Protein–RNA interactions for Protein: Q96M19

LINC00477, Putative transmembrane protein encoded by LINC00477, humanhuman

Predictions only

Length 166 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00477Q96M19 CRELD2-204ENST00000407217 1230 ntAPPRIS ALT2 TSL 1 (best) BASIC12.79□□□□□ -0.36
LINC00477Q96M19 AC008105.2-201ENST00000420431 579 ntTSL 4 BASIC12.79□□□□□ -0.36
LINC00477Q96M19 AL020989.1-201ENST00000422979 469 ntBASIC12.79□□□□□ -0.36
LINC00477Q96M19 HDAC11-AS1-201ENST00000424112 515 ntTSL 2 BASIC12.79□□□□□ -0.36
LINC00477Q96M19 ACTG1P4-201ENST00000425123 1122 ntBASIC12.79□□□□□ -0.36
LINC00477Q96M19 NDUFA13-201ENST00000428459 576 ntTSL 2 BASIC12.79□□□□□ -0.36
LINC00477Q96M19 AL645941.2-201ENST00000429234 612 ntAPPRIS P1 TSL 2 BASIC12.79□□□□□ -0.36
LINC00477Q96M19 AC113382.1-201ENST00000500267 1253 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
LINC00477Q96M19 AP006284.1-202ENST00000527113 527 ntTSL 4 BASIC12.79□□□□□ -0.36
LINC00477Q96M19 AC106782.2-201ENST00000563252 992 ntTSL 3 BASIC12.79□□□□□ -0.36
LINC00477Q96M19 KCNE1B-204ENST00000623803 811 ntAPPRIS P2 TSL 1 (best) BASIC12.79□□□□□ -0.36
LINC00477Q96M19 CA12-203ENST00000422263 2556 ntTSL 2 BASIC12.79□□□□□ -0.36
LINC00477Q96M19 BCL11A-201ENST00000335712 5942 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
LINC00477Q96M19 FAM57B-202ENST00000380495 2313 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
LINC00477Q96M19 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC12.79□□□□□ -0.36
LINC00477Q96M19 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
LINC00477Q96M19 CELF6-204ENST00000543764 1676 ntTSL 2 BASIC12.79□□□□□ -0.36
LINC00477Q96M19 CLIC5-202ENST00000339561 2390 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
LINC00477Q96M19 PCDHB19P-201ENST00000570871 2371 ntBASIC12.79□□□□□ -0.36
LINC00477Q96M19 SPRYD7-202ENST00000378195 3086 ntTSL 2 BASIC12.79□□□□□ -0.36
LINC00477Q96M19 FBXO28-201ENST00000366862 5451 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
LINC00477Q96M19 ABHD14B-204ENST00000461108 1397 ntTSL 2 BASIC12.79□□□□□ -0.36
LINC00477Q96M19 AC233702.3-201ENST00000578656 1387 ntBASIC12.79□□□□□ -0.36
LINC00477Q96M19 CHGA-201ENST00000216492 2063 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
LINC00477Q96M19 DLGAP4-205ENST00000401952 4881 ntAPPRIS P4 TSL 5 BASIC12.79□□□□□ -0.36
LINC00477Q96M19 ELMSAN1-201ENST00000286523 8091 ntAPPRIS P2 TSL 1 (best) BASIC12.79□□□□□ -0.36
LINC00477Q96M19 CCDC142-201ENST00000290418 2835 ntAPPRIS P2 TSL 2 BASIC12.79□□□□□ -0.36
LINC00477Q96M19 SLFNL1-205ENST00000439569 2117 ntAPPRIS P3 TSL 2 BASIC12.79□□□□□ -0.36
LINC00477Q96M19 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC12.79□□□□□ -0.36
LINC00477Q96M19 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
LINC00477Q96M19 PPP1R16B-202ENST00000373331 6106 ntTSL 5 BASIC12.79□□□□□ -0.36
LINC00477Q96M19 ARID4B-202ENST00000349213 5811 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
