Protein–RNA interactions for Protein: Q9Y5H8

PCDHA3, Protocadherin alpha-3, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA3Q9Y5H8 TRIM9-201ENST00000298355 5284 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
PCDHA3Q9Y5H8 AATK-201ENST00000326724 5257 ntAPPRIS P3 TSL 5 BASIC17.79■□□□□ 0.44
PCDHA3Q9Y5H8 FAM57B-201ENST00000279389 1481 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
PCDHA3Q9Y5H8 DVL1-202ENST00000378891 2926 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
PCDHA3Q9Y5H8 VCAN-204ENST00000502527 2087 ntAPPRIS ALT1 TSL 1 (best) BASIC17.79■□□□□ 0.44
PCDHA3Q9Y5H8 GCK-209ENST00000616242 2260 ntTSL 5 BASIC17.79■□□□□ 0.44
PCDHA3Q9Y5H8 CROCC2-201ENST00000443866 5382 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
PCDHA3Q9Y5H8 IKBKE-204ENST00000584998 2487 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
PCDHA3Q9Y5H8 AC074117.1-201ENST00000447070 3060 ntTSL 2 BASIC17.79■□□□□ 0.44
PCDHA3Q9Y5H8 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
PCDHA3Q9Y5H8 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
PCDHA3Q9Y5H8 CD72-204ENST00000396757 2035 ntAPPRIS P2 TSL 5 BASIC17.79■□□□□ 0.44
PCDHA3Q9Y5H8 LINC02370-201ENST00000428272 2009 ntTSL 5 BASIC17.79■□□□□ 0.44
PCDHA3Q9Y5H8 FRMD6-AS1-201ENST00000617151 2229 ntBASIC17.79■□□□□ 0.44
PCDHA3Q9Y5H8 SLC43A3-203ENST00000395124 2617 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
PCDHA3Q9Y5H8 LINC01215-201ENST00000607746 2592 ntTSL 3 BASIC17.79■□□□□ 0.44
PCDHA3Q9Y5H8 TRIL-201ENST00000539664 4935 ntAPPRIS P1 BASIC17.79■□□□□ 0.44
PCDHA3Q9Y5H8 ATG3-201ENST00000283290 1570 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
PCDHA3Q9Y5H8 RAD51D-201ENST00000335858 1353 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
PCDHA3Q9Y5H8 PELI3-209ENST00000618547 2508 ntTSL 2 BASIC17.78■□□□□ 0.44
PCDHA3Q9Y5H8 FAM208A-209ENST00000493960 5600 ntAPPRIS P2 TSL 5 BASIC17.78■□□□□ 0.44
PCDHA3Q9Y5H8 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
PCDHA3Q9Y5H8 PC-204ENST00000524491 1714 ntTSL 2 BASIC17.78■□□□□ 0.44
PCDHA3Q9Y5H8 AL590787.1-201ENST00000568856 1315 ntBASIC17.78■□□□□ 0.44
PCDHA3Q9Y5H8 PGRMC2-207ENST00000520121 3785 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
PCDHA3Q9Y5H8 CDCP1-201ENST00000296129 6006 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
PCDHA3Q9Y5H8 ELL-203ENST00000596124 1852 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
PCDHA3Q9Y5H8 KDSR-202ENST00000406396 5447 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
PCDHA3Q9Y5H8 GLDC-201ENST00000321612 3900 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
PCDHA3Q9Y5H8 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
PCDHA3Q9Y5H8 PLCG1-AS1-201ENST00000454626 1462 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
PCDHA3Q9Y5H8 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
PCDHA3Q9Y5H8 EED-202ENST00000327320 2033 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
PCDHA3Q9Y5H8 RCOR3-204ENST00000452621 1827 ntTSL 2 BASIC17.78■□□□□ 0.44
PCDHA3Q9Y5H8 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
PCDHA3Q9Y5H8 COPS8-203ENST00000409334 794 ntTSL 5 BASIC17.78■□□□□ 0.44
PCDHA3Q9Y5H8 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC17.78■□□□□ 0.44
PCDHA3Q9Y5H8 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC17.78■□□□□ 0.44
PCDHA3Q9Y5H8 AKTIP-212ENST00000570004 1162 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
PCDHA3Q9Y5H8 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
PCDHA3Q9Y5H8 NDUFA6-204ENST00000617763 1183 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
PCDHA3Q9Y5H8 FDX1-201ENST00000260270 3206 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
PCDHA3Q9Y5H8 KLHL21-202ENST00000377663 6445 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
PCDHA3Q9Y5H8 AP005117.1-201ENST00000584346 1413 ntBASIC17.78■□□□□ 0.44
PCDHA3Q9Y5H8 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC17.78■□□□□ 0.44
PCDHA3Q9Y5H8 F3-201ENST00000334047 2287 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
PCDHA3Q9Y5H8 CTSO-201ENST00000433477 2954 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
PCDHA3Q9Y5H8 UBR3-203ENST00000418381 7951 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
PCDHA3Q9Y5H8 TMC4-209ENST00000617472 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
PCDHA3Q9Y5H8 RAB23-202ENST00000468148 4837 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
