Protein–RNA interactions for Protein: P55285

CDH6, Cadherin-6, humanhuman

Predictions only

Length 790 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH6P55285 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CDH6P55285 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC17.69■□□□□ 0.42
CDH6P55285 UFD1-202ENST00000399523 1007 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
CDH6P55285 HIST2H3DP1-201ENST00000401004 416 ntBASIC17.69■□□□□ 0.42
CDH6P55285 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC17.69■□□□□ 0.42
CDH6P55285 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC17.69■□□□□ 0.42
CDH6P55285 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CDH6P55285 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
CDH6P55285 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
CDH6P55285 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC17.69■□□□□ 0.42
CDH6P55285 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
CDH6P55285 ZSCAN1-203ENST00000601162 813 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
CDH6P55285 TERC-201ENST00000602385 541 ntBASIC17.69■□□□□ 0.42
CDH6P55285 AC004706.3-202ENST00000621574 984 ntBASIC17.69■□□□□ 0.42
CDH6P55285 MCRIP2-211ENST00000629534 341 ntTSL 2 BASIC17.69■□□□□ 0.42
CDH6P55285 RABGAP1L-204ENST00000357444 2605 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
CDH6P55285 UCKL1-202ENST00000358711 1845 ntTSL 2 BASIC17.69■□□□□ 0.42
CDH6P55285 CYP2S1-201ENST00000310054 2782 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CDH6P55285 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
CDH6P55285 SPIDR-227ENST00000541342 3311 ntAPPRIS ALT2 TSL 2 BASIC17.69■□□□□ 0.42
CDH6P55285 PNO1-201ENST00000263657 2286 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CDH6P55285 SATB2-202ENST00000417098 5730 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
CDH6P55285 MGEA5-202ENST00000361464 5155 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CDH6P55285 PTHLH-203ENST00000395872 1318 ntAPPRIS ALT1 TSL 5 BASIC17.69■□□□□ 0.42
CDH6P55285 FLT3LG-204ENST00000595510 1301 ntTSL 5 BASIC17.69■□□□□ 0.42
CDH6P55285 MPP1-202ENST00000369534 2042 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CDH6P55285 AHRR-203ENST00000505113 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
CDH6P55285 GIMAP1-201ENST00000307194 4420 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CDH6P55285 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
CDH6P55285 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
CDH6P55285 SEPT6-209ENST00000489216 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CDH6P55285 LMF1-201ENST00000262301 2621 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
CDH6P55285 ZNF423-206ENST00000563137 4911 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
CDH6P55285 FAM228B-210ENST00000615575 1357 ntAPPRIS P3 TSL 5 BASIC17.68■□□□□ 0.42
CDH6P55285 MAP3K9-201ENST00000381250 4025 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
CDH6P55285 PEX10-201ENST00000288774 2871 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
CDH6P55285 MED17-201ENST00000251871 5142 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CDH6P55285 TSC2-204ENST00000401874 5421 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
CDH6P55285 OSGEP-201ENST00000206542 2002 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CDH6P55285 RBFA-202ENST00000306735 1407 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CDH6P55285 NDUFA11-201ENST00000308961 539 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CDH6P55285 CHCHD1-201ENST00000372833 835 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CDH6P55285 FSCN1-201ENST00000382361 2777 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CDH6P55285 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC17.68■□□□□ 0.42
CDH6P55285 RAB17-203ENST00000409576 466 ntTSL 3 BASIC17.68■□□□□ 0.42
CDH6P55285 MCCC2-205ENST00000509358 1214 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
CDH6P55285 KRT126P-201ENST00000549467 1181 ntBASIC17.68■□□□□ 0.42
CDH6P55285 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC17.68■□□□□ 0.42
CDH6P55285 AL133352.1-203ENST00000557395 1234 ntAPPRIS P5 TSL 2 BASIC17.68■□□□□ 0.42
