Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 FRMD8P1-201ENST00000440433 1524 ntBASIC20.53■□□□□ 0.88
VPS53Q5VIR6 FAM46A-201ENST00000320172 5609 ntAPPRIS P2 TSL 1 (best) BASIC20.53■□□□□ 0.88
VPS53Q5VIR6 ARHGEF40-201ENST00000298694 5919 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
VPS53Q5VIR6 HASPIN-201ENST00000325418 2797 ntAPPRIS P1 BASIC20.53■□□□□ 0.88
VPS53Q5VIR6 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
VPS53Q5VIR6 AC092068.3-201ENST00000587894 2016 ntBASIC20.53■□□□□ 0.88
VPS53Q5VIR6 AGGF1P2-201ENST00000426656 2106 ntBASIC20.53■□□□□ 0.88
VPS53Q5VIR6 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC20.53■□□□□ 0.88
VPS53Q5VIR6 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC20.53■□□□□ 0.88
VPS53Q5VIR6 MRTO4-201ENST00000330263 2315 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
VPS53Q5VIR6 AL079303.2-201ENST00000555107 2613 ntTSL 3 BASIC20.53■□□□□ 0.88
VPS53Q5VIR6 OTOS-202ENST00000391989 645 ntAPPRIS P1 TSL 3 BASIC20.53■□□□□ 0.88
VPS53Q5VIR6 HIC2-201ENST00000407464 6798 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
VPS53Q5VIR6 OVOL1-203ENST00000532448 1774 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
VPS53Q5VIR6 CD300A-202ENST00000360141 1858 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
VPS53Q5VIR6 SCOC-211ENST00000614192 1959 ntAPPRIS P2 TSL 1 (best) BASIC20.53■□□□□ 0.88
VPS53Q5VIR6 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
VPS53Q5VIR6 ACSL4-201ENST00000340800 5333 ntAPPRIS P4 TSL 5 BASIC20.53■□□□□ 0.88
VPS53Q5VIR6 CLCN2-205ENST00000457512 2820 ntAPPRIS ALT2 TSL 2 BASIC20.53■□□□□ 0.88
VPS53Q5VIR6 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC20.53■□□□□ 0.88
VPS53Q5VIR6 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC20.53■□□□□ 0.88
VPS53Q5VIR6 ZNF773-201ENST00000282292 2206 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
VPS53Q5VIR6 CAP2-202ENST00000378990 1812 ntTSL 2 BASIC20.53■□□□□ 0.88
VPS53Q5VIR6 DUSP8-202ENST00000397374 4480 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
VPS53Q5VIR6 IL9RP2-201ENST00000423948 1312 ntBASIC20.53■□□□□ 0.88
VPS53Q5VIR6 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
VPS53Q5VIR6 TDRKH-202ENST00000368823 2751 ntAPPRIS ALT1 TSL 2 BASIC20.52■□□□□ 0.88
VPS53Q5VIR6 NCAPH2-203ENST00000395701 2077 ntTSL 2 BASIC20.52■□□□□ 0.88
VPS53Q5VIR6 TMEM132E-201ENST00000321639 5631 ntAPPRIS ALT2 TSL 5 BASIC20.52■□□□□ 0.88
VPS53Q5VIR6 STX3-203ENST00000529177 1571 ntTSL 2 BASIC20.52■□□□□ 0.88
VPS53Q5VIR6 SLC35G1-202ENST00000427197 2402 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
VPS53Q5VIR6 AC105020.1-201ENST00000435356 2205 ntBASIC20.52■□□□□ 0.88
VPS53Q5VIR6 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
VPS53Q5VIR6 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC20.52■□□□□ 0.88
VPS53Q5VIR6 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC20.52■□□□□ 0.88
VPS53Q5VIR6 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
VPS53Q5VIR6 CHMP1A-208ENST00000550102 803 ntTSL 5 BASIC20.52■□□□□ 0.88
VPS53Q5VIR6 AL049869.3-201ENST00000554918 558 ntTSL 3 BASIC20.52■□□□□ 0.88
VPS53Q5VIR6 HEXA-210ENST00000567213 1000 ntTSL 3 BASIC20.52■□□□□ 0.88
VPS53Q5VIR6 AL805961.1-202ENST00000641562 540 ntBASIC20.52■□□□□ 0.88
VPS53Q5VIR6 PPRC1-201ENST00000278070 5330 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
VPS53Q5VIR6 LSP1-202ENST00000381775 2016 ntAPPRIS ALT2 TSL 2 BASIC20.52■□□□□ 0.88
VPS53Q5VIR6 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
VPS53Q5VIR6 RAB8A-201ENST00000300935 2827 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
VPS53Q5VIR6 CLDN7-201ENST00000360325 1542 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
VPS53Q5VIR6 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
VPS53Q5VIR6 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC20.52■□□□□ 0.87
VPS53Q5VIR6 CHRNA5-201ENST00000299565 3623 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
VPS53Q5VIR6 SLC12A2-208ENST00000628403 3617 ntAPPRIS ALT2 TSL 5 BASIC20.52■□□□□ 0.87
VPS53Q5VIR6 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC20.52■□□□□ 0.87
