Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 SUMO2P17-202ENST00000508743 738 ntTSL 3 BASIC16.9■□□□□ 0.3
VPS35Q96QK1 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC16.9■□□□□ 0.3
VPS35Q96QK1 LDLRAD2-203ENST00000543870 1180 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
VPS35Q96QK1 DUX4L17-201ENST00000557360 1267 ntBASIC16.9■□□□□ 0.3
VPS35Q96QK1 ARMC7-203ENST00000581078 1002 ntTSL 2 BASIC16.9■□□□□ 0.3
VPS35Q96QK1 TYROBP-205ENST00000585901 620 ntTSL 3 BASIC16.9■□□□□ 0.3
VPS35Q96QK1 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
VPS35Q96QK1 AC011474.1-201ENST00000582581 2582 ntTSL 2 BASIC16.9■□□□□ 0.3
VPS35Q96QK1 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
VPS35Q96QK1 ARID1A-205ENST00000457599 6268 ntAPPRIS ALT2 TSL 5 BASIC16.9■□□□□ 0.3
VPS35Q96QK1 AVPR1B-201ENST00000367126 2237 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
VPS35Q96QK1 SATB1-201ENST00000338745 7810 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
VPS35Q96QK1 KLHL33-201ENST00000344581 1863 ntTSL 5 BASIC16.9■□□□□ 0.3
VPS35Q96QK1 CNTNAP3-201ENST00000297668 5064 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
VPS35Q96QK1 CROCCP1-201ENST00000426910 5675 ntBASIC16.9■□□□□ 0.3
VPS35Q96QK1 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
VPS35Q96QK1 ZDHHC9-202ENST00000371064 2473 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
VPS35Q96QK1 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC16.9■□□□□ 0.3
VPS35Q96QK1 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC16.9■□□□□ 0.3
VPS35Q96QK1 PHKA1-205ENST00000541944 5944 ntAPPRIS ALT1 TSL 1 (best) BASIC16.9■□□□□ 0.3
VPS35Q96QK1 AC131160.1-201ENST00000639401 3058 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
VPS35Q96QK1 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
VPS35Q96QK1 UNC5D-202ENST00000404895 3252 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
VPS35Q96QK1 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC16.9■□□□□ 0.3
VPS35Q96QK1 SCNN1D-206ENST00000400928 2731 ntAPPRIS ALT2 TSL 5 BASIC16.9■□□□□ 0.3
VPS35Q96QK1 AC002310.6-201ENST00000624451 1377 ntBASIC16.89■□□□□ 0.3
VPS35Q96QK1 DMAP1-201ENST00000315913 1552 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.3
VPS35Q96QK1 AMMECR1-201ENST00000262844 5504 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.3
VPS35Q96QK1 RAB11FIP5-205ENST00000486777 6120 ntTSL 5 BASIC16.89■□□□□ 0.3
VPS35Q96QK1 DMPK-201ENST00000291270 2787 ntAPPRIS P3 TSL 5 BASIC16.89■□□□□ 0.3
VPS35Q96QK1 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.29
VPS35Q96QK1 ETNK2-203ENST00000367202 2434 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.29
VPS35Q96QK1 ODF2-204ENST00000372814 2249 ntTSL 2 BASIC16.89■□□□□ 0.29
VPS35Q96QK1 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
VPS35Q96QK1 CPEB2-AS1-201ENST00000500394 1630 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
VPS35Q96QK1 DNM1P34-201ENST00000567292 2276 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
VPS35Q96QK1 ALDH3B1-204ENST00000614849 2280 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
VPS35Q96QK1 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
VPS35Q96QK1 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC16.89■□□□□ 0.29
VPS35Q96QK1 GUK1-203ENST00000366718 1275 ntAPPRIS P3 TSL 3 BASIC16.89■□□□□ 0.29
VPS35Q96QK1 HYAL1-206ENST00000447605 666 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
VPS35Q96QK1 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC16.89■□□□□ 0.29
VPS35Q96QK1 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC16.89■□□□□ 0.29
VPS35Q96QK1 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC16.89■□□□□ 0.29
VPS35Q96QK1 JPH4-203ENST00000544177 1124 ntTSL 2 BASIC16.89■□□□□ 0.29
VPS35Q96QK1 OR7E47P-204ENST00000575924 449 ntBASIC16.89■□□□□ 0.29
VPS35Q96QK1 MIR4751-201ENST00000578027 74 ntBASIC16.89■□□□□ 0.29
VPS35Q96QK1 OAZ1-202ENST00000582888 969 ntAPPRIS ALT1 TSL 5 BASIC16.89■□□□□ 0.29
VPS35Q96QK1 PIN1-206ENST00000587625 878 ntTSL 2 BASIC16.89■□□□□ 0.29
VPS35Q96QK1 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC16.89■□□□□ 0.29
