Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 OSBPL1A-203ENST00000399441 1887 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
SIX3O95343 AL391256.1-201ENST00000443260 1855 ntBASIC16.65■□□□□ 0.26
SIX3O95343 AC008741.2-201ENST00000612792 3115 ntBASIC16.65■□□□□ 0.26
SIX3O95343 KCTD11-201ENST00000333751 2783 ntAPPRIS P1 BASIC16.65■□□□□ 0.26
SIX3O95343 ARL14EP-201ENST00000282032 2430 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
SIX3O95343 COL4A3BP-203ENST00000380494 5651 ntTSL 2 BASIC16.65■□□□□ 0.26
SIX3O95343 PON2-201ENST00000222572 1745 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
SIX3O95343 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.26
SIX3O95343 PKLR-202ENST00000392414 2479 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.26
SIX3O95343 DCAF17-211ENST00000539783 5623 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.26
SIX3O95343 FAM76B-201ENST00000358780 3952 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
SIX3O95343 GBA2-203ENST00000378103 3611 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
SIX3O95343 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
SIX3O95343 LRRC59-201ENST00000225972 2910 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
SIX3O95343 SRGAP2B-207ENST00000641863 2367 ntAPPRIS P5 BASIC16.64■□□□□ 0.25
SIX3O95343 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
SIX3O95343 ZAP70-201ENST00000264972 2437 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
SIX3O95343 RAI1-201ENST00000353383 7662 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.25
SIX3O95343 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
SIX3O95343 GGT1-204ENST00000401885 968 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
SIX3O95343 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC16.64■□□□□ 0.25
SIX3O95343 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC16.64■□□□□ 0.25
SIX3O95343 AL596442.1-201ENST00000429305 429 ntTSL 2 BASIC16.64■□□□□ 0.25
SIX3O95343 SLC2A1-204ENST00000460369 541 ntTSL 2 BASIC16.64■□□□□ 0.25
SIX3O95343 NT5C2-211ENST00000470299 249 ntTSL 5 BASIC16.64■□□□□ 0.25
SIX3O95343 BX005266.1-201ENST00000473402 457 ntBASIC16.64■□□□□ 0.25
SIX3O95343 AC051649.1-201ENST00000509204 330 ntTSL 3 BASIC16.64■□□□□ 0.25
SIX3O95343 AC034243.1-201ENST00000520838 587 ntTSL 2 BASIC16.64■□□□□ 0.25
SIX3O95343 ABO-202ENST00000538324 1147 ntAPPRIS P5 TSL 5 BASIC16.64■□□□□ 0.25
SIX3O95343 KRTCAP3-207ENST00000543753 956 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
SIX3O95343 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC16.64■□□□□ 0.25
SIX3O95343 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC16.64■□□□□ 0.25
SIX3O95343 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC16.64■□□□□ 0.25
SIX3O95343 IGHV3OR16-7-201ENST00000604106 360 ntBASIC16.64■□□□□ 0.25
SIX3O95343 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC16.64■□□□□ 0.25
SIX3O95343 AC006449.5-201ENST00000610658 2098 ntBASIC16.64■□□□□ 0.25
SIX3O95343 NFASC-205ENST00000403080 2462 ntTSL 2 BASIC16.64■□□□□ 0.25
SIX3O95343 IKBKE-204ENST00000584998 2487 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
SIX3O95343 AC092364.2-201ENST00000596710 2692 ntBASIC16.64■□□□□ 0.25
SIX3O95343 LANCL3-201ENST00000378619 3063 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
SIX3O95343 DDX42-208ENST00000578681 4337 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
SIX3O95343 UNC5D-203ENST00000416672 3532 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.25
SIX3O95343 SLC29A2-205ENST00000544554 2505 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
SIX3O95343 ST3GAL5-229ENST00000638986 2331 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.25
SIX3O95343 PTGES3-201ENST00000262033 1920 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
SIX3O95343 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC16.64■□□□□ 0.25
SIX3O95343 STPG3-AS1-201ENST00000612170 1701 ntTSL 2 BASIC16.64■□□□□ 0.25
SIX3O95343 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
SIX3O95343 TUBB8P12-201ENST00000308911 1335 ntBASIC16.64■□□□□ 0.25
SIX3O95343 FGFR3-204ENST00000412135 3951 ntTSL 5 BASIC16.64■□□□□ 0.25
