Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 AFTPH-201ENST00000238855 4113 ntAPPRIS ALT1 TSL 5 BASIC14.52□□□□□ -0.08
SDCBPO00560 MOB3B-201ENST00000262244 6454 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
SDCBPO00560 PPP1R16B-201ENST00000299824 6251 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
SDCBPO00560 CHRM2-201ENST00000320658 1694 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
SDCBPO00560 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.08
SDCBPO00560 JADE2-201ENST00000282605 2748 ntAPPRIS P1 TSL 2 BASIC14.52□□□□□ -0.08
SDCBPO00560 AC010460.3-201ENST00000511359 1579 ntBASIC14.52□□□□□ -0.08
SDCBPO00560 IL18BP-214ENST00000620017 1566 ntTSL 5 BASIC14.52□□□□□ -0.08
SDCBPO00560 MYOG-201ENST00000241651 1528 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
SDCBPO00560 PLEKHB1-202ENST00000354190 2380 ntAPPRIS P4 TSL 1 (best) BASIC14.52□□□□□ -0.08
SDCBPO00560 EDN3-205ENST00000395654 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.08
SDCBPO00560 DTNBP1-203ENST00000355917 1359 ntTSL 5 BASIC14.52□□□□□ -0.08
SDCBPO00560 TCP11L2-201ENST00000299045 2219 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
SDCBPO00560 AHRR-201ENST00000316418 5661 ntAPPRIS P3 TSL 1 (best) BASIC14.52□□□□□ -0.08
SDCBPO00560 CDKN1A-201ENST00000244741 2180 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
SDCBPO00560 FAM86DP-207ENST00000497543 2152 ntTSL 2 BASIC14.52□□□□□ -0.08
SDCBPO00560 TCEAL3-201ENST00000243286 1124 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
SDCBPO00560 AURKAIP1-202ENST00000338338 1047 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
SDCBPO00560 FXN-203ENST00000396366 922 ntTSL 2 BASIC14.52□□□□□ -0.09
SDCBPO00560 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC14.52□□□□□ -0.09
SDCBPO00560 DYDC2-206ENST00000444807 1173 ntAPPRIS P3 TSL 3 BASIC14.52□□□□□ -0.09
SDCBPO00560 RN7SL606P-201ENST00000472779 293 ntBASIC14.52□□□□□ -0.09
SDCBPO00560 EEF1D-243ENST00000532400 419 ntTSL 3 BASIC14.52□□□□□ -0.09
SDCBPO00560 AL161669.1-201ENST00000559843 386 ntTSL 3 BASIC14.52□□□□□ -0.09
SDCBPO00560 AC002310.4-201ENST00000568114 377 ntAPPRIS P1 TSL 5 BASIC14.52□□□□□ -0.09
SDCBPO00560 AC104971.2-201ENST00000588144 1209 ntTSL 2 BASIC14.52□□□□□ -0.09
SDCBPO00560 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC14.52□□□□□ -0.09
SDCBPO00560 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC14.52□□□□□ -0.09
SDCBPO00560 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC14.52□□□□□ -0.09
SDCBPO00560 CLSTN1-201ENST00000361311 4647 ntAPPRIS P3 TSL 1 (best) BASIC14.52□□□□□ -0.09
SDCBPO00560 GDA-201ENST00000238018 2074 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
SDCBPO00560 PPARD-202ENST00000337400 2041 ntTSL 5 BASIC14.52□□□□□ -0.09
SDCBPO00560 PGR-209ENST00000617858 2816 ntTSL 5 BASIC14.52□□□□□ -0.09
SDCBPO00560 LRRFIP1-201ENST00000244815 4370 ntAPPRIS P3 TSL 1 (best) BASIC14.52□□□□□ -0.09
SDCBPO00560 ELFN2-208ENST00000430883 1970 ntTSL 2 BASIC14.52□□□□□ -0.09
SDCBPO00560 ZC3H12A-201ENST00000373087 2684 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
SDCBPO00560 AC092364.2-201ENST00000596710 2692 ntBASIC14.52□□□□□ -0.09
SDCBPO00560 TMC5-202ENST00000381414 4755 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
SDCBPO00560 ANKRD24-206ENST00000600132 4026 ntAPPRIS P2 TSL 5 BASIC14.52□□□□□ -0.09
SDCBPO00560 CACNA1A-202ENST00000573710 7569 ntAPPRIS ALT2 TSL 5 BASIC14.52□□□□□ -0.09
SDCBPO00560 PELI3-209ENST00000618547 2508 ntTSL 2 BASIC14.52□□□□□ -0.09
SDCBPO00560 PKD1P5-201ENST00000532415 10291 ntBASIC14.52□□□□□ -0.09
SDCBPO00560 ASIC3-201ENST00000297512 1718 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
SDCBPO00560 AKT1-214ENST00000555528 3066 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
SDCBPO00560 TRIM7-204ENST00000393319 2320 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
SDCBPO00560 MXI1-202ENST00000332674 3470 ntAPPRIS P4 TSL 1 (best) BASIC14.51□□□□□ -0.09
SDCBPO00560 PLK2-215ENST00000617412 2792 ntTSL 5 BASIC14.51□□□□□ -0.09
SDCBPO00560 WASHC2C-202ENST00000359860 4471 ntAPPRIS ALT2 TSL 5 BASIC14.51□□□□□ -0.09
SDCBPO00560 RIMS1-213ENST00000517960 4428 ntTSL 5 BASIC14.51□□□□□ -0.09
SDCBPO00560 RIMS1-215ENST00000520567 4442 ntTSL 5 BASIC14.51□□□□□ -0.09