LINC00477Q96M19 ANKRD26-201ENST00000376087 6591 ntAPPRIS P2 TSL 5 BASIC12.78□□□□□ -0.36
LINC00477Q96M19 INO80E-201ENST00000304516 1489 ntTSL 2 BASIC12.78□□□□□ -0.36
LINC00477Q96M19 KCNQ2-236ENST00000637193 2983 ntTSL 5 BASIC12.78□□□□□ -0.36
LINC00477Q96M19 PRKAR2B-201ENST00000265717 3745 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
LINC00477Q96M19 CPD-201ENST00000225719 9394 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
LINC00477Q96M19 ETFA-203ENST00000557943 2287 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
LINC00477Q96M19 TNXB-208ENST00000611016 6083 ntTSL 5 BASIC12.78□□□□□ -0.36
LINC00477Q96M19 HPCAL1-206ENST00000613496 1547 ntAPPRIS P1 TSL 3 BASIC12.78□□□□□ -0.36
LINC00477Q96M19 PRR18-201ENST00000322583 3084 ntAPPRIS P2 BASIC12.78□□□□□ -0.36
LINC00477Q96M19 STAT5A-207ENST00000546010 3086 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
LINC00477Q96M19 INTS4P1-201ENST00000438455 1935 ntBASIC12.78□□□□□ -0.36
LINC00477Q96M19 CRY2-211ENST00000616080 1936 ntAPPRIS ALT2 TSL 1 (best) BASIC12.78□□□□□ -0.36
LINC00477Q96M19 AIFM3-203ENST00000405089 2333 ntAPPRIS ALT1 TSL 2 BASIC12.78□□□□□ -0.36
LINC00477Q96M19 DCLK2-201ENST00000296550 4265 ntAPPRIS P3 TSL 1 (best) BASIC12.78□□□□□ -0.36
LINC00477Q96M19 NRXN2-202ENST00000301894 3535 ntTSL 5 BASIC12.78□□□□□ -0.36
LINC00477Q96M19 SRSF12-201ENST00000452027 3599 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
LINC00477Q96M19 MOV10L1-201ENST00000262794 3960 ntAPPRIS P3 TSL 1 (best) BASIC12.78□□□□□ -0.36
LINC00477Q96M19 RNF216P1-203ENST00000404404 2427 ntBASIC12.78□□□□□ -0.36
LINC00477Q96M19 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC12.78□□□□□ -0.36
LINC00477Q96M19 DDX19B-204ENST00000451014 1608 ntTSL 2 BASIC12.78□□□□□ -0.36
LINC00477Q96M19 SEPT6-209ENST00000489216 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC12.78□□□□□ -0.36
LINC00477Q96M19 SLC35F3-202ENST00000366618 2891 ntAPPRIS P3 TSL 2 BASIC12.78□□□□□ -0.36
LINC00477Q96M19 KRT84-201ENST00000257951 2092 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
LINC00477Q96M19 ADAM22-204ENST00000398204 9334 ntAPPRIS ALT2 TSL 1 (best) BASIC12.78□□□□□ -0.36
LINC00477Q96M19 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
LINC00477Q96M19 AL031133.1-201ENST00000406807 723 ntBASIC12.78□□□□□ -0.36
LINC00477Q96M19 POM121L3P-201ENST00000419331 1163 ntBASIC12.78□□□□□ -0.36
LINC00477Q96M19 AL391650.1-205ENST00000433939 579 ntAPPRIS P1 TSL 3 BASIC12.78□□□□□ -0.36
LINC00477Q96M19 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC12.78□□□□□ -0.36
LINC00477Q96M19 ABHD18-203ENST00000444616 2129 ntAPPRIS P1 TSL 5 BASIC12.78□□□□□ -0.36
LINC00477Q96M19 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC12.78□□□□□ -0.36
LINC00477Q96M19 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC12.78□□□□□ -0.36
LINC00477Q96M19 EEF1D-243ENST00000532400 419 ntTSL 3 BASIC12.78□□□□□ -0.36
LINC00477Q96M19 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC12.78□□□□□ -0.36
