Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 SLC1A4-201ENST00000234256 4561 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
USP28Q96RU2 MED30-201ENST00000297347 985 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
USP28Q96RU2 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
USP28Q96RU2 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC19.46■□□□□ 0.71
USP28Q96RU2 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC19.46■□□□□ 0.71
USP28Q96RU2 TPM1-226ENST00000560959 925 ntTSL 2 BASIC19.46■□□□□ 0.71
USP28Q96RU2 AC026336.2-201ENST00000563922 763 ntTSL 2 BASIC19.46■□□□□ 0.71
USP28Q96RU2 NKAPP1-205ENST00000585790 367 ntBASIC19.46■□□□□ 0.71
USP28Q96RU2 AC020934.1-201ENST00000588469 739 ntTSL 3 BASIC19.46■□□□□ 0.71
USP28Q96RU2 REXO2-220ENST00000611665 1158 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
USP28Q96RU2 TP53I11-223ENST00000627720 195 ntTSL 5 BASIC19.46■□□□□ 0.71
USP28Q96RU2 ANKMY2-206ENST00000628652 1270 ntTSL 5 BASIC19.46■□□□□ 0.71
USP28Q96RU2 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC19.46■□□□□ 0.71
USP28Q96RU2 NGFR-201ENST00000172229 3417 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
USP28Q96RU2 DACH1-202ENST00000613252 5233 ntAPPRIS P2 TSL 1 (best) BASIC19.46■□□□□ 0.71
USP28Q96RU2 AC009163.2-201ENST00000460606 2125 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
USP28Q96RU2 EVPL-202ENST00000586740 6223 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
USP28Q96RU2 GDE1-201ENST00000353258 2958 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
USP28Q96RU2 PTHLH-202ENST00000395868 1674 ntAPPRIS P3 TSL 1 (best) BASIC19.46■□□□□ 0.71
USP28Q96RU2 KLHL31-201ENST00000370905 5743 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
USP28Q96RU2 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC19.45■□□□□ 0.7
USP28Q96RU2 UIMC1-201ENST00000377227 2570 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
USP28Q96RU2 PPP3CA-201ENST00000323055 4519 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
USP28Q96RU2 KLF10-202ENST00000395884 3659 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
USP28Q96RU2 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC19.45■□□□□ 0.7
USP28Q96RU2 RUNX1-207ENST00000437180 5967 ntAPPRIS P3 TSL 5 BASIC19.45■□□□□ 0.7
USP28Q96RU2 SGCB-201ENST00000381431 4431 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
USP28Q96RU2 LGALS3BP-218ENST00000591778 1961 ntTSL 2 BASIC19.45■□□□□ 0.7
USP28Q96RU2 TTC34-201ENST00000401095 8814 ntAPPRIS ALT2 TSL 5 BASIC19.45■□□□□ 0.7
USP28Q96RU2 AL139300.1-201ENST00000472726 2505 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
USP28Q96RU2 LINC00895-201ENST00000629028 1637 ntBASIC19.45■□□□□ 0.7
USP28Q96RU2 CDH23-205ENST00000398809 4533 ntTSL 5 BASIC19.45■□□□□ 0.7
USP28Q96RU2 MCL1-201ENST00000307940 1110 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
USP28Q96RU2 AL645608.6-201ENST00000418300 402 ntTSL 3 BASIC19.45■□□□□ 0.7
USP28Q96RU2 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC19.45■□□□□ 0.7
USP28Q96RU2 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC19.45■□□□□ 0.7
USP28Q96RU2 TERC-201ENST00000602385 541 ntBASIC19.45■□□□□ 0.7
USP28Q96RU2 LDHAL6A-203ENST00000615355 1042 ntTSL 5 BASIC19.45■□□□□ 0.7
USP28Q96RU2 TMEM114-203ENST00000620492 945 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
USP28Q96RU2 C16orf89-203ENST00000474471 1829 ntAPPRIS ALT2 TSL 5 BASIC19.45■□□□□ 0.7
USP28Q96RU2 ZNF57-201ENST00000306908 2003 ntAPPRIS P2 TSL 1 (best) BASIC19.45■□□□□ 0.7
USP28Q96RU2 ZNF57-205ENST00000614108 2002 ntAPPRIS ALT2 TSL 5 BASIC19.45■□□□□ 0.7
USP28Q96RU2 KLK3-201ENST00000326003 1463 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
USP28Q96RU2 LETM2-205ENST00000519476 2240 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
USP28Q96RU2 UNC5D-203ENST00000416672 3532 ntAPPRIS ALT2 TSL 5 BASIC19.45■□□□□ 0.7
USP28Q96RU2 CBL-204ENST00000634840 4813 ntAPPRIS ALT2 TSL 5 BASIC19.45■□□□□ 0.7
USP28Q96RU2 ZNF697-201ENST00000421812 5041 ntAPPRIS P1 TSL 3 BASIC19.45■□□□□ 0.7
USP28Q96RU2 GAS7-213ENST00000580865 2417 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
USP28Q96RU2 EDC3-202ENST00000426797 2093 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
USP28Q96RU2 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
