Protein–RNA interactions for Protein: Q9Y5F2

PCDHB11, Protocadherin beta-11, humanhuman

Predictions only

Length 797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHB11Q9Y5F2 TNNT1-201ENST00000291901 967 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
PCDHB11Q9Y5F2 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
PCDHB11Q9Y5F2 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC16.71■□□□□ 0.27
PCDHB11Q9Y5F2 ANKRD54-202ENST00000406423 954 ntTSL 3 BASIC16.71■□□□□ 0.27
PCDHB11Q9Y5F2 LINC00982-205ENST00000420957 435 ntBASIC16.71■□□□□ 0.27
PCDHB11Q9Y5F2 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC16.71■□□□□ 0.27
PCDHB11Q9Y5F2 C17orf49-203ENST00000546760 764 ntTSL 5 BASIC16.71■□□□□ 0.27
PCDHB11Q9Y5F2 LHX5-AS1-201ENST00000551357 522 ntTSL 2 BASIC16.71■□□□□ 0.27
PCDHB11Q9Y5F2 NIFKP4-201ENST00000567275 1192 ntBASIC16.71■□□□□ 0.27
PCDHB11Q9Y5F2 AC005829.1-201ENST00000570002 483 ntBASIC16.71■□□□□ 0.27
PCDHB11Q9Y5F2 GALNT9-201ENST00000328957 2410 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
PCDHB11Q9Y5F2 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
PCDHB11Q9Y5F2 YY1-201ENST00000262238 6697 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
PCDHB11Q9Y5F2 DCP1B-201ENST00000280665 2086 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
PCDHB11Q9Y5F2 CD24-201ENST00000606017 2180 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.27
PCDHB11Q9Y5F2 PDE4A-201ENST00000293683 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.26
PCDHB11Q9Y5F2 ATP10A-201ENST00000356865 6680 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.26
PCDHB11Q9Y5F2 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
PCDHB11Q9Y5F2 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC16.7■□□□□ 0.26
PCDHB11Q9Y5F2 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC16.7■□□□□ 0.26
PCDHB11Q9Y5F2 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC16.7■□□□□ 0.26
PCDHB11Q9Y5F2 SLCO5A1-206ENST00000530307 2630 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
PCDHB11Q9Y5F2 PBX2-201ENST00000375050 3205 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
PCDHB11Q9Y5F2 FICD-204ENST00000552695 3347 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
PCDHB11Q9Y5F2 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
PCDHB11Q9Y5F2 GCGR-201ENST00000400723 2051 ntAPPRIS P2 TSL 1 (best) BASIC16.7■□□□□ 0.26
PCDHB11Q9Y5F2 C17orf62-203ENST00000434650 2050 ntTSL 2 BASIC16.7■□□□□ 0.26
PCDHB11Q9Y5F2 TAPBP-233ENST00000426633 1888 ntAPPRIS P4 TSL 1 (best) BASIC16.7■□□□□ 0.26
PCDHB11Q9Y5F2 PPRC1-201ENST00000278070 5330 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
PCDHB11Q9Y5F2 LGMN-216ENST00000557434 1797 ntTSL 5 BASIC16.7■□□□□ 0.26
PCDHB11Q9Y5F2 FO681492.1-201ENST00000623662 5321 ntAPPRIS P5 TSL 2 BASIC16.7■□□□□ 0.26
PCDHB11Q9Y5F2 TAPBP-238ENST00000475304 1686 ntAPPRIS ALT2 TSL 5 BASIC16.7■□□□□ 0.26
PCDHB11Q9Y5F2 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC16.7■□□□□ 0.26
PCDHB11Q9Y5F2 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC16.7■□□□□ 0.26
PCDHB11Q9Y5F2 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC16.7■□□□□ 0.26
PCDHB11Q9Y5F2 PNRC2-202ENST00000374468 814 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.26
PCDHB11Q9Y5F2 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
PCDHB11Q9Y5F2 CRYGEP-201ENST00000412192 528 ntBASIC16.7■□□□□ 0.26
PCDHB11Q9Y5F2 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
PCDHB11Q9Y5F2 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC16.7■□□□□ 0.26
PCDHB11Q9Y5F2 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC16.7■□□□□ 0.26
PCDHB11Q9Y5F2 ASIC2-201ENST00000225823 3443 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
PCDHB11Q9Y5F2 RHOF-201ENST00000267205 3009 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
PCDHB11Q9Y5F2 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
PCDHB11Q9Y5F2 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
PCDHB11Q9Y5F2 MCMBP-201ENST00000360003 4169 ntAPPRIS P3 TSL 2 BASIC16.7■□□□□ 0.26
PCDHB11Q9Y5F2 SLC2A5-201ENST00000377414 2344 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
PCDHB11Q9Y5F2 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC16.7■□□□□ 0.26
PCDHB11Q9Y5F2 LYPLAL1-201ENST00000366927 1819 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
