Protein–RNA interactions for Protein: P18887

XRCC1, DNA repair protein XRCC1, humanhuman

Predicted RBP Predictions only

Length 633 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
XRCC1P18887 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
XRCC1P18887 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
XRCC1P18887 AL021453.1-201ENST00000333487 2989 ntTSL 2 BASIC17■□□□□ 0.31
XRCC1P18887 PIGQ-201ENST00000026218 2846 ntTSL 1 (best) BASIC17■□□□□ 0.31
XRCC1P18887 PCDHA6-202ENST00000527624 2231 ntTSL 1 (best) BASIC17■□□□□ 0.31
XRCC1P18887 PACS1-201ENST00000320580 4392 ntAPPRIS P2 TSL 1 (best) BASIC17■□□□□ 0.31
XRCC1P18887 AGAP2-201ENST00000257897 5388 ntAPPRIS P3 TSL 1 (best) BASIC17■□□□□ 0.31
XRCC1P18887 SH2B3-202ENST00000538307 2062 ntTSL 2 BASIC17■□□□□ 0.31
XRCC1P18887 GJB3-201ENST00000373362 1797 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
XRCC1P18887 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
XRCC1P18887 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
XRCC1P18887 SLC25A35-202ENST00000577745 1860 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
XRCC1P18887 EPB41-205ENST00000373797 2402 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
XRCC1P18887 CSNK1A1L-201ENST00000379800 2406 ntAPPRIS P1 BASIC16.99■□□□□ 0.31
XRCC1P18887 FO681492.1-201ENST00000623662 5321 ntAPPRIS P5 TSL 2 BASIC16.99■□□□□ 0.31
XRCC1P18887 SLC5A2-201ENST00000330498 2271 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
XRCC1P18887 GATA6-201ENST00000269216 3770 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
XRCC1P18887 AFG3L2-201ENST00000269143 3247 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
XRCC1P18887 SREK1-216ENST00000612404 2128 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
XRCC1P18887 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC16.99■□□□□ 0.31
XRCC1P18887 KLHDC8A-205ENST00000539253 2931 ntAPPRIS P1 TSL 5 BASIC16.99■□□□□ 0.31
XRCC1P18887 CACNB3-203ENST00000540990 1814 ntTSL 2 BASIC16.99■□□□□ 0.31
XRCC1P18887 MAGI1-213ENST00000483466 4791 ntAPPRIS P3 TSL 1 (best) BASIC16.99■□□□□ 0.31
XRCC1P18887 CTSG-201ENST00000216336 886 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
XRCC1P18887 LAMTOR5-201ENST00000256644 868 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
XRCC1P18887 FCN3-201ENST00000270879 1030 ntAPPRIS P4 TSL 1 (best) BASIC16.99■□□□□ 0.31
XRCC1P18887 FCN3-202ENST00000354982 997 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
XRCC1P18887 KLK14-202ENST00000391802 1133 ntAPPRIS P1 TSL 5 BASIC16.99■□□□□ 0.31
XRCC1P18887 AC134772.1-202ENST00000435578 549 ntTSL 4 BASIC16.99■□□□□ 0.31
XRCC1P18887 TSPY3-202ENST00000440483 414 ntTSL 5 BASIC16.99■□□□□ 0.31
XRCC1P18887 AC092910.1-201ENST00000482027 1129 ntBASIC16.99■□□□□ 0.31
XRCC1P18887 LAMTOR5-204ENST00000483260 694 ntTSL 2 BASIC16.99■□□□□ 0.31
XRCC1P18887 AC010226.1-202ENST00000508517 539 ntTSL 2 BASIC16.99■□□□□ 0.31
XRCC1P18887 RPL18-208ENST00000549920 1004 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
XRCC1P18887 RPL18-209ENST00000550645 463 ntTSL 5 BASIC16.99■□□□□ 0.31
XRCC1P18887 RPL18-214ENST00000552588 559 ntTSL 3 BASIC16.99■□□□□ 0.31
XRCC1P18887 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC16.99■□□□□ 0.31
XRCC1P18887 AC145285.3-201ENST00000564603 959 ntBASIC16.99■□□□□ 0.31
XRCC1P18887 AC106730.1-201ENST00000566722 1090 ntBASIC16.99■□□□□ 0.31
XRCC1P18887 SDCCAG3P1-201ENST00000589292 1150 ntBASIC16.99■□□□□ 0.31
XRCC1P18887 CYGB-205ENST00000590175 830 ntTSL 3 BASIC16.99■□□□□ 0.31
XRCC1P18887 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC16.99■□□□□ 0.31
XRCC1P18887 LAMTOR5-206ENST00000602318 634 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
XRCC1P18887 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC16.99■□□□□ 0.31
XRCC1P18887 COQ9-201ENST00000262507 1677 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
XRCC1P18887 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
XRCC1P18887 MEX3C-204ENST00000616921 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
XRCC1P18887 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
XRCC1P18887 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC16.99■□□□□ 0.31
XRCC1P18887 CARNS1-201ENST00000307823 3942 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