CDH6P55285 AL512357.1-201ENST00000557687 518 ntTSL 4 BASIC17.68■□□□□ 0.42
CDH6P55285 AC021739.2-201ENST00000558375 964 ntTSL 5 BASIC17.68■□□□□ 0.42
CDH6P55285 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC17.68■□□□□ 0.42
CDH6P55285 MAP2K3-215ENST00000627447 351 ntTSL 5 BASIC17.68■□□□□ 0.42
CDH6P55285 ORAI2-205ENST00000478730 5531 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
CDH6P55285 LRRC14-205ENST00000529022 2243 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CDH6P55285 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC17.68■□□□□ 0.42
CDH6P55285 ADGRG3-202ENST00000450388 1785 ntAPPRIS ALT2 TSL 2 BASIC17.68■□□□□ 0.42
CDH6P55285 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
CDH6P55285 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CDH6P55285 FOS-208ENST00000555686 1496 ntTSL 2 BASIC17.68■□□□□ 0.42
CDH6P55285 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
CDH6P55285 SLFNL1-205ENST00000439569 2117 ntAPPRIS P3 TSL 2 BASIC17.68■□□□□ 0.42
CDH6P55285 PRODH-202ENST00000334029 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
CDH6P55285 RDH13-202ENST00000396247 1987 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
CDH6P55285 ZBTB22-207ENST00000418724 2645 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CDH6P55285 BVES-202ENST00000336775 1663 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CDH6P55285 PRX-202ENST00000324001 4855 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
CDH6P55285 AL021920.2-201ENST00000624828 1351 ntBASIC17.67■□□□□ 0.42
CDH6P55285 AC092171.3-201ENST00000610122 2651 ntBASIC17.67■□□□□ 0.42
CDH6P55285 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
CDH6P55285 AC124067.4-201ENST00000519691 2379 ntBASIC17.67■□□□□ 0.42
CDH6P55285 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC17.67■□□□□ 0.42
CDH6P55285 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC17.67■□□□□ 0.42
CDH6P55285 TMEM65-201ENST00000297632 9029 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CDH6P55285 STAT5A-207ENST00000546010 3086 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
CDH6P55285 PRAG1-201ENST00000615670 4903 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
CDH6P55285 PTPN20-203ENST00000374342 1929 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
CDH6P55285 MBL1P-201ENST00000480805 1424 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
CDH6P55285 ZIC5-201ENST00000267294 4639 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CDH6P55285 DUSP8-201ENST00000331588 4455 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CDH6P55285 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC17.67■□□□□ 0.42
CDH6P55285 EDN3-202ENST00000337938 2636 ntAPPRIS P4 TSL 1 (best) BASIC17.67■□□□□ 0.42
CDH6P55285 NDUFS7-201ENST00000233627 1039 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CDH6P55285 AL645728.1-201ENST00000366221 2101 ntBASIC17.67■□□□□ 0.42
CDH6P55285 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
CDH6P55285 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC17.67■□□□□ 0.42
CDH6P55285 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC17.67■□□□□ 0.42
CDH6P55285 EMBP1-201ENST00000458200 901 ntBASIC17.67■□□□□ 0.42
CDH6P55285 TNFSF13-208ENST00000483039 959 ntTSL 2 BASIC17.67■□□□□ 0.42
CDH6P55285 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC17.67■□□□□ 0.42
CDH6P55285 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC17.67■□□□□ 0.42
CDH6P55285 PNMT-203ENST00000581428 677 ntTSL 2 BASIC17.67■□□□□ 0.42
CDH6P55285 AL691432.3-201ENST00000621860 400 ntBASIC17.67■□□□□ 0.42
CDH6P55285 ANXA8-202ENST00000583448 1971 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
CDH6P55285 ASB1-201ENST00000264607 6994 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CDH6P55285 ZNF454-201ENST00000320129 2332 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
CDH6P55285 GALNT18-201ENST00000227756 2504 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CDH6P55285 CHKA-201ENST00000265689 2530 ntAPPRIS P4 TSL 1 (best) BASIC17.67■□□□□ 0.42
CDH6P55285 SLC25A23-202ENST00000301454 3425 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CDH6P55285 DPY19L2P4-202ENST00000497063 2018 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 25.6 ms