LINC00477Q96M19 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
LINC00477Q96M19 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC12.78□□□□□ -0.36
LINC00477Q96M19 IGFLR1-209ENST00000592537 1195 ntAPPRIS P2 TSL 1 (best) BASIC12.78□□□□□ -0.36
LINC00477Q96M19 H2BFWT-202ENST00000611083 528 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
LINC00477Q96M19 HNF1B-206ENST00000620125 1103 ntTSL 5 BASIC12.78□□□□□ -0.36
LINC00477Q96M19 DCAF12L2-201ENST00000360028 2599 ntAPPRIS P1 BASIC12.78□□□□□ -0.36
LINC00477Q96M19 KLC2-203ENST00000394066 2591 ntTSL 2 BASIC12.78□□□□□ -0.36
LINC00477Q96M19 AC063926.3-201ENST00000624734 5658 ntBASIC12.78□□□□□ -0.36
LINC00477Q96M19 JPH4-202ENST00000397118 4386 ntAPPRIS P2 TSL 1 (best) BASIC12.78□□□□□ -0.36
LINC00477Q96M19 TMEM138-201ENST00000278826 1848 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
LINC00477Q96M19 DGKE-204ENST00000572810 1843 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
LINC00477Q96M19 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
LINC00477Q96M19 AL021920.2-201ENST00000624828 1351 ntBASIC12.78□□□□□ -0.36
LINC00477Q96M19 NUP50-202ENST00000396096 1895 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
LINC00477Q96M19 PITPNM2-208ENST00000542749 6660 ntAPPRIS P3 TSL 1 (best) BASIC12.78□□□□□ -0.36
LINC00477Q96M19 AL162311.3-201ENST00000555918 2867 ntTSL 2 BASIC12.78□□□□□ -0.36
LINC00477Q96M19 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC12.78□□□□□ -0.36
LINC00477Q96M19 SYT1-201ENST00000261205 4808 ntAPPRIS P3 TSL 1 (best) BASIC12.78□□□□□ -0.36
LINC00477Q96M19 ZNF385A-203ENST00000394313 2430 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
LINC00477Q96M19 LZTS1-201ENST00000265801 5459 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
LINC00477Q96M19 CCNY-202ENST00000339497 4630 ntTSL 1 (best) BASIC12.77□□□□□ -0.36
LINC00477Q96M19 PMPCAP1-201ENST00000508114 1576 ntBASIC12.77□□□□□ -0.36
LINC00477Q96M19 KIF3A-202ENST00000378746 6325 ntAPPRIS P3 TSL 5 BASIC12.77□□□□□ -0.36
LINC00477Q96M19 TNRC18P3-201ENST00000441896 2691 ntBASIC12.77□□□□□ -0.36
LINC00477Q96M19 MIDN-201ENST00000300952 3790 ntAPPRIS P2 TSL 5 BASIC12.77□□□□□ -0.36
LINC00477Q96M19 BSG-203ENST00000353555 1616 ntTSL 1 (best) BASIC12.77□□□□□ -0.36
LINC00477Q96M19 SEC23A-203ENST00000545328 2734 ntTSL 2 BASIC12.77□□□□□ -0.36
LINC00477Q96M19 TBC1D28-201ENST00000345096 2789 ntAPPRIS P1 TSL 2 BASIC12.77□□□□□ -0.36
LINC00477Q96M19 GOLGA2-213ENST00000610329 2212 ntTSL 2 BASIC12.77□□□□□ -0.36
LINC00477Q96M19 KCTD14-201ENST00000353172 1691 ntAPPRIS P3 TSL 1 (best) BASIC12.77□□□□□ -0.36
LINC00477Q96M19 RDX-201ENST00000343115 4491 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
LINC00477Q96M19 TRIM7-204ENST00000393319 2320 ntTSL 1 (best) BASIC12.77□□□□□ -0.36
LINC00477Q96M19 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
LINC00477Q96M19 PDPK2P-201ENST00000382326 2387 ntTSL 1 (best) BASIC12.77□□□□□ -0.36
Retrieved 100 of 98,524 protein–RNA pairs in 66 ms