PCDHB11Q9Y5F2 RASA4-202ENST00000449970 2787 ntAPPRIS ALT1 TSL 2 BASIC16.7■□□□□ 0.26
PCDHB11Q9Y5F2 AC099398.1-201ENST00000567919 2776 ntBASIC16.7■□□□□ 0.26
PCDHB11Q9Y5F2 KDSR-202ENST00000406396 5447 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
PCDHB11Q9Y5F2 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC16.7■□□□□ 0.26
PCDHB11Q9Y5F2 OGG1-206ENST00000349503 1950 ntTSL 5 BASIC16.69■□□□□ 0.26
PCDHB11Q9Y5F2 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC16.69■□□□□ 0.26
PCDHB11Q9Y5F2 QPCTL-201ENST00000012049 2310 ntAPPRIS P1 TSL 2 BASIC16.69■□□□□ 0.26
PCDHB11Q9Y5F2 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
PCDHB11Q9Y5F2 RBCK1-202ENST00000356286 2774 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
PCDHB11Q9Y5F2 EMILIN3-201ENST00000332312 3796 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
PCDHB11Q9Y5F2 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC16.69■□□□□ 0.26
PCDHB11Q9Y5F2 RDH12-201ENST00000267502 1833 ntAPPRIS P1 TSL 5 BASIC16.69■□□□□ 0.26
PCDHB11Q9Y5F2 SYNPO-201ENST00000307662 5374 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
PCDHB11Q9Y5F2 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC16.69■□□□□ 0.26
PCDHB11Q9Y5F2 ZNF789-202ENST00000379724 510 ntTSL 2 BASIC16.69■□□□□ 0.26
PCDHB11Q9Y5F2 AC073621.1-201ENST00000392730 636 ntBASIC16.69■□□□□ 0.26
PCDHB11Q9Y5F2 LBH-203ENST00000404397 543 ntTSL 4 BASIC16.69■□□□□ 0.26
PCDHB11Q9Y5F2 ODF3B-204ENST00000405135 917 ntTSL 5 BASIC16.69■□□□□ 0.26
PCDHB11Q9Y5F2 AL135791.1-201ENST00000429214 826 ntTSL 5 BASIC16.69■□□□□ 0.26
PCDHB11Q9Y5F2 MRFAP1-203ENST00000507420 563 ntAPPRIS P1 TSL 4 BASIC16.69■□□□□ 0.26
PCDHB11Q9Y5F2 TRMT112-202ENST00000535126 704 ntTSL 2 BASIC16.69■□□□□ 0.26
PCDHB11Q9Y5F2 LRRC28-210ENST00000558879 581 ntTSL 4 BASIC16.69■□□□□ 0.26
PCDHB11Q9Y5F2 CMTM3-205ENST00000562707 714 ntAPPRIS P1 TSL 3 BASIC16.69■□□□□ 0.26
PCDHB11Q9Y5F2 TWSG1-202ENST00000581641 1119 ntTSL 2 BASIC16.69■□□□□ 0.26
PCDHB11Q9Y5F2 AC002985.2-201ENST00000601106 957 ntTSL 4 BASIC16.69■□□□□ 0.26
PCDHB11Q9Y5F2 AC004706.3-202ENST00000621574 984 ntBASIC16.69■□□□□ 0.26
PCDHB11Q9Y5F2 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
PCDHB11Q9Y5F2 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
PCDHB11Q9Y5F2 ZBTB32-201ENST00000262630 1960 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
PCDHB11Q9Y5F2 NFATC4-202ENST00000413692 5700 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
PCDHB11Q9Y5F2 PROSER1-201ENST00000352251 5168 ntAPPRIS P2 TSL 1 (best) BASIC16.69■□□□□ 0.26
PCDHB11Q9Y5F2 CBLC-202ENST00000341505 1441 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
PCDHB11Q9Y5F2 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC16.69■□□□□ 0.26
PCDHB11Q9Y5F2 NF2-208ENST00000403435 2568 ntTSL 5 BASIC16.69■□□□□ 0.26
PCDHB11Q9Y5F2 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC16.69■□□□□ 0.26
PCDHB11Q9Y5F2 ZNF561-AS1-204ENST00000587536 1799 ntTSL 2 BASIC16.69■□□□□ 0.26
PCDHB11Q9Y5F2 GXYLT2-201ENST00000389617 3260 ntAPPRIS P1 TSL 5 BASIC16.69■□□□□ 0.26
PCDHB11Q9Y5F2 MCF2L-203ENST00000375604 6445 ntAPPRIS P3 TSL 2 BASIC16.69■□□□□ 0.26
PCDHB11Q9Y5F2 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
PCDHB11Q9Y5F2 SHISA6-203ENST00000432116 7518 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
PCDHB11Q9Y5F2 ITGB2-AS1-202ENST00000441379 2282 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
PCDHB11Q9Y5F2 TBC1D4-202ENST00000377636 6364 ntAPPRIS P3 TSL 2 BASIC16.68■□□□□ 0.26
PCDHB11Q9Y5F2 JKAMP-215ENST00000616435 2338 ntTSL 5 BASIC16.68■□□□□ 0.26
PCDHB11Q9Y5F2 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC16.68■□□□□ 0.26
PCDHB11Q9Y5F2 SYCE1-203ENST00000368517 1377 ntAPPRIS P3 TSL 5 BASIC16.68■□□□□ 0.26
PCDHB11Q9Y5F2 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC16.68■□□□□ 0.26
PCDHB11Q9Y5F2 SAMD11-217ENST00000622503 2557 ntAPPRIS ALT2 TSL 5 BASIC16.68■□□□□ 0.26
PCDHB11Q9Y5F2 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
PCDHB11Q9Y5F2 RGN-202ENST00000352078 1611 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
PCDHB11Q9Y5F2 SPDEF-201ENST00000374037 1895 ntAPPRIS P3 TSL 1 (best) BASIC16.68■□□□□ 0.26
PCDHB11Q9Y5F2 KRTCAP2-201ENST00000295682 552 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 37.5 ms