Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 LLGL2-209ENST00000578363 1393 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
SMC1BQ8NDV3 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
SMC1BQ8NDV3 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
SMC1BQ8NDV3 AKR7L-202ENST00000429712 1313 ntAPPRIS P5 TSL 1 (best) BASIC20.03■□□□□ 0.8
SMC1BQ8NDV3 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
SMC1BQ8NDV3 SLCO4A1-AS1-202ENST00000433126 1420 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
SMC1BQ8NDV3 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC20.03■□□□□ 0.8
SMC1BQ8NDV3 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
SMC1BQ8NDV3 ZBTB4-201ENST00000311403 5956 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
SMC1BQ8NDV3 RAB1A-204ENST00000409892 2254 ntTSL 2 BASIC20.03■□□□□ 0.8
SMC1BQ8NDV3 STX1A-203ENST00000395155 783 ntTSL 2 BASIC20.03■□□□□ 0.8
SMC1BQ8NDV3 PP14571-201ENST00000404327 934 ntTSL 2 BASIC20.03■□□□□ 0.8
SMC1BQ8NDV3 AL161785.3-201ENST00000435157 395 ntTSL 3 BASIC20.03■□□□□ 0.8
SMC1BQ8NDV3 AL355994.2-201ENST00000447882 704 ntBASIC20.03■□□□□ 0.8
SMC1BQ8NDV3 AL133523.1-201ENST00000554537 331 ntTSL 3 BASIC20.03■□□□□ 0.8
SMC1BQ8NDV3 AC000032.1-201ENST00000562538 491 ntTSL 2 BASIC20.03■□□□□ 0.8
SMC1BQ8NDV3 FLT3LG-205ENST00000596435 1034 ntTSL 5 BASIC20.03■□□□□ 0.8
SMC1BQ8NDV3 AC244517.4-201ENST00000624549 580 ntTSL 4 BASIC20.03■□□□□ 0.8
SMC1BQ8NDV3 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC20.03■□□□□ 0.8
SMC1BQ8NDV3 WDR4-201ENST00000330317 1471 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
SMC1BQ8NDV3 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
SMC1BQ8NDV3 SLC34A3-201ENST00000361134 2124 ntAPPRIS P1 TSL 2 BASIC20.03■□□□□ 0.8
SMC1BQ8NDV3 VEZF1-202ENST00000581208 2321 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
SMC1BQ8NDV3 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
SMC1BQ8NDV3 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC20.03■□□□□ 0.8
SMC1BQ8NDV3 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
SMC1BQ8NDV3 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
SMC1BQ8NDV3 TUBB1P2-201ENST00000422712 1306 ntBASIC20.02■□□□□ 0.8
SMC1BQ8NDV3 TUBB1P1-201ENST00000503144 1300 ntBASIC20.02■□□□□ 0.8
SMC1BQ8NDV3 FPGS-203ENST00000373247 2279 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
SMC1BQ8NDV3 AC046185.3-201ENST00000623228 1824 ntBASIC20.02■□□□□ 0.8
SMC1BQ8NDV3 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
SMC1BQ8NDV3 LINC01806-201ENST00000436506 765 ntTSL 2 BASIC20.02■□□□□ 0.8
SMC1BQ8NDV3 AC006001.2-201ENST00000448096 393 ntTSL 3 BASIC20.02■□□□□ 0.8
SMC1BQ8NDV3 CNOT8-214ENST00000520671 923 ntTSL 2 BASIC20.02■□□□□ 0.8
SMC1BQ8NDV3 TMEM170A-203ENST00000566980 547 ntTSL 5 BASIC20.02■□□□□ 0.8
SMC1BQ8NDV3 C19orf53-206ENST00000593274 491 ntTSL 2 BASIC20.02■□□□□ 0.8
SMC1BQ8NDV3 ACP5-203ENST00000433365 1397 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
SMC1BQ8NDV3 OTUB1-206ENST00000535715 1391 ntTSL 5 BASIC20.02■□□□□ 0.8
SMC1BQ8NDV3 EIF5A-206ENST00000571955 1366 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.8
SMC1BQ8NDV3 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC20.02■□□□□ 0.8
SMC1BQ8NDV3 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC20.02■□□□□ 0.8
SMC1BQ8NDV3 ARMC6-202ENST00000392335 2383 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
SMC1BQ8NDV3 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
SMC1BQ8NDV3 DPY19L3-206ENST00000587077 2456 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
SMC1BQ8NDV3 CACNA1A-214ENST00000614285 8410 ntAPPRIS ALT2 TSL 5 BASIC20.02■□□□□ 0.79
SMC1BQ8NDV3 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
SMC1BQ8NDV3 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC20.02■□□□□ 0.79
SMC1BQ8NDV3 PWP1-202ENST00000541166 1722 ntTSL 2 BASIC20.02■□□□□ 0.79
SMC1BQ8NDV3 PLEKHG5-212ENST00000537245 4794 ntAPPRIS ALT2 TSL 2 BASIC20.02■□□□□ 0.79
