Protein–RNA interactions for Protein: Q9NZQ3

NCKIPSD, NCK-interacting protein with SH3 domain, humanhuman

Predictions only

Length 722 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NCKIPSDQ9NZQ3 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC17.25■□□□□ 0.35
NCKIPSDQ9NZQ3 AFG3L1P-210ENST00000431757 569 ntTSL 4 BASIC17.25■□□□□ 0.35
NCKIPSDQ9NZQ3 DNAJB3-201ENST00000446806 729 ntBASIC17.25■□□□□ 0.35
NCKIPSDQ9NZQ3 RNA5SP416-201ENST00000516838 111 ntBASIC17.25■□□□□ 0.35
NCKIPSDQ9NZQ3 FLJ20021-201ENST00000527564 790 ntTSL 2 BASIC17.25■□□□□ 0.35
NCKIPSDQ9NZQ3 AC040169.1-201ENST00000565382 521 ntBASIC17.25■□□□□ 0.35
NCKIPSDQ9NZQ3 ZPBP2-204ENST00000584588 1277 ntTSL 5 BASIC17.25■□□□□ 0.35
NCKIPSDQ9NZQ3 FAM71E1-202ENST00000595790 1225 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
NCKIPSDQ9NZQ3 AC140113.2-201ENST00000604370 208 ntBASIC17.25■□□□□ 0.35
NCKIPSDQ9NZQ3 SELENOM-210ENST00000611680 689 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
NCKIPSDQ9NZQ3 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC17.25■□□□□ 0.35
NCKIPSDQ9NZQ3 PRAG1-201ENST00000615670 4903 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
NCKIPSDQ9NZQ3 NAT6-205ENST00000443842 1820 ntAPPRIS ALT2 TSL 2 BASIC17.25■□□□□ 0.35
NCKIPSDQ9NZQ3 ABHD3-209ENST00000580981 1836 ntTSL 5 BASIC17.25■□□□□ 0.35
NCKIPSDQ9NZQ3 CDK19-202ENST00000368911 6246 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
NCKIPSDQ9NZQ3 SYT6-205ENST00000609117 4424 ntTSL 5 BASIC17.25■□□□□ 0.35
NCKIPSDQ9NZQ3 ITSN2-201ENST00000355123 6300 ntAPPRIS P4 TSL 1 (best) BASIC17.25■□□□□ 0.35
NCKIPSDQ9NZQ3 SALL3-202ENST00000537592 6555 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
NCKIPSDQ9NZQ3 GUCY1B3-206ENST00000507146 2709 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
NCKIPSDQ9NZQ3 NAA50-201ENST00000240922 6135 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
NCKIPSDQ9NZQ3 HYAL3-202ENST00000359051 1635 ntTSL 5 BASIC17.25■□□□□ 0.35
NCKIPSDQ9NZQ3 SYT3-202ENST00000593901 2836 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
NCKIPSDQ9NZQ3 FBXO18-203ENST00000397269 3640 ntTSL 5 BASIC17.25■□□□□ 0.35
NCKIPSDQ9NZQ3 DCLK2-204ENST00000506325 2298 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
NCKIPSDQ9NZQ3 JMJD6-205ENST00000585429 1330 ntTSL 5 BASIC17.24■□□□□ 0.35
NCKIPSDQ9NZQ3 C2orf27B-201ENST00000623129 1325 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
NCKIPSDQ9NZQ3 THEM4-201ENST00000368814 2377 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
NCKIPSDQ9NZQ3 CCNI2-204ENST00000614847 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
NCKIPSDQ9NZQ3 ZNF500-201ENST00000219478 5880 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
NCKIPSDQ9NZQ3 TRAF3IP1-202ENST00000391993 4003 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
NCKIPSDQ9NZQ3 FNDC5-201ENST00000373471 2732 ntAPPRIS ALT2 TSL 2 BASIC17.24■□□□□ 0.35
