Protein–RNA interactions for Protein: Q8IXS2

CCDC65, Coiled-coil domain-containing protein 65, humanhuman

Predictions only

Length 484 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC65Q8IXS2 EWSAT1-206ENST00000558922 1725 ntTSL 5 BASIC18.87■□□□□ 0.61
CCDC65Q8IXS2 ETFA-208ENST00000559602 792 ntTSL 3 BASIC18.87■□□□□ 0.61
CCDC65Q8IXS2 AC105339.3-201ENST00000560043 636 ntBASIC18.87■□□□□ 0.61
CCDC65Q8IXS2 ACSM2B-211ENST00000567001 1988 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
CCDC65Q8IXS2 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC18.87■□□□□ 0.61
CCDC65Q8IXS2 KRT8P49-201ENST00000604166 1432 ntBASIC18.87■□□□□ 0.61
CCDC65Q8IXS2 GTPBP8-208ENST00000619116 1378 ntTSL 5 BASIC18.87■□□□□ 0.61
CCDC65Q8IXS2 MIR1199-201ENST00000621445 119 ntBASIC18.87■□□□□ 0.61
CCDC65Q8IXS2 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC18.87■□□□□ 0.61
CCDC65Q8IXS2 TRIM9-201ENST00000298355 5284 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
CCDC65Q8IXS2 SLC8A3-203ENST00000357887 5259 ntTSL 5 BASIC18.87■□□□□ 0.61
CCDC65Q8IXS2 SLC8A3-204ENST00000381269 5268 ntAPPRIS ALT1 TSL 1 (best) BASIC18.87■□□□□ 0.61
CCDC65Q8IXS2 EPN2-203ENST00000395618 2216 ntTSL 2 BASIC18.86■□□□□ 0.61
CCDC65Q8IXS2 AGGF1P2-201ENST00000426656 2106 ntBASIC18.86■□□□□ 0.61
CCDC65Q8IXS2 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
CCDC65Q8IXS2 QRFPR-202ENST00000394427 1708 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CCDC65Q8IXS2 LHX9-204ENST00000367391 1623 ntTSL 5 BASIC18.86■□□□□ 0.61
CCDC65Q8IXS2 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC18.86■□□□□ 0.61
CCDC65Q8IXS2 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
CCDC65Q8IXS2 CABP1-201ENST00000288616 1369 ntAPPRIS P4 TSL 1 (best) BASIC18.86■□□□□ 0.61
CCDC65Q8IXS2 FAM184A-201ENST00000338891 4141 ntAPPRIS P4 TSL 1 (best) BASIC18.86■□□□□ 0.61
CCDC65Q8IXS2 BICD1-205ENST00000550207 1328 ntTSL 3 BASIC18.86■□□□□ 0.61
CCDC65Q8IXS2 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC18.86■□□□□ 0.61
CCDC65Q8IXS2 TMEM234-202ENST00000344461 721 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
CCDC65Q8IXS2 AL049795.1-201ENST00000373604 642 ntTSL 3 BASIC18.86■□□□□ 0.61
CCDC65Q8IXS2 FAM99B-201ENST00000382166 1067 ntTSL 5 BASIC18.86■□□□□ 0.61
CCDC65Q8IXS2 AC087163.2-201ENST00000457299 853 ntBASIC18.86■□□□□ 0.61
CCDC65Q8IXS2 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC18.86■□□□□ 0.61
CCDC65Q8IXS2 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC18.86■□□□□ 0.61
CCDC65Q8IXS2 AP000688.1-201ENST00000535199 1221 ntTSL 2 BASIC18.86■□□□□ 0.61
CCDC65Q8IXS2 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC18.86■□□□□ 0.61
CCDC65Q8IXS2 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC18.86■□□□□ 0.61
CCDC65Q8IXS2 OPN5-206ENST00000638973 1090 ntTSL 5 BASIC18.86■□□□□ 0.61
CCDC65Q8IXS2 ADORA1-209ENST00000640524 653 ntTSL 5 BASIC18.86■□□□□ 0.61
CCDC65Q8IXS2 LSM12-204ENST00000591247 2484 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CCDC65Q8IXS2 SEMA5B-202ENST00000357599 4792 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
CCDC65Q8IXS2 MRTO4-201ENST00000330263 2315 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CCDC65Q8IXS2 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CCDC65Q8IXS2 ZBTB16-202ENST00000392996 2287 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CCDC65Q8IXS2 PRRX1-202ENST00000367760 2217 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
CCDC65Q8IXS2 SYT6-205ENST00000609117 4424 ntTSL 5 BASIC18.86■□□□□ 0.61
CCDC65Q8IXS2 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
CCDC65Q8IXS2 RNF165-204ENST00000587853 2011 ntTSL 5 BASIC18.86■□□□□ 0.61
CCDC65Q8IXS2 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC18.86■□□□□ 0.61
CCDC65Q8IXS2 CCDC142-201ENST00000290418 2835 ntAPPRIS P2 TSL 2 BASIC18.86■□□□□ 0.61
CCDC65Q8IXS2 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC18.86■□□□□ 0.61
CCDC65Q8IXS2 APLNR-203ENST00000611099 1789 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CCDC65Q8IXS2 C1orf115-201ENST00000294889 3413 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CCDC65Q8IXS2 ARID5A-203ENST00000454558 3079 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
CCDC65Q8IXS2 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC18.85■□□□□ 0.61
