Protein–RNA interactions for Protein: Q9NP77

SSU72, RNA polymerase II subunit A C-terminal domain phosphatase SSU72, humanhuman

Known RBP Predictions only

Length 194 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSU72Q9NP77 ATXN2-201ENST00000377617 4702 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
SSU72Q9NP77 TMEM229B-201ENST00000357461 4068 ntAPPRIS P1 TSL 2 BASIC16.91■□□□□ 0.3
SSU72Q9NP77 C16orf71-201ENST00000299320 2722 ntAPPRIS P2 TSL 1 (best) BASIC16.9■□□□□ 0.3
SSU72Q9NP77 TMEM132E-201ENST00000321639 5631 ntAPPRIS ALT2 TSL 5 BASIC16.9■□□□□ 0.3
SSU72Q9NP77 CARNS1-201ENST00000307823 3942 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
SSU72Q9NP77 ADORA1-203ENST00000367235 2219 ntTSL 2 BASIC16.9■□□□□ 0.3
SSU72Q9NP77 SSFA2-201ENST00000320370 4965 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
SSU72Q9NP77 DUSP8-202ENST00000397374 4480 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
SSU72Q9NP77 KLC1-206ENST00000389744 3250 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
SSU72Q9NP77 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC16.9■□□□□ 0.3
SSU72Q9NP77 TDRKH-202ENST00000368823 2751 ntAPPRIS ALT1 TSL 2 BASIC16.9■□□□□ 0.3
SSU72Q9NP77 TMED7-TICAM2-201ENST00000282382 3491 ntAPPRIS P1 TSL 2 BASIC16.9■□□□□ 0.3
SSU72Q9NP77 TBL2-205ENST00000432538 1573 ntTSL 2 BASIC16.9■□□□□ 0.3
SSU72Q9NP77 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
SSU72Q9NP77 B4GALNT4-201ENST00000329962 3444 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
SSU72Q9NP77 MPP1-205ENST00000413259 2195 ntTSL 2 BASIC16.9■□□□□ 0.3
SSU72Q9NP77 NXPH2-201ENST00000272641 1052 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
SSU72Q9NP77 KCNG3-201ENST00000306078 3824 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
SSU72Q9NP77 RPLP2-201ENST00000321153 781 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
SSU72Q9NP77 PIEZO1-202ENST00000327397 1246 ntTSL 2 BASIC16.9■□□□□ 0.3
SSU72Q9NP77 BOLA3-202ENST00000327428 639 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
SSU72Q9NP77 FMR1-202ENST00000334557 1295 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
SSU72Q9NP77 KCNK7-202ENST00000342202 1283 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
SSU72Q9NP77 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
SSU72Q9NP77 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC16.9■□□□□ 0.3
SSU72Q9NP77 YBX1P2-201ENST00000489612 999 ntBASIC16.9■□□□□ 0.3
SSU72Q9NP77 AC103957.2-201ENST00000521218 510 ntTSL 2 BASIC16.9■□□□□ 0.3
SSU72Q9NP77 MYL6-203ENST00000536128 1221 ntTSL 2 BASIC16.9■□□□□ 0.3
SSU72Q9NP77 HYMAI.1-201ENST00000620949 238 ntBASIC16.9■□□□□ 0.3
SSU72Q9NP77 PSME3-202ENST00000441946 2944 ntTSL 2 BASIC16.9■□□□□ 0.3
SSU72Q9NP77 DIABLO-208ENST00000464942 2569 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
SSU72Q9NP77 LGALS8-AS1-201ENST00000487567 1457 ntBASIC16.9■□□□□ 0.3
SSU72Q9NP77 FOS-208ENST00000555686 1496 ntTSL 2 BASIC16.9■□□□□ 0.3
SSU72Q9NP77 SLC29A1-205ENST00000371740 2219 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
SSU72Q9NP77 DUSP8-201ENST00000331588 4455 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
SSU72Q9NP77 ALOX15-205ENST00000574640 2422 ntTSL 2 BASIC16.9■□□□□ 0.3
SSU72Q9NP77 COL4A3BP-204ENST00000405807 2843 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
SSU72Q9NP77 CDIP1-209ENST00000567695 2062 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
SSU72Q9NP77 SIGLEC10-201ENST00000339313 2256 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
SSU72Q9NP77 MIEF1-202ENST00000402881 2269 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
SSU72Q9NP77 ANKRD35-202ENST00000544626 3093 ntTSL 5 BASIC16.9■□□□□ 0.3
SSU72Q9NP77 PFDN6-206ENST00000463584 1915 ntTSL 3 BASIC16.9■□□□□ 0.3
SSU72Q9NP77 TBC1D4-202ENST00000377636 6364 ntAPPRIS P3 TSL 2 BASIC16.9■□□□□ 0.3
SSU72Q9NP77 SLC46A2-201ENST00000374228 2502 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
SSU72Q9NP77 ZNF764-201ENST00000252797 2738 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
SSU72Q9NP77 SHANK1-201ENST00000293441 6643 ntAPPRIS P2 TSL 1 (best) BASIC16.9■□□□□ 0.3
SSU72Q9NP77 PORCN-205ENST00000367574 1368 ntAPPRIS ALT1 TSL 1 (best) BASIC16.89■□□□□ 0.3
SSU72Q9NP77 PORCN-214ENST00000537758 1371 ntAPPRIS ALT1 TSL 1 (best) BASIC16.89■□□□□ 0.3
SSU72Q9NP77 ALDH3A1-212ENST00000494157 1572 ntTSL 3 BASIC16.89■□□□□ 0.3