NCKIPSDQ9NZQ3 PHGDH-208ENST00000641023 2096 ntAPPRIS P1 BASIC17.24■□□□□ 0.35
NCKIPSDQ9NZQ3 SIGLEC16-201ENST00000599858 1437 ntBASIC17.24■□□□□ 0.35
NCKIPSDQ9NZQ3 KLHDC7B-201ENST00000395676 2991 ntAPPRIS P1 BASIC17.24■□□□□ 0.35
NCKIPSDQ9NZQ3 NCAPD2-201ENST00000315579 5548 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
NCKIPSDQ9NZQ3 MYB-205ENST00000367814 3302 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
NCKIPSDQ9NZQ3 OTOS-202ENST00000391989 645 ntAPPRIS P1 TSL 3 BASIC17.24■□□□□ 0.35
NCKIPSDQ9NZQ3 KRT18P3-201ENST00000451602 1288 ntBASIC17.24■□□□□ 0.35
NCKIPSDQ9NZQ3 PGAM5P1-201ENST00000518923 814 ntBASIC17.24■□□□□ 0.35
NCKIPSDQ9NZQ3 CHMP1A-208ENST00000550102 803 ntTSL 5 BASIC17.24■□□□□ 0.35
NCKIPSDQ9NZQ3 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC17.24■□□□□ 0.35
NCKIPSDQ9NZQ3 MIR3687-2-201ENST00000577708 61 ntBASIC17.24■□□□□ 0.35
NCKIPSDQ9NZQ3 TMED1-207ENST00000591695 809 ntTSL 5 BASIC17.24■□□□□ 0.35
NCKIPSDQ9NZQ3 AL139327.4-201ENST00000612362 153 ntBASIC17.24■□□□□ 0.35
NCKIPSDQ9NZQ3 TEX264-216ENST00000614067 1174 ntAPPRIS ALT2 TSL 3 BASIC17.24■□□□□ 0.35
NCKIPSDQ9NZQ3 MIR3687-1-201ENST00000614492 61 ntBASIC17.24■□□□□ 0.35
NCKIPSDQ9NZQ3 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC17.24■□□□□ 0.35
NCKIPSDQ9NZQ3 SATB2-202ENST00000417098 5730 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
NCKIPSDQ9NZQ3 RPAIN-203ENST00000381209 1535 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
NCKIPSDQ9NZQ3 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC17.24■□□□□ 0.35
NCKIPSDQ9NZQ3 DYDC2-202ENST00000372197 2022 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
NCKIPSDQ9NZQ3 TSC2-204ENST00000401874 5421 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
NCKIPSDQ9NZQ3 FAM174B-201ENST00000327355 2792 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
NCKIPSDQ9NZQ3 PJA1-201ENST00000361478 2755 ntAPPRIS P4 TSL 1 (best) BASIC17.24■□□□□ 0.35
NCKIPSDQ9NZQ3 HRASLS5-206ENST00000540857 3032 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
NCKIPSDQ9NZQ3 UGP2-202ENST00000394417 2136 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
NCKIPSDQ9NZQ3 TRIM17-201ENST00000295033 1730 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
NCKIPSDQ9NZQ3 CBWD1-202ENST00000356521 1706 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
NCKIPSDQ9NZQ3 TRIM17-204ENST00000366698 1748 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
NCKIPSDQ9NZQ3 PPOX-202ENST00000367999 1740 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
NCKIPSDQ9NZQ3 EWSAT1-206ENST00000558922 1725 ntTSL 5 BASIC17.24■□□□□ 0.35
NCKIPSDQ9NZQ3 ETV4-211ENST00000591713 1727 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
NCKIPSDQ9NZQ3 NDUFV1-223ENST00000532303 1493 ntTSL 2 BASIC17.24■□□□□ 0.35
NCKIPSDQ9NZQ3 TRIM33-201ENST00000358465 8339 ntAPPRIS P4 TSL 1 (best) BASIC17.24■□□□□ 0.35
NCKIPSDQ9NZQ3 ZNF454-201ENST00000320129 2332 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
