CLIP3Q96DZ5 AC005920.1-201ENST00000501718 2054 ntTSL 2 BASIC16.44■□□□□ 0.22
CLIP3Q96DZ5 KDM6A-212ENST00000543216 5655 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
CLIP3Q96DZ5 MXD1-201ENST00000264444 5587 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CLIP3Q96DZ5 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC16.44■□□□□ 0.22
CLIP3Q96DZ5 INHA-201ENST00000243786 1468 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CLIP3Q96DZ5 GPR89P-201ENST00000407924 1495 ntBASIC16.44■□□□□ 0.22
CLIP3Q96DZ5 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC16.44■□□□□ 0.22
CLIP3Q96DZ5 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CLIP3Q96DZ5 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC16.44■□□□□ 0.22
CLIP3Q96DZ5 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CLIP3Q96DZ5 IGKV4-1-201ENST00000390243 538 ntAPPRIS P1 BASIC16.44■□□□□ 0.22
CLIP3Q96DZ5 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 104.7 ms