Protein–RNA interactions for Protein: Q9BRP4

PAAF1, Proteasomal ATPase-associated factor 1, humanhuman

Predictions only

Length 392 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PAAF1Q9BRP4 ADK-202ENST00000372734 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC18.05■□□□□ 0.48
PAAF1Q9BRP4 OSBP2-202ENST00000401475 2468 ntTSL 2 BASIC18.05■□□□□ 0.48
PAAF1Q9BRP4 BMP8B-201ENST00000372827 4822 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
PAAF1Q9BRP4 F12-201ENST00000253496 2049 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
PAAF1Q9BRP4 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC18.05■□□□□ 0.48
PAAF1Q9BRP4 PLXNB2-214ENST00000614805 1387 ntTSL 5 BASIC18.04■□□□□ 0.48
PAAF1Q9BRP4 TMEFF2-201ENST00000272771 2604 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
PAAF1Q9BRP4 AC073957.2-201ENST00000549241 1562 ntTSL 4 BASIC18.04■□□□□ 0.48
PAAF1Q9BRP4 PDCD5-203ENST00000419343 1799 ntTSL 2 BASIC18.04■□□□□ 0.48
PAAF1Q9BRP4 ABTB1-201ENST00000232744 1965 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
PAAF1Q9BRP4 SLC25A35-205ENST00000580340 1541 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
PAAF1Q9BRP4 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
PAAF1Q9BRP4 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
PAAF1Q9BRP4 STX6-201ENST00000258301 4851 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
PAAF1Q9BRP4 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
PAAF1Q9BRP4 ZBTB16-202ENST00000392996 2287 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
PAAF1Q9BRP4 NRN1L-201ENST00000339176 710 ntAPPRIS P2 TSL 1 (best) BASIC18.04■□□□□ 0.48
PAAF1Q9BRP4 MRPL9-202ENST00000368830 1296 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
PAAF1Q9BRP4 IL32-205ENST00000396890 1067 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
PAAF1Q9BRP4 GPS2P2-201ENST00000430745 888 ntBASIC18.04■□□□□ 0.48
PAAF1Q9BRP4 SLBP-205ENST00000488267 987 ntTSL 2 BASIC18.04■□□□□ 0.48
PAAF1Q9BRP4 AC020659.2-201ENST00000510176 585 ntTSL 4 BASIC18.04■□□□□ 0.48
PAAF1Q9BRP4 IL32-223ENST00000534507 1112 ntAPPRIS ALT2 TSL 2 BASIC18.04■□□□□ 0.48
PAAF1Q9BRP4 IL32-227ENST00000548652 812 ntAPPRIS ALT2 TSL 3 BASIC18.04■□□□□ 0.48
PAAF1Q9BRP4 IL32-233ENST00000552664 731 ntAPPRIS P4 TSL 3 BASIC18.04■□□□□ 0.48
PAAF1Q9BRP4 FAM177A1-207ENST00000554052 540 ntAPPRIS ALT2 TSL 2 BASIC18.04■□□□□ 0.48
PAAF1Q9BRP4 LINC01225-203ENST00000563550 1244 ntBASIC18.04■□□□□ 0.48
PAAF1Q9BRP4 TVP23B-206ENST00000574226 1080 ntAPPRIS ALT1 TSL 1 (best) BASIC18.04■□□□□ 0.48
PAAF1Q9BRP4 MIR4492-201ENST00000581627 80 ntBASIC18.04■□□□□ 0.48
PAAF1Q9BRP4 SELENOH-206ENST00000622257 1291 ntAPPRIS ALT1 TSL 5 BASIC18.04■□□□□ 0.48
PAAF1Q9BRP4 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC18.04■□□□□ 0.48
PAAF1Q9BRP4 LAT-203ENST00000395456 1616 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
PAAF1Q9BRP4 TACSTD2-201ENST00000371225 2351 ntAPPRIS P1 BASIC18.04■□□□□ 0.48
PAAF1Q9BRP4 CDKN1A-201ENST00000244741 2180 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
PAAF1Q9BRP4 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
PAAF1Q9BRP4 RAB3IP-207ENST00000483530 1755 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
PAAF1Q9BRP4 LINC01148-201ENST00000557527 1763 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
PAAF1Q9BRP4 ITGB5-201ENST00000296181 4372 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
PAAF1Q9BRP4 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
PAAF1Q9BRP4 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
PAAF1Q9BRP4 OR2C3-203ENST00000617752 2481 ntAPPRIS P1 BASIC18.04■□□□□ 0.48
PAAF1Q9BRP4 PIP5K1A-207ENST00000441902 2297 ntTSL 2 BASIC18.03■□□□□ 0.48
PAAF1Q9BRP4 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC18.03■□□□□ 0.48
PAAF1Q9BRP4 RABGGTA-201ENST00000216840 2088 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
PAAF1Q9BRP4 IRF1-202ENST00000405885 2061 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
PAAF1Q9BRP4 RPAIN-203ENST00000381209 1535 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
PAAF1Q9BRP4 OSR2-209ENST00000522510 1528 ntAPPRIS P1 TSL 2 BASIC18.03■□□□□ 0.48
PAAF1Q9BRP4 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
PAAF1Q9BRP4 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