NCKIPSDQ9NZQ3 RHNO1-209ENST00000618250 2070 ntAPPRIS P3 TSL 4 BASIC17.24■□□□□ 0.35
NCKIPSDQ9NZQ3 AP3D1-201ENST00000345016 4870 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
NCKIPSDQ9NZQ3 RHBDF1P1-201ENST00000427504 1941 ntBASIC17.23■□□□□ 0.35
NCKIPSDQ9NZQ3 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
NCKIPSDQ9NZQ3 AC060834.1-201ENST00000443027 2032 ntBASIC17.23■□□□□ 0.35
NCKIPSDQ9NZQ3 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC17.23■□□□□ 0.35
NCKIPSDQ9NZQ3 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC17.23■□□□□ 0.35
NCKIPSDQ9NZQ3 CDH6-205ENST00000514738 2569 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
NCKIPSDQ9NZQ3 PLGRKT-201ENST00000223864 932 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
NCKIPSDQ9NZQ3 DPM3-203ENST00000368400 409 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
NCKIPSDQ9NZQ3 CREM-211ENST00000374726 1207 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
NCKIPSDQ9NZQ3 MOB1B-202ENST00000396051 1107 ntTSL 2 BASIC17.23■□□□□ 0.35
NCKIPSDQ9NZQ3 IMP4-203ENST00000409935 958 ntTSL 5 BASIC17.23■□□□□ 0.35
NCKIPSDQ9NZQ3 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC17.23■□□□□ 0.35
NCKIPSDQ9NZQ3 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC17.23■□□□□ 0.35
NCKIPSDQ9NZQ3 BPHL-208ENST00000434640 1186 ntTSL 5 BASIC17.23■□□□□ 0.35
NCKIPSDQ9NZQ3 AC091182.1-202ENST00000518765 713 ntTSL 2 BASIC17.23■□□□□ 0.35
NCKIPSDQ9NZQ3 ETFA-208ENST00000559602 792 ntTSL 3 BASIC17.23■□□□□ 0.35
NCKIPSDQ9NZQ3 AC012640.2-201ENST00000561606 901 ntBASIC17.23■□□□□ 0.35
NCKIPSDQ9NZQ3 AC106782.2-201ENST00000563252 992 ntTSL 3 BASIC17.23■□□□□ 0.35
NCKIPSDQ9NZQ3 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC17.23■□□□□ 0.35
NCKIPSDQ9NZQ3 IER2-202ENST00000587885 1291 ntAPPRIS P1 TSL 3 BASIC17.23■□□□□ 0.35
NCKIPSDQ9NZQ3 AC005944.1-201ENST00000592758 564 ntTSL 3 BASIC17.23■□□□□ 0.35
NCKIPSDQ9NZQ3 AL356488.2-201ENST00000602755 427 ntBASIC17.23■□□□□ 0.35
NCKIPSDQ9NZQ3 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC17.23■□□□□ 0.35
NCKIPSDQ9NZQ3 AD001527.2-201ENST00000622994 785 ntBASIC17.23■□□□□ 0.35
NCKIPSDQ9NZQ3 AC005593.1-201ENST00000624894 515 ntBASIC17.23■□□□□ 0.35
NCKIPSDQ9NZQ3 TCAF2-203ENST00000425618 2448 ntTSL 2 BASIC17.23■□□□□ 0.35
NCKIPSDQ9NZQ3 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
NCKIPSDQ9NZQ3 TOM1L2-207ENST00000535933 1748 ntTSL 2 BASIC17.23■□□□□ 0.35
NCKIPSDQ9NZQ3 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC17.23■□□□□ 0.35
NCKIPSDQ9NZQ3 PCDHA2-201ENST00000378132 2626 ntAPPRIS ALT2 BASIC17.23■□□□□ 0.35
NCKIPSDQ9NZQ3 SOCS7-201ENST00000612932 7857 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
NCKIPSDQ9NZQ3 TMEM119-201ENST00000392806 2707 ntAPPRIS P2 TSL 1 (best) BASIC17.23■□□□□ 0.35
NCKIPSDQ9NZQ3 GSS-201ENST00000216951 1922 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 53 ms