USP28Q96RU2 F3-201ENST00000334047 2287 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
USP28Q96RU2 TRABD-202ENST00000380909 2272 ntAPPRIS P3 TSL 5 BASIC19.45■□□□□ 0.7
USP28Q96RU2 EFNB3-201ENST00000226091 3222 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
USP28Q96RU2 EYA2-201ENST00000317304 1540 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
USP28Q96RU2 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC19.45■□□□□ 0.7
USP28Q96RU2 C11orf49-204ENST00000395460 1916 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
USP28Q96RU2 ADGRG2-202ENST00000354791 4494 ntTSL 5 BASIC19.45■□□□□ 0.7
USP28Q96RU2 LINC02199-201ENST00000506655 2702 ntBASIC19.45■□□□□ 0.7
USP28Q96RU2 KIF16B-201ENST00000354981 5261 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
USP28Q96RU2 TRPC1-201ENST00000273482 4324 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
USP28Q96RU2 PDCD5-203ENST00000419343 1799 ntTSL 2 BASIC19.44■□□□□ 0.7
USP28Q96RU2 CYP46A1-201ENST00000261835 2181 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
USP28Q96RU2 MAPK8IP1-202ENST00000395629 3180 ntTSL 5 BASIC19.44■□□□□ 0.7
USP28Q96RU2 POM121C-208ENST00000615331 5835 ntAPPRIS P2 TSL 1 (best) BASIC19.44■□□□□ 0.7
USP28Q96RU2 LINC02370-201ENST00000428272 2009 ntTSL 5 BASIC19.44■□□□□ 0.7
USP28Q96RU2 ZMYM3-203ENST00000373981 1841 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
USP28Q96RU2 GPS1-228ENST00000624957 1825 ntAPPRIS ALT1 TSL 5 BASIC19.44■□□□□ 0.7
USP28Q96RU2 LANCL3-201ENST00000378619 3063 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
USP28Q96RU2 ITM2C-201ENST00000326407 1888 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
USP28Q96RU2 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
USP28Q96RU2 CXXC1-201ENST00000285106 2936 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
USP28Q96RU2 ATXN2-219ENST00000550104 4648 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
USP28Q96RU2 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC19.44■□□□□ 0.7
USP28Q96RU2 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC19.44■□□□□ 0.7
USP28Q96RU2 AL022326.1-202ENST00000641533 845 ntBASIC19.44■□□□□ 0.7
USP28Q96RU2 PLK2-215ENST00000617412 2792 ntTSL 5 BASIC19.44■□□□□ 0.7
USP28Q96RU2 EIF4ENIF1-206ENST00000397525 3695 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
USP28Q96RU2 SLC25A45-201ENST00000294187 2196 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
USP28Q96RU2 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
USP28Q96RU2 ABCF3-203ENST00000429586 2624 ntAPPRIS P2 TSL 1 (best) BASIC19.44■□□□□ 0.7
USP28Q96RU2 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
USP28Q96RU2 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC19.44■□□□□ 0.7
USP28Q96RU2 DVL1-202ENST00000378891 2926 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
USP28Q96RU2 FAM184A-201ENST00000338891 4141 ntAPPRIS P4 TSL 1 (best) BASIC19.44■□□□□ 0.7
USP28Q96RU2 PELI3-209ENST00000618547 2508 ntTSL 2 BASIC19.44■□□□□ 0.7
USP28Q96RU2 TRIM39-205ENST00000396551 3249 ntAPPRIS ALT2 TSL 5 BASIC19.44■□□□□ 0.7
USP28Q96RU2 CARNS1-201ENST00000307823 3942 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
USP28Q96RU2 BSG-202ENST00000346916 1605 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
USP28Q96RU2 HYAL1-202ENST00000320295 2324 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
USP28Q96RU2 ELN-221ENST00000445912 2583 ntAPPRIS ALT2 TSL 2 BASIC19.43■□□□□ 0.7
USP28Q96RU2 SLC27A1-201ENST00000252595 3594 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
USP28Q96RU2 GPAT3-208ENST00000611707 2633 ntAPPRIS P1 TSL 5 BASIC19.43■□□□□ 0.7
USP28Q96RU2 RALGDS-205ENST00000393160 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
USP28Q96RU2 KIAA1522-202ENST00000373480 5294 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
USP28Q96RU2 KIAA1522-203ENST00000373481 5293 ntAPPRIS ALT2 TSL 2 BASIC19.43■□□□□ 0.7
USP28Q96RU2 FOXP1-218ENST00000498215 2400 ntAPPRIS P3 TSL 2 BASIC19.43■□□□□ 0.7
USP28Q96RU2 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC19.43■□□□□ 0.7
USP28Q96RU2 KLC1-206ENST00000389744 3250 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
USP28Q96RU2 ZFYVE19-203ENST00000355341 2775 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
USP28Q96RU2 APOPT1-201ENST00000409074 2523 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 36.5 ms