Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC16.89■□□□□ 0.29
TRIM39Q9HCM9 CRCP-205ENST00000431089 942 ntTSL 2 BASIC16.89■□□□□ 0.29
TRIM39Q9HCM9 ORAI2-205ENST00000478730 5531 ntAPPRIS P1 TSL 2 BASIC16.89■□□□□ 0.29
TRIM39Q9HCM9 AP000442.1-201ENST00000533552 769 ntTSL 5 BASIC16.89■□□□□ 0.29
TRIM39Q9HCM9 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC16.89■□□□□ 0.29
TRIM39Q9HCM9 ICAM2-205ENST00000578379 1064 ntTSL 5 BASIC16.89■□□□□ 0.29
TRIM39Q9HCM9 ICAM2-206ENST00000578892 1056 ntTSL 3 BASIC16.89■□□□□ 0.29
TRIM39Q9HCM9 OAZ1-202ENST00000582888 969 ntAPPRIS ALT1 TSL 5 BASIC16.89■□□□□ 0.29
TRIM39Q9HCM9 AL671883.3-201ENST00000603274 991 ntBASIC16.89■□□□□ 0.29
TRIM39Q9HCM9 PLEKHG4-205ENST00000450733 4480 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
TRIM39Q9HCM9 C6orf132-201ENST00000341865 6210 ntAPPRIS P2 TSL 5 BASIC16.89■□□□□ 0.29
TRIM39Q9HCM9 LINC02012-201ENST00000608206 1725 ntBASIC16.89■□□□□ 0.29
TRIM39Q9HCM9 CLDN7-201ENST00000360325 1542 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
TRIM39Q9HCM9 L2HGDH-202ENST00000267436 6414 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
TRIM39Q9HCM9 FMO5-208ENST00000578284 1784 ntTSL 5 BASIC16.89■□□□□ 0.29
TRIM39Q9HCM9 GABRB3-202ENST00000311550 5781 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
TRIM39Q9HCM9 WIF1-201ENST00000286574 2238 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
TRIM39Q9HCM9 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC16.89■□□□□ 0.29
TRIM39Q9HCM9 ZBTB47-202ENST00000505904 2456 ntTSL 5 BASIC16.89■□□□□ 0.29
TRIM39Q9HCM9 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
TRIM39Q9HCM9 AC026954.2-202ENST00000575474 2571 ntAPPRIS P5 TSL 5 BASIC16.88■□□□□ 0.29
TRIM39Q9HCM9 ASB6-203ENST00000450050 4535 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
TRIM39Q9HCM9 CACNA1I-201ENST00000401624 6740 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
TRIM39Q9HCM9 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
TRIM39Q9HCM9 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
TRIM39Q9HCM9 ZBTB7C-221ENST00000590800 4947 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
TRIM39Q9HCM9 ATOH1-201ENST00000306011 2212 ntAPPRIS P1 BASIC16.88■□□□□ 0.29
TRIM39Q9HCM9 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC16.88■□□□□ 0.29
TRIM39Q9HCM9 NYX-201ENST00000342595 2713 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
TRIM39Q9HCM9 CACNA2D2-201ENST00000266039 5476 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
TRIM39Q9HCM9 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC16.88■□□□□ 0.29
TRIM39Q9HCM9 MBOAT1-201ENST00000324607 1794 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
TRIM39Q9HCM9 CDIPT-209ENST00000569956 1532 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
TRIM39Q9HCM9 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC16.88■□□□□ 0.29
TRIM39Q9HCM9 AFG3L1P-210ENST00000431757 569 ntTSL 4 BASIC16.88■□□□□ 0.29
TRIM39Q9HCM9 ARPC4-203ENST00000433034 926 ntTSL 3 BASIC16.88■□□□□ 0.29
TRIM39Q9HCM9 HYAL1-206ENST00000447605 666 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
TRIM39Q9HCM9 AC087163.2-201ENST00000457299 853 ntBASIC16.88■□□□□ 0.29
TRIM39Q9HCM9 L2HGDH-205ENST00000555423 841 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
TRIM39Q9HCM9 OR7E47P-204ENST00000575924 449 ntBASIC16.88■□□□□ 0.29
TRIM39Q9HCM9 AC140113.2-201ENST00000604370 208 ntBASIC16.88■□□□□ 0.29
TRIM39Q9HCM9 MAGIX-204ENST00000614074 778 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
TRIM39Q9HCM9 AC244517.5-205ENST00000623615 575 ntTSL 4 BASIC16.88■□□□□ 0.29
TRIM39Q9HCM9 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
TRIM39Q9HCM9 CYP2W1-201ENST00000308919 2304 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
TRIM39Q9HCM9 AL645608.8-201ENST00000606034 2086 ntBASIC16.88■□□□□ 0.29
TRIM39Q9HCM9 VAV2-203ENST00000406606 4691 ntAPPRIS P2 TSL 1 (best) BASIC16.88■□□□□ 0.29
TRIM39Q9HCM9 TLCD2-201ENST00000330676 5971 ntAPPRIS P1 TSL 2 BASIC16.88■□□□□ 0.29
TRIM39Q9HCM9 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC16.88■□□□□ 0.29
TRIM39Q9HCM9 RABGAP1L-204ENST00000357444 2605 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
TRIM39Q9HCM9 INPP5J-204ENST00000402238 1564 ntTSL 2 BASIC16.88■□□□□ 0.29
