Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC16.96■□□□□ 0.31
TTC28Q96AY4 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC16.96■□□□□ 0.31
TTC28Q96AY4 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
TTC28Q96AY4 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC16.96■□□□□ 0.31
TTC28Q96AY4 FDFT1-202ENST00000443614 1393 ntTSL 2 BASIC16.96■□□□□ 0.31
TTC28Q96AY4 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC16.96■□□□□ 0.31
TTC28Q96AY4 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
TTC28Q96AY4 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
TTC28Q96AY4 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
TTC28Q96AY4 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC16.96■□□□□ 0.31
TTC28Q96AY4 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
TTC28Q96AY4 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
TTC28Q96AY4 STX1A-202ENST00000395154 1022 ntTSL 3 BASIC16.96■□□□□ 0.31
TTC28Q96AY4 PEMT-203ENST00000395782 895 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
TTC28Q96AY4 AP1S3-202ENST00000396653 589 ntTSL 4 BASIC16.96■□□□□ 0.31
TTC28Q96AY4 AC008267.1-201ENST00000474858 1069 ntBASIC16.96■□□□□ 0.31
TTC28Q96AY4 HIST2H2BC-201ENST00000498492 580 ntBASIC16.96■□□□□ 0.31
TTC28Q96AY4 AC008438.1-201ENST00000507521 549 ntTSL 2 BASIC16.96■□□□□ 0.31
TTC28Q96AY4 MIR3907-201ENST00000579424 151 ntBASIC16.96■□□□□ 0.31
TTC28Q96AY4 YIF1B-214ENST00000591784 940 ntTSL 5 BASIC16.96■□□□□ 0.31
TTC28Q96AY4 FDPS-221ENST00000612683 1198 ntAPPRIS ALT1 TSL 5 BASIC16.96■□□□□ 0.31
TTC28Q96AY4 TUBB3-215ENST00000625617 570 ntTSL 4 BASIC16.96■□□□□ 0.31
TTC28Q96AY4 RBM8A-206ENST00000632555 751 ntAPPRIS P1 TSL 3 BASIC16.96■□□□□ 0.31
TTC28Q96AY4 BARHL1-201ENST00000263610 2341 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
TTC28Q96AY4 GYG1-214ENST00000627418 1831 ntTSL 5 BASIC16.96■□□□□ 0.31
TTC28Q96AY4 PLA2G7-201ENST00000274793 1882 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
TTC28Q96AY4 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
TTC28Q96AY4 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC16.96■□□□□ 0.31
TTC28Q96AY4 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
TTC28Q96AY4 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
TTC28Q96AY4 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
TTC28Q96AY4 PEX13-203ENST00000414712 1014 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
TTC28Q96AY4 AL096772.1-201ENST00000451135 781 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
TTC28Q96AY4 MIR6756-201ENST00000616240 63 ntBASIC16.95■□□□□ 0.3
TTC28Q96AY4 AC148477.9-201ENST00000623974 539 ntBASIC16.95■□□□□ 0.3
TTC28Q96AY4 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
TTC28Q96AY4 KRT8P37-201ENST00000451609 1420 ntBASIC16.95■□□□□ 0.3
TTC28Q96AY4 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
TTC28Q96AY4 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
TTC28Q96AY4 TUBBP5-201ENST00000290377 1563 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
TTC28Q96AY4 FGFR2-207ENST00000359354 1680 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
TTC28Q96AY4 DLG1-AS1-202ENST00000430666 1694 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
TTC28Q96AY4 DKFZp779M0652-201ENST00000378779 649 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
TTC28Q96AY4 SUMO1-201ENST00000392244 831 ntTSL 2 BASIC16.95■□□□□ 0.3
TTC28Q96AY4 SUMO1-209ENST00000409712 761 ntTSL 2 BASIC16.95■□□□□ 0.3
TTC28Q96AY4 AL139420.1-201ENST00000439394 653 ntTSL 3 BASIC16.95■□□□□ 0.3
TTC28Q96AY4 APOA1-AS-201ENST00000444200 563 ntTSL 4 BASIC16.95■□□□□ 0.3
TTC28Q96AY4 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC16.95■□□□□ 0.3
TTC28Q96AY4 SNAI3-AS1-206ENST00000569786 588 ntTSL 3 BASIC16.95■□□□□ 0.3
TTC28Q96AY4 AC129507.1-201ENST00000570711 1013 ntTSL 2 BASIC16.95■□□□□ 0.3