VPS53Q5VIR6 LTBP2-205ENST00000556690 5614 ntAPPRIS ALT2 TSL 5 BASIC20.52■□□□□ 0.87
VPS53Q5VIR6 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC20.51■□□□□ 0.87
VPS53Q5VIR6 FRMD4A-203ENST00000357447 6821 ntAPPRIS P2 TSL 1 (best) BASIC20.51■□□□□ 0.87
VPS53Q5VIR6 AC133785.1-201ENST00000429282 2824 ntTSL 2 BASIC20.51■□□□□ 0.87
VPS53Q5VIR6 HYAL3-201ENST00000336307 1942 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
VPS53Q5VIR6 C2CD3-213ENST00000539061 2722 ntTSL 2 BASIC20.51■□□□□ 0.87
VPS53Q5VIR6 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
VPS53Q5VIR6 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC20.51■□□□□ 0.87
VPS53Q5VIR6 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
VPS53Q5VIR6 GUK1-202ENST00000366716 940 ntAPPRIS P3 TSL 1 (best) BASIC20.51■□□□□ 0.87
VPS53Q5VIR6 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC20.51■□□□□ 0.87
VPS53Q5VIR6 AC124947.2-201ENST00000547118 1133 ntBASIC20.51■□□□□ 0.87
VPS53Q5VIR6 ABHD17A-204ENST00000590661 1079 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
VPS53Q5VIR6 FAM71E1-202ENST00000595790 1225 ntAPPRIS P3 TSL 1 (best) BASIC20.51■□□□□ 0.87
VPS53Q5VIR6 TERC-201ENST00000602385 541 ntBASIC20.51■□□□□ 0.87
VPS53Q5VIR6 SLC26A1-205ENST00000622731 1057 ntTSL 5 BASIC20.51■□□□□ 0.87
VPS53Q5VIR6 ADORA1-209ENST00000640524 653 ntTSL 5 BASIC20.51■□□□□ 0.87
VPS53Q5VIR6 TRIM7-204ENST00000393319 2320 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
VPS53Q5VIR6 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
VPS53Q5VIR6 PTP4A1-201ENST00000370651 5088 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
VPS53Q5VIR6 TTLL10-201ENST00000379288 2114 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
VPS53Q5VIR6 PAK4-202ENST00000358301 2739 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
VPS53Q5VIR6 ATXN7-210ENST00000487717 3683 ntAPPRIS P3 TSL 5 BASIC20.51■□□□□ 0.87
VPS53Q5VIR6 SLC18B1-201ENST00000275227 2368 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
VPS53Q5VIR6 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
VPS53Q5VIR6 RNF19A-201ENST00000341084 4285 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
VPS53Q5VIR6 MAPKAP1-208ENST00000394063 2977 ntTSL 5 BASIC20.51■□□□□ 0.87
VPS53Q5VIR6 NDRG2-204ENST00000360463 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC20.51■□□□□ 0.87
VPS53Q5VIR6 SPAG6-203ENST00000376624 2605 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
VPS53Q5VIR6 KDM6A-202ENST00000382899 5789 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
VPS53Q5VIR6 NID1-202ENST00000366595 5412 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
VPS53Q5VIR6 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC20.51■□□□□ 0.87
VPS53Q5VIR6 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
VPS53Q5VIR6 DPP9-AS1-201ENST00000381796 3071 ntTSL 2 BASIC20.5■□□□□ 0.87
VPS53Q5VIR6 KCNK3-201ENST00000302909 6162 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
VPS53Q5VIR6 TLE3-205ENST00000539550 2464 ntTSL 2 BASIC20.5■□□□□ 0.87
VPS53Q5VIR6 SLC52A1-201ENST00000254853 2377 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
VPS53Q5VIR6 DPEP1-203ENST00000421184 1647 ntAPPRIS P1 TSL 5 BASIC20.5■□□□□ 0.87
VPS53Q5VIR6 SEPHS1-201ENST00000327347 3273 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
VPS53Q5VIR6 AL357673.1-201ENST00000637610 2542 ntAPPRIS P5 TSL 5 BASIC20.5■□□□□ 0.87
VPS53Q5VIR6 EED-202ENST00000327320 2033 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
VPS53Q5VIR6 ACTRT3-201ENST00000330368 2005 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
VPS53Q5VIR6 AC005915.1-201ENST00000624912 2018 ntBASIC20.5■□□□□ 0.87
VPS53Q5VIR6 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
VPS53Q5VIR6 PDHA1-203ENST00000379805 734 ntTSL 2 BASIC20.5■□□□□ 0.87
VPS53Q5VIR6 AP002414.1-201ENST00000391405 1147 ntBASIC20.5■□□□□ 0.87
VPS53Q5VIR6 NABP1-203ENST00000409510 843 ntTSL 5 BASIC20.5■□□□□ 0.87
VPS53Q5VIR6 AL590627.1-203ENST00000421194 1026 ntBASIC20.5■□□□□ 0.87
VPS53Q5VIR6 PAWRP1-201ENST00000451083 565 ntBASIC20.5■□□□□ 0.87
VPS53Q5VIR6 RNA5SP415-201ENST00000517246 115 ntBASIC20.5■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 28.3 ms