Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 WTAP-205ENST00000614346 1623 ntTSL 2 BASIC12.82□□□□□ -0.36
FOXA3P55318 NACC2-201ENST00000277554 6899 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
FOXA3P55318 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC12.82□□□□□ -0.36
FOXA3P55318 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
FOXA3P55318 UBE2K-204ENST00000503368 891 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
FOXA3P55318 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC12.82□□□□□ -0.36
FOXA3P55318 AP002490.2-201ENST00000524791 560 ntBASIC12.82□□□□□ -0.36
FOXA3P55318 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
FOXA3P55318 MIR3917-201ENST00000580971 93 ntBASIC12.82□□□□□ -0.36
FOXA3P55318 AC008649.1-201ENST00000589557 516 ntTSL 2 BASIC12.82□□□□□ -0.36
FOXA3P55318 FAM32A-205ENST00000589852 1168 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
FOXA3P55318 CD177P1-201ENST00000606252 935 ntBASIC12.82□□□□□ -0.36
FOXA3P55318 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC12.82□□□□□ -0.36
FOXA3P55318 SLC44A3-207ENST00000529450 2045 ntTSL 2 BASIC12.82□□□□□ -0.36
FOXA3P55318 GDF11-201ENST00000257868 8657 ntAPPRIS P2 TSL 1 (best) BASIC12.82□□□□□ -0.36
FOXA3P55318 ARHGEF25-202ENST00000333972 2246 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
FOXA3P55318 LRRC38-201ENST00000376085 2209 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
FOXA3P55318 WDR90-209ENST00000547944 1672 ntTSL 2 BASIC12.82□□□□□ -0.36
FOXA3P55318 DMRTC2-204ENST00000596827 1675 ntTSL 2 BASIC12.82□□□□□ -0.36
FOXA3P55318 GOPC-203ENST00000535237 4460 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
FOXA3P55318 SLC22A12-201ENST00000336464 1854 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
FOXA3P55318 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
FOXA3P55318 SOWAHA-201ENST00000378693 3211 ntAPPRIS P1 BASIC12.82□□□□□ -0.36
FOXA3P55318 GLUD2-201ENST00000328078 2493 ntAPPRIS P1 BASIC12.82□□□□□ -0.36
FOXA3P55318 ABCG5-202ENST00000405322 2896 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
FOXA3P55318 PWP1-202ENST00000541166 1722 ntTSL 2 BASIC12.82□□□□□ -0.36
FOXA3P55318 NAF1-201ENST00000274054 1907 ntAPPRIS P3 TSL 1 (best) BASIC12.82□□□□□ -0.36
FOXA3P55318 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
FOXA3P55318 LEF1-202ENST00000379951 3477 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
FOXA3P55318 GFOD2-201ENST00000268797 2126 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
FOXA3P55318 AL445931.1-201ENST00000412181 2112 ntTSL 2 BASIC12.82□□□□□ -0.36
FOXA3P55318 DNAJB9-201ENST00000249356 2715 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
FOXA3P55318 ELOF1-203ENST00000586683 2154 ntTSL 2 BASIC12.81□□□□□ -0.36
FOXA3P55318 HNRNPA0-201ENST00000314940 8726 ntAPPRIS P1 BASIC12.81□□□□□ -0.36
FOXA3P55318 MYLK2-202ENST00000375994 2956 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
FOXA3P55318 ATP2A3-206ENST00000397043 3197 ntAPPRIS ALT1 TSL 1 (best) BASIC12.81□□□□□ -0.36
FOXA3P55318 BCAR1-207ENST00000538440 3192 ntAPPRIS ALT2 TSL 2 BASIC12.81□□□□□ -0.36
FOXA3P55318 C19orf68-203ENST00000614654 3588 ntAPPRIS P2 TSL 5 BASIC12.81□□□□□ -0.36
FOXA3P55318 KCNT1-206ENST00000486577 3760 ntAPPRIS ALT2 TSL 5 BASIC12.81□□□□□ -0.36
FOXA3P55318 OSBPL10-201ENST00000396556 6600 ntAPPRIS P3 TSL 1 (best) BASIC12.81□□□□□ -0.36
FOXA3P55318 CTSB-201ENST00000345125 2028 ntAPPRIS P1 TSL 5 BASIC12.81□□□□□ -0.36
FOXA3P55318 HOXC5-201ENST00000312492 1805 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
FOXA3P55318 AL360181.3-201ENST00000468317 1605 ntAPPRIS P1 TSL 5 BASIC12.81□□□□□ -0.36
FOXA3P55318 AC092338.2-201ENST00000568827 1415 ntBASIC12.81□□□□□ -0.36
FOXA3P55318 EPS8L2-223ENST00000533256 3266 ntAPPRIS P2 TSL 5 BASIC12.81□□□□□ -0.36
FOXA3P55318 DDHD2-205ENST00000520272 4532 ntAPPRIS P1 TSL 2 BASIC12.81□□□□□ -0.36
FOXA3P55318 ZNF382-202ENST00000423582 2657 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
FOXA3P55318 R3HDM2-201ENST00000347140 4331 ntAPPRIS P2 TSL 1 (best) BASIC12.81□□□□□ -0.36
FOXA3P55318 SEPT8-204ENST00000378699 2289 ntTSL 5 BASIC12.81□□□□□ -0.36
FOXA3P55318 PLTP-205ENST00000477313 2255 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