TTC28Q96AY4 COX10-AS1-206ENST00000602743 576 ntTSL 5 BASIC16.95■□□□□ 0.3
TTC28Q96AY4 PRKN-211ENST00000615065 261 ntTSL 5 BASIC16.95■□□□□ 0.3
TTC28Q96AY4 RWDD4-205ENST00000510968 1551 ntTSL 4 BASIC16.95■□□□□ 0.3
TTC28Q96AY4 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
TTC28Q96AY4 TRNT1-205ENST00000402675 1935 ntTSL 2 BASIC16.95■□□□□ 0.3
TTC28Q96AY4 KIZ-211ENST00000619574 1971 ntAPPRIS ALT2 TSL 2 BASIC16.95■□□□□ 0.3
TTC28Q96AY4 AC126763.1-201ENST00000552015 2118 ntBASIC16.95■□□□□ 0.3
TTC28Q96AY4 CEP19-202ENST00000409690 2201 ntAPPRIS P2 TSL 1 (best) BASIC16.95■□□□□ 0.3
TTC28Q96AY4 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
TTC28Q96AY4 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
TTC28Q96AY4 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
TTC28Q96AY4 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
TTC28Q96AY4 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
TTC28Q96AY4 ISL2-201ENST00000290759 1881 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
TTC28Q96AY4 DEF8-225ENST00000569453 1852 ntAPPRIS P4 TSL 2 BASIC16.94■□□□□ 0.3
TTC28Q96AY4 ARRB2-204ENST00000412477 1779 ntTSL 2 BASIC16.94■□□□□ 0.3
TTC28Q96AY4 TP73-213ENST00000604479 1623 ntTSL 5 BASIC16.94■□□□□ 0.3
TTC28Q96AY4 AMT-232ENST00000636199 1546 ntTSL 5 BASIC16.94■□□□□ 0.3
TTC28Q96AY4 NPY-201ENST00000242152 585 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
TTC28Q96AY4 LINC01665-201ENST00000422917 1241 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
TTC28Q96AY4 AC243961.1-201ENST00000432559 384 ntTSL 5 BASIC16.94■□□□□ 0.3
TTC28Q96AY4 AC245056.1-201ENST00000437631 384 ntTSL 5 BASIC16.94■□□□□ 0.3
TTC28Q96AY4 AL160313.1-201ENST00000502101 1039 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
TTC28Q96AY4 AC018635.2-201ENST00000608625 364 ntBASIC16.94■□□□□ 0.3
TTC28Q96AY4 AC097724.1-201ENST00000609581 426 ntBASIC16.94■□□□□ 0.3
TTC28Q96AY4 AC008687.7-202ENST00000637404 953 ntBASIC16.94■□□□□ 0.3
TTC28Q96AY4 LINC00592-202ENST00000640420 768 ntTSL 5 BASIC16.94■□□□□ 0.3
TTC28Q96AY4 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC16.94■□□□□ 0.3
TTC28Q96AY4 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
TTC28Q96AY4 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC16.94■□□□□ 0.3
TTC28Q96AY4 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
TTC28Q96AY4 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
TTC28Q96AY4 TNFRSF12A-202ENST00000341627 881 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
TTC28Q96AY4 ORMDL1-204ENST00000409519 1223 ntTSL 3 BASIC16.94■□□□□ 0.3
TTC28Q96AY4 GNB3-202ENST00000435982 1110 ntAPPRIS ALT1 TSL 1 (best) BASIC16.94■□□□□ 0.3
TTC28Q96AY4 RAB34-210ENST00000436730 863 ntAPPRIS P1 TSL 3 BASIC16.94■□□□□ 0.3
TTC28Q96AY4 PRYP6-201ENST00000514804 343 ntBASIC16.94■□□□□ 0.3
TTC28Q96AY4 AL355310.3-201ENST00000526411 582 ntTSL 3 BASIC16.94■□□□□ 0.3
TTC28Q96AY4 HTATIP2-205ENST00000530266 713 ntTSL 3 BASIC16.94■□□□□ 0.3
TTC28Q96AY4 LINC00479-204ENST00000589300 718 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
TTC28Q96AY4 NDUFV2P1-201ENST00000596415 907 ntBASIC16.94■□□□□ 0.3
TTC28Q96AY4 AC008763.1-201ENST00000601797 843 ntTSL 3 BASIC16.94■□□□□ 0.3
TTC28Q96AY4 CU634019.7-201ENST00000624153 1185 ntBASIC16.94■□□□□ 0.3
TTC28Q96AY4 FP236241.2-201ENST00000624906 1185 ntBASIC16.94■□□□□ 0.3
TTC28Q96AY4 AC004461.2-201ENST00000629517 803 ntBASIC16.94■□□□□ 0.3
TTC28Q96AY4 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
TTC28Q96AY4 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC16.94■□□□□ 0.3
TTC28Q96AY4 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
TTC28Q96AY4 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC16.94■□□□□ 0.3
TTC28Q96AY4 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC16.94■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 24.2 ms