XRCC1P18887 CDC42EP3-201ENST00000295324 5700 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
XRCC1P18887 CLIC5-202ENST00000339561 2390 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
XRCC1P18887 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
XRCC1P18887 CYTH2-204ENST00000452733 4780 ntAPPRIS P2 TSL 1 (best) BASIC16.98■□□□□ 0.31
XRCC1P18887 FOXP3-201ENST00000376197 1326 ntTSL 2 BASIC16.98■□□□□ 0.31
XRCC1P18887 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
XRCC1P18887 ATG3-201ENST00000283290 1570 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
XRCC1P18887 HYAL1-202ENST00000320295 2324 ntAPPRIS P1 TSL 2 BASIC16.98■□□□□ 0.31
XRCC1P18887 AEBP1-206ENST00000450684 2571 ntTSL 2 BASIC16.98■□□□□ 0.31
XRCC1P18887 L1CAM-203ENST00000370055 4655 ntTSL 5 BASIC16.98■□□□□ 0.31
XRCC1P18887 SLCO4A1-AS1-202ENST00000433126 1420 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
XRCC1P18887 SVOPL-204ENST00000436657 1420 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
XRCC1P18887 NCF1C-201ENST00000438382 1427 ntBASIC16.98■□□□□ 0.31
XRCC1P18887 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC16.98■□□□□ 0.31
XRCC1P18887 SMAD4-201ENST00000342988 8769 ntAPPRIS P1 TSL 5 BASIC16.98■□□□□ 0.31
XRCC1P18887 SSH3-201ENST00000308127 2871 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
XRCC1P18887 KCNJ8-201ENST00000240662 2389 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
XRCC1P18887 ISCA2-201ENST00000298818 851 ntTSL 5 BASIC16.98■□□□□ 0.31
XRCC1P18887 OPN1LW-201ENST00000369951 1261 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
XRCC1P18887 CSF3-203ENST00000394148 622 ntTSL 3 BASIC16.98■□□□□ 0.31
XRCC1P18887 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC16.98■□□□□ 0.31
XRCC1P18887 KRT18P27-201ENST00000427733 1299 ntBASIC16.98■□□□□ 0.31
XRCC1P18887 S100A2-206ENST00000497140 697 ntTSL 2 BASIC16.98■□□□□ 0.31
XRCC1P18887 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC16.98■□□□□ 0.31
XRCC1P18887 SLC25A1P1-201ENST00000528351 927 ntBASIC16.98■□□□□ 0.31
XRCC1P18887 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC16.98■□□□□ 0.31
XRCC1P18887 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC16.98■□□□□ 0.31
XRCC1P18887 CLEC11A-203ENST00000617718 1128 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
XRCC1P18887 PGM5P2-202ENST00000637225 1043 ntBASIC16.98■□□□□ 0.31
XRCC1P18887 RASIP1-201ENST00000222145 3308 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
XRCC1P18887 GID4-202ENST00000376345 1391 ntTSL 3 BASIC16.98■□□□□ 0.31
XRCC1P18887 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
XRCC1P18887 VRK1-201ENST00000216639 1745 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
XRCC1P18887 RNF31-201ENST00000324103 3627 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
XRCC1P18887 TYRO3-201ENST00000263798 8207 ntAPPRIS P3 TSL 1 (best) BASIC16.98■□□□□ 0.31
XRCC1P18887 TRPV4-205ENST00000537083 2436 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
XRCC1P18887 WDR90-202ENST00000315764 1454 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
XRCC1P18887 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
XRCC1P18887 UBFD1-201ENST00000395878 5110 ntAPPRIS P2 TSL 2 BASIC16.98■□□□□ 0.31
XRCC1P18887 SEPT9-237ENST00000591198 2160 ntTSL 2 BASIC16.98■□□□□ 0.31
XRCC1P18887 SLC8A2-201ENST00000236877 5234 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
XRCC1P18887 PFN2-201ENST00000239940 2261 ntAPPRIS P3 TSL 1 (best) BASIC16.98■□□□□ 0.31
XRCC1P18887 NSFL1C-202ENST00000353088 2611 ntTSL 2 BASIC16.98■□□□□ 0.31
XRCC1P18887 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC16.98■□□□□ 0.31
XRCC1P18887 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC16.98■□□□□ 0.31
XRCC1P18887 ADCY9-201ENST00000294016 7725 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
XRCC1P18887 ELAVL2-208ENST00000544538 3789 ntAPPRIS P3 TSL 5 BASIC16.98■□□□□ 0.31
XRCC1P18887 LINC02199-201ENST00000506655 2702 ntBASIC16.98■□□□□ 0.31
XRCC1P18887 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC16.97■□□□□ 0.31
XRCC1P18887 OR2C3-203ENST00000617752 2481 ntAPPRIS P1 BASIC16.97■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 24.1 ms