Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 ADGRA1-203ENST00000607359 6004 ntAPPRIS ALT2 TSL 2 BASIC17.95■□□□□ 0.46
LIG3P49916 ACTN4-201ENST00000252699 4963 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
LIG3P49916 CDH15-201ENST00000289746 2847 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
LIG3P49916 PDE1C-202ENST00000396182 2420 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
LIG3P49916 DBET-201ENST00000630918 3363 ntBASIC17.94■□□□□ 0.46
LIG3P49916 KDM8-202ENST00000441782 1612 ntTSL 2 BASIC17.94■□□□□ 0.46
LIG3P49916 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
LIG3P49916 ZBTB46-201ENST00000245663 5185 ntAPPRIS P1 TSL 5 BASIC17.94■□□□□ 0.46
LIG3P49916 CDKN2AIP-203ENST00000504169 2721 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
LIG3P49916 LEXM-201ENST00000358193 1777 ntAPPRIS P3 TSL 1 (best) BASIC17.94■□□□□ 0.46
LIG3P49916 ZXDC-202ENST00000389709 3405 ntAPPRIS P4 TSL 1 (best) BASIC17.94■□□□□ 0.46
LIG3P49916 AQP8-201ENST00000219660 1359 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
LIG3P49916 REPS1-201ENST00000258062 3161 ntAPPRIS P3 TSL 1 (best) BASIC17.94■□□□□ 0.46
LIG3P49916 C17orf62-201ENST00000306645 2093 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
LIG3P49916 TK2-201ENST00000299697 5114 ntAPPRIS P3 TSL 1 (best) BASIC17.94■□□□□ 0.46
LIG3P49916 C1QC-201ENST00000374637 1089 ntAPPRIS P1 TSL 3 BASIC17.94■□□□□ 0.46
LIG3P49916 CDKN1C-201ENST00000380725 1220 ntAPPRIS ALT2 TSL 2 BASIC17.94■□□□□ 0.46
LIG3P49916 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC17.94■□□□□ 0.46
LIG3P49916 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC17.94■□□□□ 0.46
LIG3P49916 TMEM41B-203ENST00000527813 803 ntTSL 5 BASIC17.94■□□□□ 0.46
LIG3P49916 FICD-205ENST00000552758 603 ntTSL 2 BASIC17.94■□□□□ 0.46
LIG3P49916 ECSIT-207ENST00000588998 818 ntTSL 3 BASIC17.94■□□□□ 0.46
LIG3P49916 AL121894.2-201ENST00000602977 491 ntBASIC17.94■□□□□ 0.46
LIG3P49916 AL162497.1-201ENST00000615635 518 ntTSL 4 BASIC17.94■□□□□ 0.46
LIG3P49916 AL691432.3-201ENST00000621860 400 ntBASIC17.94■□□□□ 0.46
LIG3P49916 CCNC-219ENST00000627680 896 ntTSL 5 BASIC17.94■□□□□ 0.46
LIG3P49916 LINC02228-204ENST00000642115 2962 ntBASIC17.94■□□□□ 0.46
LIG3P49916 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
LIG3P49916 ITGA9-201ENST00000264741 7889 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
LIG3P49916 GPAT2P1-202ENST00000471661 1569 ntTSL 2 BASIC17.94■□□□□ 0.46
LIG3P49916 SNCAIP-202ENST00000261368 3745 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
LIG3P49916 TLE2-201ENST00000262953 2705 ntAPPRIS P3 TSL 1 (best) BASIC17.94■□□□□ 0.46
LIG3P49916 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
LIG3P49916 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC17.94■□□□□ 0.46
LIG3P49916 FZR1-202ENST00000395095 1491 ntAPPRIS ALT1 TSL 1 (best) BASIC17.94■□□□□ 0.46
LIG3P49916 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC17.94■□□□□ 0.46
LIG3P49916 LINC00884-202ENST00000448892 2680 ntTSL 5 BASIC17.94■□□□□ 0.46
LIG3P49916 IRX6-201ENST00000290552 3128 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
LIG3P49916 BNC1-201ENST00000345382 4610 ntAPPRIS P3 TSL 1 (best) BASIC17.94■□□□□ 0.46
LIG3P49916 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
LIG3P49916 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
LIG3P49916 A4GALT-203ENST00000401850 2321 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
LIG3P49916 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC17.93■□□□□ 0.46
LIG3P49916 CEP76-202ENST00000423709 2197 ntTSL 2 BASIC17.93■□□□□ 0.46
LIG3P49916 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
LIG3P49916 MEGF6-201ENST00000294599 4501 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
LIG3P49916 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC17.93■□□□□ 0.46
LIG3P49916 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC17.93■□□□□ 0.46
LIG3P49916 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC17.93■□□□□ 0.46
LIG3P49916 SULT2B1-201ENST00000201586 1295 ntAPPRIS P4 TSL 1 (best) BASIC17.93■□□□□ 0.46
LIG3P49916 CCDC134-201ENST00000255784 1270 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
