Protein–RNA interactions for Protein: Q8WYN0

ATG4A, Cysteine protease ATG4A, humanhuman

Predictions only

Length 398 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4AQ8WYN0 AC104809.1-201ENST00000425110 2345 ntTSL 2 BASIC17.69■□□□□ 0.42
ATG4AQ8WYN0 NFASC-205ENST00000403080 2462 ntTSL 2 BASIC17.69■□□□□ 0.42
ATG4AQ8WYN0 SLC6A2-209ENST00000568943 2471 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
ATG4AQ8WYN0 AC110813.1-201ENST00000507934 2209 ntTSL 2 BASIC17.68■□□□□ 0.42
ATG4AQ8WYN0 RASAL3-201ENST00000343625 3293 ntAPPRIS P2 TSL 2 BASIC17.68■□□□□ 0.42
ATG4AQ8WYN0 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
ATG4AQ8WYN0 JADE3-204ENST00000614628 4934 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
ATG4AQ8WYN0 RNF31-201ENST00000324103 3627 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
ATG4AQ8WYN0 TBX4-201ENST00000240335 2470 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
ATG4AQ8WYN0 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
ATG4AQ8WYN0 PABPC4-203ENST00000372858 2753 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
ATG4AQ8WYN0 PHTF1-205ENST00000393357 3244 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
ATG4AQ8WYN0 SPDYE21P-201ENST00000413323 827 ntBASIC17.68■□□□□ 0.42
ATG4AQ8WYN0 AL020989.1-201ENST00000422979 469 ntBASIC17.68■□□□□ 0.42
ATG4AQ8WYN0 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC17.68■□□□□ 0.42
ATG4AQ8WYN0 ICAM2-203ENST00000449662 1221 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
ATG4AQ8WYN0 AC097372.2-201ENST00000510996 732 ntTSL 3 BASIC17.68■□□□□ 0.42
ATG4AQ8WYN0 CSRP1-214ENST00000531916 890 ntTSL 5 BASIC17.68■□□□□ 0.42
ATG4AQ8WYN0 PUS1-208ENST00000542167 2151 ntTSL 5 BASIC17.68■□□□□ 0.42
ATG4AQ8WYN0 TMC3-AS1-203ENST00000559781 2195 ntTSL 3 BASIC17.68■□□□□ 0.42
ATG4AQ8WYN0 IL11-204ENST00000590625 1028 ntTSL 2 BASIC17.68■□□□□ 0.42
ATG4AQ8WYN0 TMIGD2-202ENST00000595645 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
ATG4AQ8WYN0 KISS1R-203ENST00000606939 964 ntTSL 5 BASIC17.68■□□□□ 0.42
ATG4AQ8WYN0 AC005632.4-201ENST00000613759 431 ntTSL 3 BASIC17.68■□□□□ 0.42
ATG4AQ8WYN0 BEAN1-211ENST00000622872 1171 ntAPPRIS P2 TSL 5 BASIC17.68■□□□□ 0.42
ATG4AQ8WYN0 SMARCA4-203ENST00000429416 5691 ntTSL 2 BASIC17.68■□□□□ 0.42
ATG4AQ8WYN0 MICALL2-201ENST00000297508 3121 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
ATG4AQ8WYN0 SMTNL2-201ENST00000338859 1919 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
ATG4AQ8WYN0 TRPC3-202ENST00000379645 3548 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
ATG4AQ8WYN0 UBQLN1-201ENST00000257468 2299 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
ATG4AQ8WYN0 MRFAP1-205ENST00000617365 2112 ntTSL 5 BASIC17.68■□□□□ 0.42
ATG4AQ8WYN0 FUK-207ENST00000571514 3054 ntTSL 2 BASIC17.68■□□□□ 0.42
ATG4AQ8WYN0 ARID1B-202ENST00000346085 10194 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
ATG4AQ8WYN0 TACC1-202ENST00000317827 7802 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
ATG4AQ8WYN0 AGK-211ENST00000629555 2765 ntTSL 5 BASIC17.68■□□□□ 0.42
ATG4AQ8WYN0 PIGT-207ENST00000543458 2037 ntTSL 2 BASIC17.67■□□□□ 0.42
ATG4AQ8WYN0 TSKU-205ENST00000612930 2666 ntAPPRIS P1 TSL 4 BASIC17.67■□□□□ 0.42
ATG4AQ8WYN0 EIF4A3-201ENST00000269349 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
ATG4AQ8WYN0 CBWD1-202ENST00000356521 1706 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
ATG4AQ8WYN0 CLDN6-202ENST00000396925 1739 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
ATG4AQ8WYN0 AL132857.2-201ENST00000634305 1737 ntTSL 5 BASIC17.67■□□□□ 0.42
ATG4AQ8WYN0 ALOX12P2-203ENST00000570921 1945 ntBASIC17.67■□□□□ 0.42
ATG4AQ8WYN0 NLGN2-201ENST00000302926 4642 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
ATG4AQ8WYN0 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
ATG4AQ8WYN0 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
ATG4AQ8WYN0 NAT6-202ENST00000417393 1163 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
ATG4AQ8WYN0 SIGLEC30P-201ENST00000455569 941 ntBASIC17.67■□□□□ 0.42
ATG4AQ8WYN0 POLR2M-203ENST00000464277 910 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
ATG4AQ8WYN0 AP000867.3-201ENST00000524675 377 ntBASIC17.67■□□□□ 0.42
ATG4AQ8WYN0 SSSCA1-206ENST00000531405 879 ntTSL 2 BASIC17.67■□□□□ 0.42