SIX3O95343 TUBB7P-202ENST00000428444 1305 ntBASIC16.64■□□□□ 0.25
SIX3O95343 TUBB8P7-204ENST00000567960 1332 ntBASIC16.64■□□□□ 0.25
SIX3O95343 SYT15-202ENST00000374323 6428 ntTSL 2 BASIC16.64■□□□□ 0.25
SIX3O95343 C21orf58-201ENST00000291691 2975 ntAPPRIS P3 TSL 2 BASIC16.64■□□□□ 0.25
SIX3O95343 TVP23B-202ENST00000476139 2989 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
SIX3O95343 AIFM3-202ENST00000399167 2387 ntAPPRIS P3 TSL 2 BASIC16.64■□□□□ 0.25
SIX3O95343 AIFM3-207ENST00000440238 2368 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
SIX3O95343 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
SIX3O95343 BMI1-201ENST00000376663 3428 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
SIX3O95343 CHST10-201ENST00000264249 2842 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
SIX3O95343 GPR158-AS1-201ENST00000449643 2433 ntTSL 2 BASIC16.64■□□□□ 0.25
SIX3O95343 GID4-202ENST00000376345 1391 ntTSL 3 BASIC16.64■□□□□ 0.25
SIX3O95343 HTD2-206ENST00000481972 1378 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
SIX3O95343 SEMA5B-202ENST00000357599 4792 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
SIX3O95343 ZNF512B-201ENST00000369888 5919 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
SIX3O95343 IRF1-202ENST00000405885 2061 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
SIX3O95343 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
SIX3O95343 HIP1R-201ENST00000253083 4539 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
SIX3O95343 LTBP4-205ENST00000396819 4764 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
SIX3O95343 BVES-202ENST00000336775 1663 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
SIX3O95343 GUCA1B-201ENST00000230361 1113 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
SIX3O95343 EDN3-203ENST00000371025 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
SIX3O95343 PHGR1-201ENST00000448599 436 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
SIX3O95343 FOSL1P1-201ENST00000511041 816 ntBASIC16.63■□□□□ 0.25
SIX3O95343 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
SIX3O95343 COX5A-202ENST00000562233 441 ntTSL 3 BASIC16.63■□□□□ 0.25
SIX3O95343 AC016876.1-204ENST00000573187 679 ntTSL 3 BASIC16.63■□□□□ 0.25
SIX3O95343 MCRIP1-206ENST00000573478 1123 ntTSL 2 BASIC16.63■□□□□ 0.25
SIX3O95343 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC16.63■□□□□ 0.25
SIX3O95343 AC132938.3-201ENST00000579095 357 ntTSL 2 BASIC16.63■□□□□ 0.25
SIX3O95343 AC132872.3-201ENST00000620937 629 ntTSL 5 BASIC16.63■□□□□ 0.25
SIX3O95343 SPINK2-207ENST00000631082 392 ntTSL 5 BASIC16.63■□□□□ 0.25
SIX3O95343 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
SIX3O95343 TBC1D10B-201ENST00000409939 3350 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
SIX3O95343 NOL4L-211ENST00000621426 6577 ntAPPRIS P2 TSL 5 BASIC16.63■□□□□ 0.25
SIX3O95343 PDAP1-201ENST00000350498 2546 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
SIX3O95343 CCDC71L-202ENST00000523505 4232 ntAPPRIS P2 BASIC16.63■□□□□ 0.25
SIX3O95343 AFTPH-202ENST00000238856 4040 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
SIX3O95343 UGCG-201ENST00000374279 4007 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
SIX3O95343 LIMS2-208ENST00000410011 2335 ntAPPRIS ALT1 TSL 1 (best) BASIC16.63■□□□□ 0.25
SIX3O95343 HSD17B12-201ENST00000278353 2571 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
SIX3O95343 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
SIX3O95343 ASAP3-212ENST00000618240 2226 ntTSL 5 BASIC16.62■□□□□ 0.25
SIX3O95343 SULT1A2-204ENST00000533150 1991 ntTSL 2 BASIC16.62■□□□□ 0.25
SIX3O95343 COL27A1-201ENST00000356083 7790 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
SIX3O95343 SRSF12-201ENST00000452027 3599 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
SIX3O95343 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
SIX3O95343 C10orf111-201ENST00000624760 1714 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
SIX3O95343 FAM57B-201ENST00000279389 1481 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
SIX3O95343 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC16.62■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 32.1 ms