SMC1BQ8NDV3 POMK-203ENST00000614426 1527 ntAPPRIS P1 TSL 4 BASIC20.02■□□□□ 0.79
SMC1BQ8NDV3 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC20.01■□□□□ 0.79
SMC1BQ8NDV3 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC20.01■□□□□ 0.79
SMC1BQ8NDV3 FADS1-204ENST00000433932 1690 ntTSL 2 BASIC20.01■□□□□ 0.79
SMC1BQ8NDV3 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC20.01■□□□□ 0.79
SMC1BQ8NDV3 FHAD1-205ENST00000375997 1459 ntTSL 3 BASIC20.01■□□□□ 0.79
SMC1BQ8NDV3 PIANP-201ENST00000320591 2323 ntAPPRIS P3 TSL 1 (best) BASIC20.01■□□□□ 0.79
SMC1BQ8NDV3 DDT-201ENST00000350608 671 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
SMC1BQ8NDV3 TEX26-AS1-201ENST00000411835 1203 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
SMC1BQ8NDV3 AL606534.2-205ENST00000437691 346 ntTSL 5 BASIC20.01■□□□□ 0.79
SMC1BQ8NDV3 AL513217.1-202ENST00000458139 600 ntTSL 3 BASIC20.01■□□□□ 0.79
SMC1BQ8NDV3 ROPN1B-210ENST00000514116 1088 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
SMC1BQ8NDV3 AGER-214ENST00000538695 487 ntTSL 2 BASIC20.01■□□□□ 0.79
SMC1BQ8NDV3 AC013451.1-201ENST00000554552 518 ntTSL 4 BASIC20.01■□□□□ 0.79
SMC1BQ8NDV3 Z97055.2-201ENST00000563715 859 ntTSL 3 BASIC20.01■□□□□ 0.79
SMC1BQ8NDV3 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC20.01■□□□□ 0.79
SMC1BQ8NDV3 AC022167.4-201ENST00000570290 498 ntTSL 3 BASIC20.01■□□□□ 0.79
SMC1BQ8NDV3 RN7SL828P-201ENST00000607615 303 ntBASIC20.01■□□□□ 0.79
SMC1BQ8NDV3 AGER-215ENST00000620802 737 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
SMC1BQ8NDV3 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
SMC1BQ8NDV3 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC20.01■□□□□ 0.79
SMC1BQ8NDV3 KIAA1549-201ENST00000422774 6283 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
SMC1BQ8NDV3 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC20.01■□□□□ 0.79
SMC1BQ8NDV3 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC20.01■□□□□ 0.79
SMC1BQ8NDV3 NPM2-203ENST00000397940 1874 ntAPPRIS P2 TSL 2 BASIC20.01■□□□□ 0.79
SMC1BQ8NDV3 TBC1D3I-202ENST00000618620 1900 ntTSL 1 (best) BASIC20■□□□□ 0.79
SMC1BQ8NDV3 SPSB2-203ENST00000519357 1496 ntTSL 2 BASIC20■□□□□ 0.79
SMC1BQ8NDV3 AL353732.1-201ENST00000569618 1459 ntBASIC20■□□□□ 0.79
SMC1BQ8NDV3 ADRA1A-201ENST00000276393 2281 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
SMC1BQ8NDV3 BCL2L12-203ENST00000441864 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
SMC1BQ8NDV3 ITGA6-201ENST00000264107 5618 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
SMC1BQ8NDV3 TNNI1-203ENST00000367312 1100 ntAPPRIS P2 TSL 5 BASIC20■□□□□ 0.79
SMC1BQ8NDV3 GBGT1-202ENST00000372038 847 ntTSL 3 BASIC20■□□□□ 0.79
SMC1BQ8NDV3 HLA-H-201ENST00000383620 1096 ntBASIC20■□□□□ 0.79
SMC1BQ8NDV3 NDUFA3-204ENST00000391764 267 ntTSL 3 BASIC20■□□□□ 0.79
SMC1BQ8NDV3 KRT43P-201ENST00000434019 910 ntBASIC20■□□□□ 0.79
SMC1BQ8NDV3 IP6K1-203ENST00000460540 1260 ntTSL 2 BASIC20■□□□□ 0.79
SMC1BQ8NDV3 C8orf46-205ENST00000480005 865 ntTSL 2 BASIC20■□□□□ 0.79
SMC1BQ8NDV3 CRYGN-205ENST00000491928 698 ntTSL 1 (best) BASIC20■□□□□ 0.79
SMC1BQ8NDV3 RNA5SP423-201ENST00000517127 109 ntBASIC20■□□□□ 0.79
SMC1BQ8NDV3 RCN1-210ENST00000532942 1191 ntAPPRIS ALT2 TSL 2 BASIC20■□□□□ 0.79
SMC1BQ8NDV3 ACYP1-206ENST00000555694 565 ntAPPRIS P1 TSL 3 BASIC20■□□□□ 0.79
SMC1BQ8NDV3 LINC00473-203ENST00000581850 929 ntTSL 3 BASIC20■□□□□ 0.79
SMC1BQ8NDV3 AP001033.1-201ENST00000584509 466 ntTSL 3 BASIC20■□□□□ 0.79
SMC1BQ8NDV3 CTBP2P3-201ENST00000585629 1255 ntBASIC20■□□□□ 0.79
SMC1BQ8NDV3 AC015936.2-201ENST00000593177 259 ntBASIC20■□□□□ 0.79
SMC1BQ8NDV3 CDC42EP4-209ENST00000630622 240 ntTSL 5 BASIC20■□□□□ 0.79
SMC1BQ8NDV3 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC20■□□□□ 0.79
SMC1BQ8NDV3 PSMA1-209ENST00000530457 1527 ntTSL 5 BASIC20■□□□□ 0.79
SMC1BQ8NDV3 GAS6-201ENST00000327773 2490 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 31.1 ms