Protein–RNA interactions for Protein: Q8IXF0

NPAS3, Neuronal PAS domain-containing protein 3, humanhuman

Predictions only

Length 933 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3Q8IXF0 CHRNA4-201ENST00000370263 5577 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
NPAS3Q8IXF0 TNNC2-201ENST00000372555 710 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
NPAS3Q8IXF0 HNRNPA1P40-201ENST00000426371 1278 ntBASIC17.52■□□□□ 0.4
NPAS3Q8IXF0 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC17.52■□□□□ 0.4
NPAS3Q8IXF0 IGHV3-42-201ENST00000520410 361 ntBASIC17.52■□□□□ 0.4
NPAS3Q8IXF0 FGFR1OP2-206ENST00000546072 956 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
NPAS3Q8IXF0 AP000842.3-202ENST00000569238 1080 ntBASIC17.52■□□□□ 0.4
NPAS3Q8IXF0 ZNF550-208ENST00000601415 515 ntTSL 4 BASIC17.52■□□□□ 0.4
NPAS3Q8IXF0 AL158211.3-201ENST00000607385 239 ntBASIC17.52■□□□□ 0.4
NPAS3Q8IXF0 WT1-AS_2.1-201ENST00000613208 137 ntBASIC17.52■□□□□ 0.4
NPAS3Q8IXF0 AC008267.7-201ENST00000624570 1194 ntBASIC17.52■□□□□ 0.4
NPAS3Q8IXF0 AC020934.3-201ENST00000639810 348 ntAPPRIS P1 TSL 3 BASIC17.52■□□□□ 0.4
NPAS3Q8IXF0 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
NPAS3Q8IXF0 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
NPAS3Q8IXF0 GRB10-208ENST00000403097 5432 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
NPAS3Q8IXF0 AL162586.1-201ENST00000439298 2055 ntTSL 2 BASIC17.52■□□□□ 0.39
NPAS3Q8IXF0 EGFEM1P-202ENST00000431685 1563 ntBASIC17.52■□□□□ 0.39
NPAS3Q8IXF0 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
NPAS3Q8IXF0 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
NPAS3Q8IXF0 GNAS-203ENST00000306120 1878 ntBASIC17.52■□□□□ 0.39
NPAS3Q8IXF0 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC17.52■□□□□ 0.39
NPAS3Q8IXF0 C18orf8-208ENST00000590868 2002 ntTSL 2 BASIC17.52■□□□□ 0.39
NPAS3Q8IXF0 TOP3BP1-201ENST00000420768 1380 ntBASIC17.52■□□□□ 0.39
NPAS3Q8IXF0 COL16A1-203ENST00000373672 5736 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.39
NPAS3Q8IXF0 TBC1D4-204ENST00000431480 6347 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.39
NPAS3Q8IXF0 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC17.52■□□□□ 0.39
NPAS3Q8IXF0 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
NPAS3Q8IXF0 PSENEN-202ENST00000587708 1661 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
NPAS3Q8IXF0 RHOU-201ENST00000366691 4372 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
NPAS3Q8IXF0 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
NPAS3Q8IXF0 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC17.51■□□□□ 0.39
NPAS3Q8IXF0 IMPAD1-201ENST00000262644 7199 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
NPAS3Q8IXF0 CTSA-204ENST00000372484 2149 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
NPAS3Q8IXF0 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
NPAS3Q8IXF0 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
NPAS3Q8IXF0 SOWAHC-201ENST00000356454 4657 ntAPPRIS P1 BASIC17.51■□□□□ 0.39
NPAS3Q8IXF0 DSCAM-201ENST00000400454 8552 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
NPAS3Q8IXF0 SYNM-204ENST00000594047 6407 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
NPAS3Q8IXF0 SRP19-201ENST00000282999 937 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
NPAS3Q8IXF0 TMEM270-201ENST00000320531 854 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
NPAS3Q8IXF0 TPM2-201ENST00000329305 1018 ntAPPRIS ALT1 TSL 2 BASIC17.51■□□□□ 0.39
NPAS3Q8IXF0 NRN1L-201ENST00000339176 710 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
NPAS3Q8IXF0 COPE-202ENST00000349893 948 ntTSL 2 BASIC17.51■□□□□ 0.39
NPAS3Q8IXF0 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
NPAS3Q8IXF0 VCX-202ENST00000381059 967 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
NPAS3Q8IXF0 CRIP1-203ENST00000409393 677 ntAPPRIS P1 TSL 3 BASIC17.51■□□□□ 0.39
NPAS3Q8IXF0 TMEM37-202ENST00000409826 794 ntTSL 3 BASIC17.51■□□□□ 0.39
NPAS3Q8IXF0 PSMA8-203ENST00000415576 1280 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
NPAS3Q8IXF0 MATN3-202ENST00000421259 1443 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
