Protein–RNA interactions for Protein: P58872

RHBDL3, Rhomboid-related protein 3, humanhuman

Predictions only

Length 404 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RHBDL3P58872 FBLIM1-201ENST00000332305 1530 ntTSL 2 BASIC19.93■□□□□ 0.78
RHBDL3P58872 MANBAL-204ENST00000397151 1503 ntAPPRIS P1 TSL 3 BASIC19.93■□□□□ 0.78
RHBDL3P58872 MANBAL-205ENST00000397152 1539 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
RHBDL3P58872 GATB-209ENST00000512306 1519 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
RHBDL3P58872 CD99P1-204ENST00000435581 2788 ntTSL 2 BASIC19.93■□□□□ 0.78
RHBDL3P58872 NOX4-215ENST00000534731 2156 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
RHBDL3P58872 DEF8-225ENST00000569453 1852 ntAPPRIS P4 TSL 2 BASIC19.93■□□□□ 0.78
RHBDL3P58872 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC19.93■□□□□ 0.78
RHBDL3P58872 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC19.93■□□□□ 0.78
RHBDL3P58872 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC19.93■□□□□ 0.78
RHBDL3P58872 CLPP-201ENST00000245816 1155 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
RHBDL3P58872 SFT2D1-201ENST00000361731 1079 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
RHBDL3P58872 ITGA9-AS1-201ENST00000366441 895 ntTSL 3 BASIC19.93■□□□□ 0.78
RHBDL3P58872 AC055876.3-201ENST00000431496 288 ntBASIC19.93■□□□□ 0.78
RHBDL3P58872 STARD13-205ENST00000439831 945 ntTSL 2 BASIC19.93■□□□□ 0.78
RHBDL3P58872 KLF2P3-201ENST00000451977 1087 ntBASIC19.93■□□□□ 0.78
RHBDL3P58872 PTPRVP-202ENST00000490575 953 ntTSL 5 BASIC19.93■□□□□ 0.78
RHBDL3P58872 TPT1-AS1-219ENST00000523506 574 ntTSL 4 BASIC19.93■□□□□ 0.78
RHBDL3P58872 AC004771.3-201ENST00000574260 551 ntTSL 4 BASIC19.93■□□□□ 0.78
RHBDL3P58872 AC138649.4-201ENST00000612222 287 ntBASIC19.93■□□□□ 0.78
RHBDL3P58872 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
RHBDL3P58872 MOGS-205ENST00000452063 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
RHBDL3P58872 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC19.93■□□□□ 0.78
RHBDL3P58872 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
RHBDL3P58872 ALMS1P1-202ENST00000450720 1601 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
RHBDL3P58872 DCLK2-204ENST00000506325 2298 ntAPPRIS ALT2 TSL 5 BASIC19.93■□□□□ 0.78
RHBDL3P58872 BDKRB2-201ENST00000539359 1600 ntTSL 2 BASIC19.93■□□□□ 0.78
RHBDL3P58872 AC006277.1-201ENST00000624348 1610 ntBASIC19.93■□□□□ 0.78
RHBDL3P58872 DUOXA1-202ENST00000430224 1317 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
RHBDL3P58872 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
RHBDL3P58872 LTBR-207ENST00000539925 1665 ntAPPRIS ALT2 TSL 2 BASIC19.93■□□□□ 0.78
RHBDL3P58872 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC19.93■□□□□ 0.78
RHBDL3P58872 MATN3-202ENST00000421259 1443 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
RHBDL3P58872 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC19.93■□□□□ 0.78
RHBDL3P58872 CFAP45-201ENST00000368099 1842 ntAPPRIS P2 TSL 1 (best) BASIC19.92■□□□□ 0.78
RHBDL3P58872 ASB16-AS1-201ENST00000585457 2213 ntTSL 2 BASIC19.92■□□□□ 0.78
RHBDL3P58872 NOL4-211ENST00000589544 2221 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
RHBDL3P58872 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC19.92■□□□□ 0.78
RHBDL3P58872 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC19.92■□□□□ 0.78
RHBDL3P58872 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
RHBDL3P58872 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC19.92■□□□□ 0.78
RHBDL3P58872 BVES-202ENST00000336775 1663 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
RHBDL3P58872 GBGT1-201ENST00000372036 871 ntTSL 3 BASIC19.92■□□□□ 0.78
RHBDL3P58872 LY6G6C-201ENST00000375819 992 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
RHBDL3P58872 TAS2R41-201ENST00000408916 924 ntAPPRIS P1 BASIC19.92■□□□□ 0.78
RHBDL3P58872 AC019257.1-202ENST00000521498 445 ntTSL 5 BASIC19.92■□□□□ 0.78
RHBDL3P58872 AQP6-203ENST00000551733 849 ntTSL 3 BASIC19.92■□□□□ 0.78
RHBDL3P58872 AL133467.1-201ENST00000554161 993 ntTSL 2 BASIC19.92■□□□□ 0.78
RHBDL3P58872 CERNA1-201ENST00000559779 908 ntTSL 3 BASIC19.92■□□□□ 0.78