PCDHA3Q9Y5H8 SCYL1-214ENST00000533862 2570 ntTSL 5 BASIC17.78■□□□□ 0.44
PCDHA3Q9Y5H8 RALGAPA1-219ENST00000637992 8512 ntTSL 5 BASIC17.78■□□□□ 0.44
PCDHA3Q9Y5H8 TVP23C-201ENST00000225576 1527 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
PCDHA3Q9Y5H8 ZNF281-201ENST00000294740 4891 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.44
PCDHA3Q9Y5H8 TMC3-AS1-203ENST00000559781 2195 ntTSL 3 BASIC17.77■□□□□ 0.44
PCDHA3Q9Y5H8 DDOST-202ENST00000415136 2126 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
PCDHA3Q9Y5H8 MRFAP1-205ENST00000617365 2112 ntTSL 5 BASIC17.77■□□□□ 0.44
PCDHA3Q9Y5H8 SEPT8-204ENST00000378699 2289 ntTSL 5 BASIC17.77■□□□□ 0.44
PCDHA3Q9Y5H8 ALOX12P2-203ENST00000570921 1945 ntBASIC17.77■□□□□ 0.44
PCDHA3Q9Y5H8 IRF1-202ENST00000405885 2061 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.44
PCDHA3Q9Y5H8 VMO1-202ENST00000354194 651 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
PCDHA3Q9Y5H8 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
PCDHA3Q9Y5H8 ATP5G2P1-201ENST00000433580 426 ntBASIC17.77■□□□□ 0.44
PCDHA3Q9Y5H8 IFT27-205ENST00000433985 1095 ntAPPRIS ALT1 TSL 1 (best) BASIC17.77■□□□□ 0.44
PCDHA3Q9Y5H8 RABL2B-209ENST00000435118 1126 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.44
PCDHA3Q9Y5H8 HLA-J-202ENST00000469281 1241 ntBASIC17.77■□□□□ 0.44
PCDHA3Q9Y5H8 RBPMS-AS1-202ENST00000519753 1031 ntTSL 5 BASIC17.77■□□□□ 0.44
PCDHA3Q9Y5H8 DEUP1-206ENST00000530273 410 ntTSL 3 BASIC17.77■□□□□ 0.44
PCDHA3Q9Y5H8 ABO-202ENST00000538324 1147 ntAPPRIS P5 TSL 5 BASIC17.77■□□□□ 0.44
PCDHA3Q9Y5H8 MCRIP1-206ENST00000573478 1123 ntTSL 2 BASIC17.77■□□□□ 0.44
PCDHA3Q9Y5H8 TERC-201ENST00000602385 541 ntBASIC17.77■□□□□ 0.44
PCDHA3Q9Y5H8 AL591684.3-201ENST00000605187 298 ntBASIC17.77■□□□□ 0.44
PCDHA3Q9Y5H8 AL353135.1-201ENST00000606729 504 ntBASIC17.77■□□□□ 0.44
PCDHA3Q9Y5H8 FRMD4A-203ENST00000357447 6821 ntAPPRIS P2 TSL 1 (best) BASIC17.77■□□□□ 0.44
PCDHA3Q9Y5H8 PHRF1-202ENST00000413872 5224 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
PCDHA3Q9Y5H8 PTPN21-208ENST00000556564 6166 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
PCDHA3Q9Y5H8 KRT8P49-201ENST00000604166 1432 ntBASIC17.77■□□□□ 0.44
PCDHA3Q9Y5H8 CD9-203ENST00000382518 1556 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.44
PCDHA3Q9Y5H8 AC006538.1-201ENST00000567905 1585 ntBASIC17.77■□□□□ 0.44
PCDHA3Q9Y5H8 SERPINB6-207ENST00000612421 1570 ntTSL 2 BASIC17.77■□□□□ 0.44
PCDHA3Q9Y5H8 GALNT6-201ENST00000356317 2809 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
PCDHA3Q9Y5H8 DNAAF2-202ENST00000406043 2819 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
PCDHA3Q9Y5H8 ZNF57-201ENST00000306908 2003 ntAPPRIS P2 TSL 1 (best) BASIC17.77■□□□□ 0.43
PCDHA3Q9Y5H8 ZNF57-205ENST00000614108 2002 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.43
PCDHA3Q9Y5H8 SGO1-201ENST00000263753 2338 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
PCDHA3Q9Y5H8 AC131160.1-201ENST00000639401 3058 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.43
PCDHA3Q9Y5H8 PCDHA7-202ENST00000525929 5221 ntAPPRIS P2 TSL 1 (best) BASIC17.77■□□□□ 0.43
PCDHA3Q9Y5H8 AC079328.2-201ENST00000561241 3354 ntBASIC17.77■□□□□ 0.43
PCDHA3Q9Y5H8 MAIP1-202ENST00000392290 1386 ntAPPRIS P2 TSL 1 (best) BASIC17.77■□□□□ 0.43
PCDHA3Q9Y5H8 TRAPPC11-201ENST00000334690 4552 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
PCDHA3Q9Y5H8 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC17.77■□□□□ 0.43
PCDHA3Q9Y5H8 PRKCSH-217ENST00000592741 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.43
PCDHA3Q9Y5H8 BX088651.4-201ENST00000435586 2579 ntTSL 2 BASIC17.77■□□□□ 0.43
PCDHA3Q9Y5H8 PDE1C-201ENST00000321453 2898 ntAPPRIS ALT1 TSL 2 BASIC17.77■□□□□ 0.43
PCDHA3Q9Y5H8 SIPA1-201ENST00000394224 3628 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
PCDHA3Q9Y5H8 PTP4A1-201ENST00000370651 5088 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
PCDHA3Q9Y5H8 TRAF3IP1-202ENST00000391993 4003 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
PCDHA3Q9Y5H8 FAM214B-206ENST00000603301 3256 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
PCDHA3Q9Y5H8 ADAM15-228ENST00000531455 2678 ntAPPRIS ALT2 TSL 2 BASIC17.76■□□□□ 0.43
PCDHA3Q9Y5H8 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC17.76■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 55 ms