VPS35Q96QK1 FAM238C-204ENST00000640224 1268 ntTSL 5 BASIC16.89■□□□□ 0.29
VPS35Q96QK1 FAM135A-205ENST00000418814 6415 ntTSL 5 BASIC16.89■□□□□ 0.29
VPS35Q96QK1 ZNF385C-205ENST00000618554 2596 ntTSL 5 BASIC16.89■□□□□ 0.29
VPS35Q96QK1 AFMID-201ENST00000327898 1700 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
VPS35Q96QK1 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
VPS35Q96QK1 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC16.89■□□□□ 0.29
VPS35Q96QK1 KIF25-201ENST00000351261 1326 ntTSL 5 BASIC16.89■□□□□ 0.29
VPS35Q96QK1 ULBP2-201ENST00000367351 1349 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
VPS35Q96QK1 PCDHA6-202ENST00000527624 2231 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
VPS35Q96QK1 DCLK2-204ENST00000506325 2298 ntAPPRIS ALT2 TSL 5 BASIC16.89■□□□□ 0.29
VPS35Q96QK1 GALNT17-201ENST00000333538 3884 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
VPS35Q96QK1 TPM1-205ENST00000357980 1800 ntTSL 2 BASIC16.89■□□□□ 0.29
VPS35Q96QK1 CDH24-204ENST00000487137 3438 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.29
VPS35Q96QK1 ALDH3B1-208ENST00000617288 2078 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
VPS35Q96QK1 ZDHHC20-209ENST00000542645 5315 ntAPPRIS ALT2 TSL 2 BASIC16.89■□□□□ 0.29
VPS35Q96QK1 PRDM5-203ENST00000428209 2338 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
VPS35Q96QK1 LSP1-217ENST00000612798 1881 ntAPPRIS ALT2 TSL 2 BASIC16.88■□□□□ 0.29
VPS35Q96QK1 PBK-201ENST00000301905 2118 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
VPS35Q96QK1 ZSCAN25-201ENST00000262941 1652 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
VPS35Q96QK1 SMARCA4-215ENST00000590574 5282 ntAPPRIS ALT1 TSL 5 BASIC16.88■□□□□ 0.29
VPS35Q96QK1 ORAI2-205ENST00000478730 5531 ntAPPRIS P1 TSL 2 BASIC16.88■□□□□ 0.29
VPS35Q96QK1 PRORSD1P-202ENST00000563365 2154 ntBASIC16.88■□□□□ 0.29
VPS35Q96QK1 AC062028.1-203ENST00000447433 1472 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
VPS35Q96QK1 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC16.88■□□□□ 0.29
VPS35Q96QK1 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC16.88■□□□□ 0.29
VPS35Q96QK1 ZAR1L-201ENST00000345108 1103 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
VPS35Q96QK1 HUS1B-201ENST00000380907 1025 ntAPPRIS P1 BASIC16.88■□□□□ 0.29
VPS35Q96QK1 OTOS-202ENST00000391989 645 ntAPPRIS P1 TSL 3 BASIC16.88■□□□□ 0.29
VPS35Q96QK1 CRYGEP-201ENST00000412192 528 ntBASIC16.88■□□□□ 0.29
VPS35Q96QK1 CRCP-205ENST00000431089 942 ntTSL 2 BASIC16.88■□□□□ 0.29
VPS35Q96QK1 ARPC4-203ENST00000433034 926 ntTSL 3 BASIC16.88■□□□□ 0.29
VPS35Q96QK1 VN2R19P-201ENST00000442399 1052 ntBASIC16.88■□□□□ 0.29
VPS35Q96QK1 AL591424.1-201ENST00000442569 1213 ntBASIC16.88■□□□□ 0.29
VPS35Q96QK1 MAGI2-AS3-208ENST00000446159 670 ntTSL 3 BASIC16.88■□□□□ 0.29
VPS35Q96QK1 MKNK2-212ENST00000591588 631 ntTSL 2 BASIC16.88■□□□□ 0.29
VPS35Q96QK1 CAND2-206ENST00000626378 333 ntTSL 5 BASIC16.88■□□□□ 0.29
VPS35Q96QK1 JMJD4-201ENST00000366758 2595 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
VPS35Q96QK1 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
VPS35Q96QK1 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC16.88■□□□□ 0.29
VPS35Q96QK1 SRF-201ENST00000265354 4202 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
VPS35Q96QK1 AC129492.6-201ENST00000611383 1305 ntBASIC16.88■□□□□ 0.29
VPS35Q96QK1 RIF1-204ENST00000430328 7992 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
VPS35Q96QK1 C8orf33-201ENST00000331434 2677 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
VPS35Q96QK1 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC16.88■□□□□ 0.29
VPS35Q96QK1 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
VPS35Q96QK1 EFCAB14-201ENST00000371933 5767 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
VPS35Q96QK1 AL590627.1-201ENST00000626603 1910 ntTSL 2 BASIC16.88■□□□□ 0.29
VPS35Q96QK1 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
VPS35Q96QK1 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
VPS35Q96QK1 TRAF2-201ENST00000247668 2264 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 45.8 ms