RHBDL3P58872 KF456478.1-201ENST00000585980 472 ntTSL 3 BASIC19.92■□□□□ 0.78
RHBDL3P58872 AC073389.1-201ENST00000595595 795 ntBASIC19.92■□□□□ 0.78
RHBDL3P58872 ZDHHC19-201ENST00000296326 1306 ntAPPRIS P1 TSL 5 BASIC19.92■□□□□ 0.78
RHBDL3P58872 LGALS12-205ENST00000425950 1789 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
RHBDL3P58872 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
RHBDL3P58872 POC1A-201ENST00000296484 1898 ntAPPRIS P3 TSL 1 (best) BASIC19.92■□□□□ 0.78
RHBDL3P58872 CD72-211ENST00000612238 1424 ntAPPRIS ALT2 TSL 5 BASIC19.92■□□□□ 0.78
RHBDL3P58872 SMTNL2-201ENST00000338859 1919 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
RHBDL3P58872 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
RHBDL3P58872 PARD3-205ENST00000374773 3420 ntTSL 5 BASIC19.92■□□□□ 0.78
RHBDL3P58872 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
RHBDL3P58872 DAGLB-202ENST00000425398 2044 ntTSL 2 BASIC19.92■□□□□ 0.78
RHBDL3P58872 FOXO1B-201ENST00000504678 1527 ntBASIC19.92■□□□□ 0.78
RHBDL3P58872 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC19.91■□□□□ 0.78
RHBDL3P58872 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
RHBDL3P58872 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
RHBDL3P58872 C14orf28-201ENST00000325192 2915 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
RHBDL3P58872 PCDHB17P-201ENST00000539533 2393 ntBASIC19.91■□□□□ 0.78
RHBDL3P58872 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC19.91■□□□□ 0.78
RHBDL3P58872 ZNF446-201ENST00000335841 1889 ntTSL 5 BASIC19.91■□□□□ 0.78
RHBDL3P58872 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC19.91■□□□□ 0.78
RHBDL3P58872 CABP5-201ENST00000293255 1257 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
RHBDL3P58872 WWOX-201ENST00000355860 710 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
RHBDL3P58872 HDAC8-202ENST00000373556 704 ntTSL 2 BASIC19.91■□□□□ 0.78
RHBDL3P58872 AL022068.1-202ENST00000432171 794 ntTSL 3 BASIC19.91■□□□□ 0.78
RHBDL3P58872 AC026202.2-201ENST00000439325 672 ntTSL 2 BASIC19.91■□□□□ 0.78
RHBDL3P58872 RAB7A-204ENST00000483906 533 ntTSL 3 BASIC19.91■□□□□ 0.78
RHBDL3P58872 LINC01089-211ENST00000543334 1282 ntTSL 4 BASIC19.91■□□□□ 0.78
RHBDL3P58872 AP000894.3-201ENST00000582554 351 ntTSL 5 BASIC19.91■□□□□ 0.78
RHBDL3P58872 SIGLEC29P-201ENST00000599873 1114 ntBASIC19.91■□□□□ 0.78
RHBDL3P58872 REEP2-211ENST00000613650 1944 ntTSL 5 BASIC19.91■□□□□ 0.78
RHBDL3P58872 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
RHBDL3P58872 BOD1L2-201ENST00000585477 3239 ntAPPRIS P1 BASIC19.91■□□□□ 0.78
RHBDL3P58872 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC19.91■□□□□ 0.78
RHBDL3P58872 CCDC90B-202ENST00000455220 1550 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
RHBDL3P58872 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
RHBDL3P58872 KIAA0895-208ENST00000440378 2441 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
RHBDL3P58872 GABRD-218ENST00000640949 1684 ntTSL 5 BASIC19.91■□□□□ 0.78
RHBDL3P58872 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC19.91■□□□□ 0.78
RHBDL3P58872 AC026954.2-202ENST00000575474 2571 ntAPPRIS P5 TSL 5 BASIC19.9■□□□□ 0.78
RHBDL3P58872 NAPA-AS1-201ENST00000593284 1753 ntTSL 2 BASIC19.9■□□□□ 0.78
RHBDL3P58872 GPR137-212ENST00000539851 1843 ntTSL 2 BASIC19.9■□□□□ 0.78
RHBDL3P58872 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC19.9■□□□□ 0.78
RHBDL3P58872 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
RHBDL3P58872 ORMDL1-203ENST00000392350 2009 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
RHBDL3P58872 PGM5-202ENST00000396396 3338 ntAPPRIS P1 TSL 2 BASIC19.9■□□□□ 0.78
RHBDL3P58872 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC19.9■□□□□ 0.78
RHBDL3P58872 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
RHBDL3P58872 CSNK1G2-AS1-201ENST00000314315 1252 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
RHBDL3P58872 OSTC-201ENST00000361564 1077 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
RHBDL3P58872 AC107890.1-201ENST00000422478 521 ntBASIC19.9■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 40.5 ms