FOXA3P55318 DOLK-201ENST00000372586 2090 ntAPPRIS P1 BASIC12.81□□□□□ -0.36
FOXA3P55318 CANT1-211ENST00000591773 1669 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
FOXA3P55318 OTUD5-204ENST00000428668 1493 ntTSL 2 BASIC12.81□□□□□ -0.36
FOXA3P55318 EMC6-201ENST00000248378 653 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
FOXA3P55318 MRPL12-201ENST00000333676 1028 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
FOXA3P55318 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
FOXA3P55318 MYCLP1-201ENST00000372451 1075 ntBASIC12.81□□□□□ -0.36
FOXA3P55318 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
FOXA3P55318 HES2-202ENST00000377836 507 ntTSL 2 BASIC12.81□□□□□ -0.36
FOXA3P55318 NME1-203ENST00000393196 940 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
FOXA3P55318 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC12.81□□□□□ -0.36
FOXA3P55318 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
FOXA3P55318 LEF1-AS1-201ENST00000436413 1045 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
FOXA3P55318 BX088651.1-201ENST00000540551 451 ntBASIC12.81□□□□□ -0.36
FOXA3P55318 TMEM72-203ENST00000544540 1018 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
FOXA3P55318 AC009061.1-201ENST00000567261 475 ntTSL 3 BASIC12.81□□□□□ -0.36
FOXA3P55318 PPP6R1-203ENST00000587283 2953 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
FOXA3P55318 AC006058.3-201ENST00000606217 1069 ntBASIC12.81□□□□□ -0.36
FOXA3P55318 AC009154.2-201ENST00000621177 724 ntBASIC12.81□□□□□ -0.36
FOXA3P55318 DNAJB6-218ENST00000634080 1005 ntTSL 2 BASIC12.81□□□□□ -0.36
FOXA3P55318 AC004706.3-201ENST00000634558 1009 ntTSL 5 BASIC12.81□□□□□ -0.36
FOXA3P55318 ITFG1-201ENST00000320640 3400 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
FOXA3P55318 HCG18-233ENST00000412685 2552 ntTSL 2 BASIC12.81□□□□□ -0.36
FOXA3P55318 AIFM2-204ENST00000613322 3247 ntAPPRIS P1 TSL 5 BASIC12.81□□□□□ -0.36
FOXA3P55318 PABPC4-201ENST00000372856 3016 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
FOXA3P55318 IL6ST-209ENST00000502326 3007 ntAPPRIS P1 TSL 5 BASIC12.81□□□□□ -0.36
FOXA3P55318 MGEA5-201ENST00000357797 3263 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
FOXA3P55318 ATP2A3-204ENST00000397035 4182 ntTSL 5 BASIC12.81□□□□□ -0.36
FOXA3P55318 USP25-201ENST00000285679 3973 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
FOXA3P55318 EPB41L3-206ENST00000544123 3972 ntAPPRIS ALT2 TSL 2 BASIC12.81□□□□□ -0.36
FOXA3P55318 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
FOXA3P55318 COL11A2-201ENST00000341947 6425 ntAPPRIS ALT2 TSL 5 BASIC12.81□□□□□ -0.36
FOXA3P55318 FDFT1-224ENST00000618539 2660 ntAPPRIS P1 TSL 5 BASIC12.81□□□□□ -0.36
FOXA3P55318 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC12.81□□□□□ -0.36
FOXA3P55318 AP002360.1-202ENST00000530460 2462 ntAPPRIS ALT2 BASIC12.81□□□□□ -0.36
FOXA3P55318 AC141586.1-201ENST00000399702 2748 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
FOXA3P55318 IQCC-202ENST00000537469 2252 ntAPPRIS ALT2 TSL 1 (best) BASIC12.81□□□□□ -0.36
FOXA3P55318 AC007728.2-201ENST00000563315 2296 ntTSL 5 BASIC12.81□□□□□ -0.36
FOXA3P55318 GYG1-214ENST00000627418 1831 ntTSL 5 BASIC12.81□□□□□ -0.36
FOXA3P55318 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC12.81□□□□□ -0.36
FOXA3P55318 ARHGAP5-205ENST00000433497 3047 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
FOXA3P55318 PCDHGB2-202ENST00000622527 2588 ntAPPRIS P1 BASIC12.8□□□□□ -0.36
FOXA3P55318 PODNL1-201ENST00000254320 1859 ntTSL 2 BASIC12.8□□□□□ -0.36
FOXA3P55318 HLA-A-202ENST00000376806 1854 ntBASIC12.8□□□□□ -0.36
FOXA3P55318 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
FOXA3P55318 PAK6-202ENST00000455577 4215 ntTSL 2 BASIC12.8□□□□□ -0.36
FOXA3P55318 SLC29A1-206ENST00000371755 2112 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
FOXA3P55318 HSPB7-204ENST00000411503 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC12.8□□□□□ -0.36
FOXA3P55318 LITAF-201ENST00000339430 2356 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
FOXA3P55318 AIFM3-202ENST00000399167 2387 ntAPPRIS P3 TSL 2 BASIC12.8□□□□□ -0.36
Retrieved 100 of 98,524 protein–RNA pairs in 41 ms