TRIM39Q9HCM9 RBPMS-203ENST00000339877 1341 ntAPPRIS ALT1 TSL 1 (best) BASIC16.88■□□□□ 0.29
TRIM39Q9HCM9 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC16.88■□□□□ 0.29
TRIM39Q9HCM9 CROCCP1-201ENST00000426910 5675 ntBASIC16.88■□□□□ 0.29
TRIM39Q9HCM9 KCNV2-201ENST00000382082 2186 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
TRIM39Q9HCM9 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
TRIM39Q9HCM9 B4GALNT2-201ENST00000300404 1906 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
TRIM39Q9HCM9 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
TRIM39Q9HCM9 OSBP2-202ENST00000401475 2468 ntTSL 2 BASIC16.88■□□□□ 0.29
TRIM39Q9HCM9 RHBDF1P1-201ENST00000427504 1941 ntBASIC16.88■□□□□ 0.29
TRIM39Q9HCM9 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC16.88■□□□□ 0.29
TRIM39Q9HCM9 BCL11B-202ENST00000357195 7559 ntAPPRIS P4 TSL 1 (best) BASIC16.88■□□□□ 0.29
TRIM39Q9HCM9 GRAMD1B-214ENST00000635736 2814 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
TRIM39Q9HCM9 RMDN3-202ENST00000338376 2251 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
TRIM39Q9HCM9 SLC1A4-201ENST00000234256 4561 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
TRIM39Q9HCM9 CDH6-205ENST00000514738 2569 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
TRIM39Q9HCM9 ZNF84-201ENST00000327668 7162 ntAPPRIS P2 TSL 1 (best) BASIC16.87■□□□□ 0.29
TRIM39Q9HCM9 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC16.87■□□□□ 0.29
TRIM39Q9HCM9 WDR74-204ENST00000525239 1736 ntAPPRIS P1 TSL 2 BASIC16.87■□□□□ 0.29
TRIM39Q9HCM9 PRRT4-205ENST00000489835 2313 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
TRIM39Q9HCM9 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC16.87■□□□□ 0.29
TRIM39Q9HCM9 NRBP2-202ENST00000442628 3587 ntAPPRIS P1 TSL 2 BASIC16.87■□□□□ 0.29
TRIM39Q9HCM9 VAV3-210ENST00000527011 4510 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
TRIM39Q9HCM9 UGP2-202ENST00000394417 2136 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
TRIM39Q9HCM9 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
TRIM39Q9HCM9 RPAIN-203ENST00000381209 1535 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
TRIM39Q9HCM9 UBR3-201ENST00000272793 8005 ntAPPRIS P1 TSL 5 BASIC16.87■□□□□ 0.29
TRIM39Q9HCM9 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC16.87■□□□□ 0.29
TRIM39Q9HCM9 FAM46A-201ENST00000320172 5609 ntAPPRIS P2 TSL 1 (best) BASIC16.87■□□□□ 0.29
TRIM39Q9HCM9 BACE2-203ENST00000347667 8764 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
TRIM39Q9HCM9 VPS13B-201ENST00000355155 2822 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
TRIM39Q9HCM9 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC16.87■□□□□ 0.29
TRIM39Q9HCM9 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC16.87■□□□□ 0.29
TRIM39Q9HCM9 GOSR2-202ENST00000393456 788 ntTSL 3 BASIC16.87■□□□□ 0.29
TRIM39Q9HCM9 MED15P5-201ENST00000423150 992 ntBASIC16.87■□□□□ 0.29
TRIM39Q9HCM9 AC064807.1-202ENST00000423716 936 ntTSL 2 BASIC16.87■□□□□ 0.29
TRIM39Q9HCM9 AC007967.2-201ENST00000432613 625 ntBASIC16.87■□□□□ 0.29
TRIM39Q9HCM9 KRT18P3-201ENST00000451602 1288 ntBASIC16.87■□□□□ 0.29
TRIM39Q9HCM9 TMEM33-208ENST00000513702 1092 ntAPPRIS P1 TSL 5 BASIC16.87■□□□□ 0.29
TRIM39Q9HCM9 ANAPC11-210ENST00000574924 722 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
TRIM39Q9HCM9 C18orf63-201ENST00000579455 5127 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
TRIM39Q9HCM9 PPP1R16A-202ENST00000435887 2273 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
TRIM39Q9HCM9 SRSF12-201ENST00000452027 3599 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
TRIM39Q9HCM9 CPEB2-AS1-201ENST00000500394 1630 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
TRIM39Q9HCM9 PTPN21-208ENST00000556564 6166 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
TRIM39Q9HCM9 DNM1P34-201ENST00000567292 2276 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
TRIM39Q9HCM9 BTBD1-201ENST00000261721 3297 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
TRIM39Q9HCM9 FAM3D-201ENST00000358781 1319 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
TRIM39Q9HCM9 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
TRIM39Q9HCM9 PODXL-201ENST00000322985 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 47.8 ms