NPAS3Q8IXF0 AC016735.2-201ENST00000438736 569 ntTSL 4 BASIC17.51■□□□□ 0.39
NPAS3Q8IXF0 PPP6R2P1-201ENST00000450880 1275 ntBASIC17.51■□□□□ 0.39
NPAS3Q8IXF0 FXYD1-202ENST00000455515 594 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
NPAS3Q8IXF0 CCDC159-201ENST00000458408 1062 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
NPAS3Q8IXF0 AC139713.2-206ENST00000499587 566 ntTSL 4 BASIC17.51■□□□□ 0.39
NPAS3Q8IXF0 TSC22D3-213ENST00000506081 956 ntTSL 5 BASIC17.51■□□□□ 0.39
NPAS3Q8IXF0 AC106795.3-201ENST00000511650 547 ntTSL 4 BASIC17.51■□□□□ 0.39
NPAS3Q8IXF0 ALG1L8P-201ENST00000533887 760 ntBASIC17.51■□□□□ 0.39
NPAS3Q8IXF0 ZFP1-208ENST00000568079 1426 ntTSL 2 BASIC17.51■□□□□ 0.39
NPAS3Q8IXF0 MIR3909-201ENST00000579518 119 ntBASIC17.51■□□□□ 0.39
NPAS3Q8IXF0 LTBP1-203ENST00000404816 6333 ntAPPRIS P4 TSL 5 BASIC17.51■□□□□ 0.39
NPAS3Q8IXF0 DXO-203ENST00000375356 1533 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
NPAS3Q8IXF0 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
NPAS3Q8IXF0 AP003071.5-201ENST00000641568 2695 ntAPPRIS P1 BASIC17.51■□□□□ 0.39
NPAS3Q8IXF0 P2RY6-208ENST00000540124 2351 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
NPAS3Q8IXF0 AC004951.4-201ENST00000454572 2076 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
NPAS3Q8IXF0 TEX19-201ENST00000333437 1936 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
NPAS3Q8IXF0 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
NPAS3Q8IXF0 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
NPAS3Q8IXF0 SLC44A3-207ENST00000529450 2045 ntTSL 2 BASIC17.5■□□□□ 0.39
NPAS3Q8IXF0 CGREF1-206ENST00000405600 1346 ntAPPRIS P2 TSL 4 BASIC17.5■□□□□ 0.39
NPAS3Q8IXF0 LSP1-217ENST00000612798 1881 ntAPPRIS ALT2 TSL 2 BASIC17.5■□□□□ 0.39
NPAS3Q8IXF0 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
NPAS3Q8IXF0 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
NPAS3Q8IXF0 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
NPAS3Q8IXF0 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC17.5■□□□□ 0.39
NPAS3Q8IXF0 CARD10-202ENST00000403299 4113 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
NPAS3Q8IXF0 HMOX2-217ENST00000619528 1829 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
NPAS3Q8IXF0 NAA35-201ENST00000361671 2649 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
NPAS3Q8IXF0 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC17.5■□□□□ 0.39
NPAS3Q8IXF0 PENK-201ENST00000314922 1199 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
NPAS3Q8IXF0 MUC1-201ENST00000337604 859 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
NPAS3Q8IXF0 CACNB2-206ENST00000377328 1233 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
NPAS3Q8IXF0 C6orf52-202ENST00000379586 430 ntAPPRIS ALT2 TSL 2 BASIC17.5■□□□□ 0.39
NPAS3Q8IXF0 TNNT3-204ENST00000381558 1258 ntAPPRIS ALT2 TSL 5 BASIC17.5■□□□□ 0.39
NPAS3Q8IXF0 RAC2-204ENST00000406508 893 ntTSL 5 BASIC17.5■□□□□ 0.39
NPAS3Q8IXF0 SLC25A6P5-201ENST00000435663 894 ntBASIC17.5■□□□□ 0.39
NPAS3Q8IXF0 AC244107.1-201ENST00000442033 332 ntBASIC17.5■□□□□ 0.39
NPAS3Q8IXF0 C3orf14-202ENST00000462069 631 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
NPAS3Q8IXF0 AC002310.2-201ENST00000486926 950 ntTSL 2 BASIC17.5■□□□□ 0.39
NPAS3Q8IXF0 AC123777.1-201ENST00000534827 1247 ntTSL 3 BASIC17.5■□□□□ 0.39
NPAS3Q8IXF0 RBM7-207ENST00000544582 692 ntTSL 3 BASIC17.5■□□□□ 0.39
NPAS3Q8IXF0 AC027307.2-201ENST00000591252 911 ntBASIC17.5■□□□□ 0.39
NPAS3Q8IXF0 AC090241.2-202ENST00000602333 633 ntTSL 3 BASIC17.5■□□□□ 0.39
NPAS3Q8IXF0 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
NPAS3Q8IXF0 ZNF419-201ENST00000221735 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
NPAS3Q8IXF0 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
NPAS3Q8IXF0 GATB-209ENST00000512306 1519 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
NPAS3Q8IXF0 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
NPAS3Q8IXF0 CLEC17A-202ENST00000417570 1399 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
NPAS3Q8IXF0 CD72-204ENST00000396757 2035 ntAPPRIS P2 TSL 5 BASIC17.5■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 43.1 ms