CCDC65Q8IXS2 PODNL1-202ENST00000339560 2165 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
CCDC65Q8IXS2 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC18.85■□□□□ 0.61
CCDC65Q8IXS2 SLFNL1-205ENST00000439569 2117 ntAPPRIS P3 TSL 2 BASIC18.85■□□□□ 0.61
CCDC65Q8IXS2 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
CCDC65Q8IXS2 ADAM22-202ENST00000398201 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
CCDC65Q8IXS2 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
CCDC65Q8IXS2 SLC22A3-201ENST00000275300 3348 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
CCDC65Q8IXS2 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
CCDC65Q8IXS2 TTLL5-219ENST00000556977 1961 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
CCDC65Q8IXS2 AC078925.2-201ENST00000624013 1973 ntBASIC18.85■□□□□ 0.61
CCDC65Q8IXS2 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
CCDC65Q8IXS2 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC18.85■□□□□ 0.61
CCDC65Q8IXS2 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC18.85■□□□□ 0.61
CCDC65Q8IXS2 NPM2-204ENST00000518119 1190 ntAPPRIS P2 TSL 1 (best) BASIC18.85■□□□□ 0.61
CCDC65Q8IXS2 AP002469.2-201ENST00000531724 424 ntBASIC18.85■□□□□ 0.61
CCDC65Q8IXS2 AL160237.2-201ENST00000556165 472 ntBASIC18.85■□□□□ 0.61
CCDC65Q8IXS2 AC008738.3-201ENST00000589932 659 ntTSL 2 BASIC18.85■□□□□ 0.61
CCDC65Q8IXS2 AC005625.1-201ENST00000590304 472 ntTSL 3 BASIC18.85■□□□□ 0.61
CCDC65Q8IXS2 AC104692.2-201ENST00000603054 253 ntBASIC18.85■□□□□ 0.61
CCDC65Q8IXS2 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC18.85■□□□□ 0.61
CCDC65Q8IXS2 AC148477.8-201ENST00000624298 468 ntBASIC18.85■□□□□ 0.61
CCDC65Q8IXS2 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
CCDC65Q8IXS2 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
CCDC65Q8IXS2 SEPHS1-201ENST00000327347 3273 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
CCDC65Q8IXS2 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC18.85■□□□□ 0.61
CCDC65Q8IXS2 NSFL1C-202ENST00000353088 2611 ntTSL 2 BASIC18.85■□□□□ 0.61
CCDC65Q8IXS2 C1orf56-201ENST00000368926 2096 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
CCDC65Q8IXS2 CROCCP1-201ENST00000426910 5675 ntBASIC18.85■□□□□ 0.61
CCDC65Q8IXS2 EWSR1-203ENST00000332050 2552 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
CCDC65Q8IXS2 C5orf24-202ENST00000394976 5065 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CCDC65Q8IXS2 PHRF1-201ENST00000264555 5523 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
CCDC65Q8IXS2 LFNG-207ENST00000614382 1969 ntTSL 5 BASIC18.84■□□□□ 0.61
CCDC65Q8IXS2 RNF216P1-203ENST00000404404 2427 ntBASIC18.84■□□□□ 0.61
CCDC65Q8IXS2 TEX19-201ENST00000333437 1936 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CCDC65Q8IXS2 DMKN-209ENST00000429837 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
CCDC65Q8IXS2 SRF-201ENST00000265354 4202 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CCDC65Q8IXS2 FAM120AOS-201ENST00000375412 2771 ntAPPRIS P3 TSL 1 (best) BASIC18.84■□□□□ 0.61
CCDC65Q8IXS2 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
CCDC65Q8IXS2 TMEM237-213ENST00000621467 1824 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
CCDC65Q8IXS2 APBA2-207ENST00000558402 4031 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
CCDC65Q8IXS2 RAB3IP-207ENST00000483530 1755 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
CCDC65Q8IXS2 CCDC62-201ENST00000253079 3546 ntAPPRIS P2 TSL 1 (best) BASIC18.84■□□□□ 0.61
CCDC65Q8IXS2 EPM2A-201ENST00000367519 3465 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CCDC65Q8IXS2 EIF4A3-201ENST00000269349 1734 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CCDC65Q8IXS2 MAGEA4-206ENST00000393921 1727 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
CCDC65Q8IXS2 WDR74-204ENST00000525239 1736 ntAPPRIS P1 TSL 2 BASIC18.84■□□□□ 0.61
CCDC65Q8IXS2 FGF8-203ENST00000346714 694 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
CCDC65Q8IXS2 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC18.84■□□□□ 0.61
CCDC65Q8IXS2 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC18.84■□□□□ 0.61
CCDC65Q8IXS2 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC18.84■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 27.4 ms