SDCBPO00560 ARHGEF10-201ENST00000349830 5590 ntAPPRIS P3 TSL 1 (best) BASIC14.51□□□□□ -0.09
SDCBPO00560 KLHL42-201ENST00000381271 6703 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
SDCBPO00560 ANAPC11-211ENST00000575195 1361 ntAPPRIS P1 TSL 2 BASIC14.51□□□□□ -0.09
SDCBPO00560 SPOP-201ENST00000347630 2965 ntAPPRIS P1 TSL 5 BASIC14.51□□□□□ -0.09
SDCBPO00560 ZDHHC13-202ENST00000446113 2445 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
SDCBPO00560 PROK1-201ENST00000271331 1338 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
SDCBPO00560 SARDH-205ENST00000422262 2367 ntTSL 5 BASIC14.51□□□□□ -0.09
SDCBPO00560 PFN1-201ENST00000225655 1291 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
SDCBPO00560 COX5BP2-201ENST00000392354 334 ntBASIC14.51□□□□□ -0.09
SDCBPO00560 AC007967.3-201ENST00000434308 558 ntBASIC14.51□□□□□ -0.09
SDCBPO00560 AC012645.3-201ENST00000568506 470 ntTSL 3 BASIC14.51□□□□□ -0.09
SDCBPO00560 ANAPC11-204ENST00000571024 668 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
SDCBPO00560 ANAPC11-218ENST00000582222 523 ntTSL 2 BASIC14.51□□□□□ -0.09
SDCBPO00560 AC016590.1-204ENST00000586442 813 ntTSL 5 BASIC14.51□□□□□ -0.09
SDCBPO00560 FRMD6-AS1-201ENST00000617151 2229 ntBASIC14.51□□□□□ -0.09
SDCBPO00560 GGT6-203ENST00000573591 1730 ntTSL 4 BASIC14.51□□□□□ -0.09
SDCBPO00560 TUBGCP2-202ENST00000368562 2685 ntTSL 2 BASIC14.51□□□□□ -0.09
SDCBPO00560 VIPR1-217ENST00000543411 2681 ntTSL 2 BASIC14.51□□□□□ -0.09
SDCBPO00560 SDC4-201ENST00000372733 2613 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
SDCBPO00560 GPER1-202ENST00000397088 2639 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
SDCBPO00560 AEBP1-206ENST00000450684 2571 ntTSL 2 BASIC14.51□□□□□ -0.09
SDCBPO00560 KCNT1-214ENST00000631073 3948 ntAPPRIS ALT2 TSL 5 BASIC14.51□□□□□ -0.09
SDCBPO00560 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC14.51□□□□□ -0.09
SDCBPO00560 RECQL4-209ENST00000617875 3809 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
SDCBPO00560 PDZD4-202ENST00000393758 3763 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
SDCBPO00560 PLAGL1-211ENST00000625622 3216 ntAPPRIS P1 TSL 2 BASIC14.51□□□□□ -0.09
SDCBPO00560 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC14.51□□□□□ -0.09
SDCBPO00560 CRY2-211ENST00000616080 1936 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
SDCBPO00560 RGS3-210ENST00000462143 2759 ntTSL 2 BASIC14.51□□□□□ -0.09
SDCBPO00560 DLG4-202ENST00000399506 3185 ntAPPRIS ALT1 TSL 2 BASIC14.5□□□□□ -0.09
SDCBPO00560 YAP1-208ENST00000531439 1490 ntAPPRIS ALT2 TSL 1 (best) BASIC14.5□□□□□ -0.09
SDCBPO00560 PPM1E-201ENST00000308249 6542 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
SDCBPO00560 OSBPL1A-203ENST00000399441 1887 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
SDCBPO00560 F3-201ENST00000334047 2287 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
SDCBPO00560 BANP-204ENST00000393208 2283 ntTSL 2 BASIC14.5□□□□□ -0.09
SDCBPO00560 ELAC2-203ENST00000426905 2671 ntTSL 2 BASIC14.5□□□□□ -0.09
SDCBPO00560 PPA2-202ENST00000348706 1414 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
SDCBPO00560 NADK2-206ENST00000506945 1437 ntTSL 2 BASIC14.5□□□□□ -0.09
SDCBPO00560 MSL1-206ENST00000579565 1401 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
SDCBPO00560 CACNA1A-221ENST00000636012 7500 ntAPPRIS ALT2 TSL 5 BASIC14.5□□□□□ -0.09
SDCBPO00560 PXK-204ENST00000383716 3035 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
SDCBPO00560 AC011270.2-201ENST00000624293 2550 ntBASIC14.5□□□□□ -0.09
SDCBPO00560 AGPAT2-205ENST00000538402 1357 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
SDCBPO00560 RBFADN-201ENST00000562391 1350 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
SDCBPO00560 TMEM19-201ENST00000266673 5656 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
SDCBPO00560 ASIC1-201ENST00000228468 4072 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
SDCBPO00560 PDCD1-201ENST00000334409 2114 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
SDCBPO00560 PCNX3-201ENST00000355703 7105 ntAPPRIS P1 TSL 5 BASIC14.5□□□□□ -0.09
SDCBPO00560 PHYH-202ENST00000396913 1732 ntTSL 5 BASIC14.5□□□□□ -0.09
SDCBPO00560 FAM104A-202ENST00000405159 2865 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 45 ms