LIG3P49916 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
LIG3P49916 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
LIG3P49916 TP53TG1-202ENST00000416560 710 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
LIG3P49916 NUS1P2-201ENST00000417358 873 ntBASIC17.93■□□□□ 0.46
LIG3P49916 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC17.93■□□□□ 0.46
LIG3P49916 AC111152.3-201ENST00000569699 673 ntBASIC17.93■□□□□ 0.46
LIG3P49916 SYNGR2-202ENST00000585591 949 ntAPPRIS P1 TSL 5 BASIC17.93■□□□□ 0.46
LIG3P49916 BNIP3P18-201ENST00000593976 575 ntBASIC17.93■□□□□ 0.46
LIG3P49916 RUNX1-201ENST00000300305 6222 ntAPPRIS P3 TSL 1 (best) BASIC17.93■□□□□ 0.46
LIG3P49916 GLOD4-202ENST00000301329 2059 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
LIG3P49916 AC005920.1-201ENST00000501718 2054 ntTSL 2 BASIC17.93■□□□□ 0.46
LIG3P49916 NSMCE3-201ENST00000332303 4838 ntAPPRIS P1 BASIC17.93■□□□□ 0.46
LIG3P49916 CSNK1A1-202ENST00000377843 2559 ntAPPRIS ALT1 TSL 1 (best) BASIC17.93■□□□□ 0.46
LIG3P49916 KLC4-202ENST00000347162 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
LIG3P49916 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
LIG3P49916 RBPMS-204ENST00000397323 2941 ntAPPRIS P3 TSL 1 (best) BASIC17.93■□□□□ 0.46
LIG3P49916 PCDHA13-202ENST00000409494 4884 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
LIG3P49916 EPS8L2-201ENST00000318562 3148 ntAPPRIS P2 TSL 1 (best) BASIC17.93■□□□□ 0.46
LIG3P49916 P2RX6-201ENST00000401443 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
LIG3P49916 MEN1-207ENST00000377326 3150 ntAPPRIS ALT1 TSL 5 BASIC17.93■□□□□ 0.46
LIG3P49916 FDFT1-224ENST00000618539 2660 ntAPPRIS P1 TSL 5 BASIC17.93■□□□□ 0.46
LIG3P49916 PLEKHN1-201ENST00000379407 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
LIG3P49916 ANKRD24-206ENST00000600132 4026 ntAPPRIS P2 TSL 5 BASIC17.93■□□□□ 0.46
LIG3P49916 CD72-204ENST00000396757 2035 ntAPPRIS P2 TSL 5 BASIC17.93■□□□□ 0.46
LIG3P49916 TMPRSS5-207ENST00000540540 2001 ntTSL 2 BASIC17.93■□□□□ 0.46
LIG3P49916 DIMT1-201ENST00000199320 2859 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
LIG3P49916 COX10-201ENST00000261643 2873 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
LIG3P49916 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
LIG3P49916 ESYT3-201ENST00000289135 1356 ntTSL 5 BASIC17.92■□□□□ 0.46
LIG3P49916 NTRK3-202ENST00000355254 2938 ntAPPRIS ALT2 TSL 5 BASIC17.92■□□□□ 0.46
LIG3P49916 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC17.92■□□□□ 0.46
LIG3P49916 MAST3-201ENST00000262811 5896 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
LIG3P49916 PCDH1-203ENST00000394536 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
LIG3P49916 NSFL1C-202ENST00000353088 2611 ntTSL 2 BASIC17.92■□□□□ 0.46
LIG3P49916 PLEKHA4-202ENST00000355496 2614 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
LIG3P49916 GLUD2-201ENST00000328078 2493 ntAPPRIS P1 BASIC17.92■□□□□ 0.46
LIG3P49916 ZIC5-201ENST00000267294 4639 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
LIG3P49916 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC17.92■□□□□ 0.46
LIG3P49916 MAP1LC3B-201ENST00000268607 2688 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
LIG3P49916 ARHGEF40-201ENST00000298694 5919 ntAPPRIS P1 TSL 2 BASIC17.92■□□□□ 0.46
LIG3P49916 OPRK1-202ENST00000520287 1602 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
LIG3P49916 SLC29A1-209ENST00000427851 2171 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
LIG3P49916 PSMB8-202ENST00000374882 1124 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
LIG3P49916 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
LIG3P49916 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC17.92■□□□□ 0.46
LIG3P49916 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC17.92■□□□□ 0.46
LIG3P49916 BARHL1-202ENST00000542090 1197 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
LIG3P49916 CTDNEP1-207ENST00000572043 857 ntTSL 3 BASIC17.92■□□□□ 0.46
LIG3P49916 IFNL4P1-201ENST00000607083 540 ntBASIC17.92■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 44.4 ms