PAAF1Q9BRP4 COBLL1-201ENST00000342193 4898 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
PAAF1Q9BRP4 ZSCAN25-201ENST00000262941 1652 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
PAAF1Q9BRP4 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC18.03■□□□□ 0.48
PAAF1Q9BRP4 ORAI2-202ENST00000403646 2528 ntAPPRIS P1 TSL 2 BASIC18.03■□□□□ 0.48
PAAF1Q9BRP4 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
PAAF1Q9BRP4 AC108860.2-201ENST00000562760 2183 ntBASIC18.03■□□□□ 0.48
PAAF1Q9BRP4 AFF2-204ENST00000370458 1488 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
PAAF1Q9BRP4 MYH14-208ENST00000598205 6137 ntAPPRIS P3 TSL 5 BASIC18.03■□□□□ 0.48
PAAF1Q9BRP4 CDIP1-207ENST00000564828 1636 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
PAAF1Q9BRP4 NUPR2-201ENST00000329309 603 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
PAAF1Q9BRP4 TMEM44-201ENST00000330115 1278 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
PAAF1Q9BRP4 C6orf99-202ENST00000367073 769 ntTSL 5 BASIC18.03■□□□□ 0.48
PAAF1Q9BRP4 WLS-203ENST00000370971 700 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
PAAF1Q9BRP4 TSSC4-202ENST00000380992 992 ntAPPRIS ALT2 TSL 5 BASIC18.03■□□□□ 0.48
PAAF1Q9BRP4 SPDYE2-202ENST00000432940 1209 ntAPPRIS P2 TSL 1 (best) BASIC18.03■□□□□ 0.48
PAAF1Q9BRP4 SPDYE2B-201ENST00000436228 1209 ntAPPRIS P2 TSL 1 (best) BASIC18.03■□□□□ 0.48
PAAF1Q9BRP4 OST4-202ENST00000447619 458 ntAPPRIS P1 TSL 2 BASIC18.03■□□□□ 0.48
PAAF1Q9BRP4 SPDYE5-201ENST00000455862 1209 ntAPPRIS P2 TSL 1 (best) BASIC18.03■□□□□ 0.48
PAAF1Q9BRP4 HILS1-201ENST00000504307 1219 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
PAAF1Q9BRP4 C8orf46-213ENST00000521495 557 ntTSL 4 BASIC18.03■□□□□ 0.48
PAAF1Q9BRP4 NR2C2AP-204ENST00000538165 891 ntTSL 2 BASIC18.03■□□□□ 0.48
PAAF1Q9BRP4 AC027243.1-201ENST00000559539 758 ntTSL 3 BASIC18.03■□□□□ 0.48
PAAF1Q9BRP4 C19orf33-202ENST00000588605 520 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
PAAF1Q9BRP4 NNAT-201ENST00000062104 1297 ntAPPRIS P4 TSL 1 (best) BASIC18.03■□□□□ 0.48
PAAF1Q9BRP4 BANP-227ENST00000626016 2144 ntTSL 2 BASIC18.03■□□□□ 0.48
PAAF1Q9BRP4 AL732314.4-201ENST00000627627 515 ntTSL 4 BASIC18.03■□□□□ 0.48
PAAF1Q9BRP4 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC18.03■□□□□ 0.48
PAAF1Q9BRP4 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC18.03■□□□□ 0.48
PAAF1Q9BRP4 CD99P1-204ENST00000435581 2788 ntTSL 2 BASIC18.03■□□□□ 0.48
PAAF1Q9BRP4 BCL7A-203ENST00000538010 6247 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
PAAF1Q9BRP4 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
PAAF1Q9BRP4 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
PAAF1Q9BRP4 PRKCI-201ENST00000295797 4950 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
PAAF1Q9BRP4 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC18.03■□□□□ 0.48
PAAF1Q9BRP4 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
PAAF1Q9BRP4 VPS13B-201ENST00000355155 2822 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
PAAF1Q9BRP4 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
PAAF1Q9BRP4 SLC35F5-201ENST00000245680 4412 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
PAAF1Q9BRP4 ZDHHC9-202ENST00000371064 2473 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
PAAF1Q9BRP4 PTHLH-202ENST00000395868 1674 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
PAAF1Q9BRP4 DMRTC2-204ENST00000596827 1675 ntTSL 2 BASIC18.03■□□□□ 0.48
PAAF1Q9BRP4 HDAC10-222ENST00000626012 2607 ntTSL 5 BASIC18.02■□□□□ 0.48
PAAF1Q9BRP4 PLEKHG5-207ENST00000400913 4698 ntAPPRIS P3 TSL 5 BASIC18.02■□□□□ 0.48
PAAF1Q9BRP4 KCNQ5-212ENST00000628967 3527 ntTSL 2 BASIC18.02■□□□□ 0.48
PAAF1Q9BRP4 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC18.02■□□□□ 0.48
PAAF1Q9BRP4 MXRA8-209ENST00000477278 2728 ntTSL 5 BASIC18.02■□□□□ 0.48
PAAF1Q9BRP4 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.48
PAAF1Q9BRP4 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
PAAF1Q9BRP4 UBXN2A-201ENST00000309033 6066 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
PAAF1Q9BRP4 SMARCC2-202ENST00000347471 3839 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.48
PAAF1Q9BRP4 STOML1-203ENST00000359750 984 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 91.3 ms