ATG4AQ8WYN0 ERCC5-207ENST00000535557 1125 ntTSL 5 BASIC17.67■□□□□ 0.42
ATG4AQ8WYN0 MUC1-224ENST00000611577 1023 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
ATG4AQ8WYN0 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
ATG4AQ8WYN0 TNKS-211ENST00000520408 1964 ntTSL 2 BASIC17.67■□□□□ 0.42
ATG4AQ8WYN0 AC097637.2-201ENST00000624096 1997 ntBASIC17.67■□□□□ 0.42
ATG4AQ8WYN0 DNAJC28-203ENST00000402202 1480 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
ATG4AQ8WYN0 TSSK2-201ENST00000399635 1816 ntAPPRIS P1 BASIC17.67■□□□□ 0.42
ATG4AQ8WYN0 PELI3-209ENST00000618547 2508 ntTSL 2 BASIC17.67■□□□□ 0.42
ATG4AQ8WYN0 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
ATG4AQ8WYN0 ITM2C-201ENST00000326407 1888 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
ATG4AQ8WYN0 ASH1L-207ENST00000548830 1862 ntTSL 5 BASIC17.67■□□□□ 0.42
ATG4AQ8WYN0 F7-201ENST00000346342 2409 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
ATG4AQ8WYN0 TRIM39-201ENST00000376656 3338 ntAPPRIS P4 TSL 2 BASIC17.67■□□□□ 0.42
ATG4AQ8WYN0 SEMA5B-202ENST00000357599 4792 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
ATG4AQ8WYN0 PPP1R3E-201ENST00000452015 4773 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
ATG4AQ8WYN0 ATG3-201ENST00000283290 1570 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
ATG4AQ8WYN0 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
ATG4AQ8WYN0 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
ATG4AQ8WYN0 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC17.66■□□□□ 0.42
ATG4AQ8WYN0 SCAP-201ENST00000265565 4394 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
ATG4AQ8WYN0 CCDC71L-202ENST00000523505 4232 ntAPPRIS P2 BASIC17.66■□□□□ 0.42
ATG4AQ8WYN0 PLIN1-202ENST00000430628 2900 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
ATG4AQ8WYN0 SLC25A45-201ENST00000294187 2196 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
ATG4AQ8WYN0 COL8A2-202ENST00000397799 4670 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
ATG4AQ8WYN0 CCNA2-201ENST00000274026 2797 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
ATG4AQ8WYN0 SIN3B-206ENST00000595541 2767 ntTSL 2 BASIC17.66■□□□□ 0.42
ATG4AQ8WYN0 SCP2-204ENST00000407246 2239 ntTSL 2 BASIC17.66■□□□□ 0.42
ATG4AQ8WYN0 TMC7-201ENST00000304381 3640 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
ATG4AQ8WYN0 NPFFR2-202ENST00000344413 1234 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
ATG4AQ8WYN0 BOLA1-201ENST00000369150 811 ntAPPRIS P1 TSL 3 BASIC17.66■□□□□ 0.42
ATG4AQ8WYN0 ROMO1-203ENST00000374077 422 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
ATG4AQ8WYN0 ACTG1P4-201ENST00000425123 1122 ntBASIC17.66■□□□□ 0.42
ATG4AQ8WYN0 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC17.66■□□□□ 0.42
ATG4AQ8WYN0 HNRNPRP1-201ENST00000453465 1695 ntBASIC17.66■□□□□ 0.42
ATG4AQ8WYN0 DCAF17-211ENST00000539783 5623 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
ATG4AQ8WYN0 DIMT1-201ENST00000199320 2859 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
ATG4AQ8WYN0 PEX6-202ENST00000304611 3478 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
ATG4AQ8WYN0 CDS1-201ENST00000295887 4461 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
ATG4AQ8WYN0 HIP1R-201ENST00000253083 4539 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
ATG4AQ8WYN0 PLPPR5-202ENST00000370188 4139 ntAPPRIS ALT1 TSL 1 (best) BASIC17.66■□□□□ 0.42
ATG4AQ8WYN0 PTGES3-201ENST00000262033 1920 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
ATG4AQ8WYN0 DACH1-203ENST00000619232 2986 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
ATG4AQ8WYN0 PLK2-215ENST00000617412 2792 ntTSL 5 BASIC17.66■□□□□ 0.42
ATG4AQ8WYN0 AC046158.3-201ENST00000624947 2558 ntBASIC17.66■□□□□ 0.42
ATG4AQ8WYN0 CPXM1-201ENST00000380605 2391 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
ATG4AQ8WYN0 ELF2-207ENST00000510408 1965 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
ATG4AQ8WYN0 TLE2-202ENST00000426948 2406 ntTSL 5 BASIC17.66■□□□□ 0.42
ATG4AQ8WYN0 CDC42EP4-201ENST00000335793 3272 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
ATG4AQ8WYN0 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
ATG4AQ8WYN0 ACSF3-204ENST00000406948 2247 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 41.3 ms