SSU72Q9NP77 SF3A2-201ENST00000221494 1963 ntAPPRIS P2 TSL 1 (best) BASIC16.89■□□□□ 0.3
SSU72Q9NP77 KDM6A-213ENST00000611820 5924 ntTSL 1 (best) BASIC16.89■□□□□ 0.3
SSU72Q9NP77 DDX5-201ENST00000225792 2554 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.3
SSU72Q9NP77 MGAT1-201ENST00000307826 2761 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.3
SSU72Q9NP77 MAD1L1-202ENST00000399654 2762 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.3
SSU72Q9NP77 TSC2-204ENST00000401874 5421 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
SSU72Q9NP77 PDE1C-202ENST00000396182 2420 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
SSU72Q9NP77 AC126177.1-201ENST00000547829 2218 ntBASIC16.89■□□□□ 0.29
SSU72Q9NP77 MRPL49-201ENST00000279242 2019 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
SSU72Q9NP77 PRX-202ENST00000324001 4855 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
SSU72Q9NP77 KRT8P49-201ENST00000604166 1432 ntBASIC16.89■□□□□ 0.29
SSU72Q9NP77 IL11-201ENST00000264563 2281 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
SSU72Q9NP77 RAP1GDS1-203ENST00000380158 2085 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
SSU72Q9NP77 CBFB-201ENST00000290858 3136 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.29
SSU72Q9NP77 SLFNL1-203ENST00000372611 1865 ntAPPRIS ALT2 TSL 2 BASIC16.89■□□□□ 0.29
SSU72Q9NP77 ZNF574-202ENST00000359044 2940 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
SSU72Q9NP77 GGT3P-204ENST00000453783 1664 ntBASIC16.89■□□□□ 0.29
SSU72Q9NP77 ADAM15-205ENST00000360674 2732 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
SSU72Q9NP77 KRT76-201ENST00000332411 2529 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
SSU72Q9NP77 ZFAND6-207ENST00000558494 1472 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
SSU72Q9NP77 SBNO2-204ENST00000587024 4861 ntAPPRIS ALT2 TSL 2 BASIC16.89■□□□□ 0.29
SSU72Q9NP77 NUDT8-201ENST00000301490 809 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.29
SSU72Q9NP77 CLDN7-202ENST00000397317 1228 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
SSU72Q9NP77 CTNS-203ENST00000399306 803 ntTSL 3 BASIC16.89■□□□□ 0.29
SSU72Q9NP77 AL845331.1-201ENST00000424978 1190 ntBASIC16.89■□□□□ 0.29
SSU72Q9NP77 LIN28AP1-201ENST00000429574 405 ntBASIC16.89■□□□□ 0.29
SSU72Q9NP77 TSFM-208ENST00000543727 651 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
SSU72Q9NP77 AC010203.1-204ENST00000548782 407 ntBASIC16.89■□□□□ 0.29
SSU72Q9NP77 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC16.89■□□□□ 0.29
SSU72Q9NP77 AL807752.6-202ENST00000622933 765 ntAPPRIS P5 TSL 3 BASIC16.89■□□□□ 0.29
SSU72Q9NP77 SHISA5-209ENST00000443308 1933 ntTSL 2 BASIC16.89■□□□□ 0.29
SSU72Q9NP77 LINC00668-206ENST00000581725 1902 ntTSL 2 BASIC16.89■□□□□ 0.29
SSU72Q9NP77 LINC00554-201ENST00000564841 3011 ntBASIC16.89■□□□□ 0.29
SSU72Q9NP77 ELF2-207ENST00000510408 1965 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
SSU72Q9NP77 AL354813.1-201ENST00000526566 2437 ntTSL 5 BASIC16.89■□□□□ 0.29
SSU72Q9NP77 AC012485.3-201ENST00000637634 2424 ntTSL 5 BASIC16.89■□□□□ 0.29
SSU72Q9NP77 AIFM1-202ENST00000319908 2248 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
SSU72Q9NP77 C14orf93-202ENST00000341470 2221 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
SSU72Q9NP77 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC16.89■□□□□ 0.29
SSU72Q9NP77 RUNX2-201ENST00000359524 5390 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
SSU72Q9NP77 TFAP2A-AS1-201ENST00000420777 1575 ntTSL 5 BASIC16.89■□□□□ 0.29
SSU72Q9NP77 HLA-DQB2-231ENST00000435145 2026 ntBASIC16.89■□□□□ 0.29
SSU72Q9NP77 SOX30-202ENST00000311371 2716 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
SSU72Q9NP77 NGFR-201ENST00000172229 3417 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
SSU72Q9NP77 AXIN2-202ENST00000375702 2541 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
SSU72Q9NP77 AC097376.2-201ENST00000608661 2510 ntTSL 5 BASIC16.89■□□□□ 0.29
SSU72Q9NP77 SCAP-201ENST00000265565 4394 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
SSU72Q9NP77 AC006277.1-201ENST00000624348 1610 ntBASIC16.88■□□□□ 0.29
SSU72Q9NP77 GYG1-201ENST00000296048 1890 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
SSU72Q9NP77 ADAM15-208ENST00000447332 2146 ntAPPRIS ALT2 TSL 2 BASIC16.88■□□□□ 0.29
SSU72Q9NP77 GHDC-207ENST00000587427 2396 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 39 ms