Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 FOLR3-201ENST00000442948 805 ntTSL 5 BASIC17.04■□□□□ 0.32
HDDC3Q8N4P3 SLC22A18-206ENST00000449793 1225 ntTSL 5 BASIC17.04■□□□□ 0.32
HDDC3Q8N4P3 TMEM161B-AS1-202ENST00000501715 1101 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
HDDC3Q8N4P3 SEC24B-AS1-203ENST00000505895 800 ntTSL 4 BASIC17.04■□□□□ 0.32
HDDC3Q8N4P3 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
HDDC3Q8N4P3 IL32-223ENST00000534507 1112 ntAPPRIS ALT2 TSL 2 BASIC17.04■□□□□ 0.32
HDDC3Q8N4P3 AC069262.1-201ENST00000539058 672 ntBASIC17.04■□□□□ 0.32
HDDC3Q8N4P3 IL32-227ENST00000548652 812 ntAPPRIS ALT2 TSL 3 BASIC17.04■□□□□ 0.32
HDDC3Q8N4P3 IL32-233ENST00000552664 731 ntAPPRIS P4 TSL 3 BASIC17.04■□□□□ 0.32
HDDC3Q8N4P3 AC004771.3-201ENST00000574260 551 ntTSL 4 BASIC17.04■□□□□ 0.32
HDDC3Q8N4P3 RAB3D-202ENST00000589655 924 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
HDDC3Q8N4P3 AC010503.2-201ENST00000599292 296 ntTSL 3 BASIC17.04■□□□□ 0.32
HDDC3Q8N4P3 TMIGD2-203ENST00000600114 489 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
HDDC3Q8N4P3 SNHG8-201ENST00000602414 672 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
HDDC3Q8N4P3 SNHG8-205ENST00000602819 470 ntTSL 2 BASIC17.04■□□□□ 0.32
HDDC3Q8N4P3 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC17.04■□□□□ 0.32
HDDC3Q8N4P3 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
HDDC3Q8N4P3 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
HDDC3Q8N4P3 PARD3-205ENST00000374773 3420 ntTSL 5 BASIC17.04■□□□□ 0.32
HDDC3Q8N4P3 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
HDDC3Q8N4P3 ANHX-201ENST00000419717 1765 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
HDDC3Q8N4P3 PPARD-202ENST00000337400 2041 ntTSL 5 BASIC17.04■□□□□ 0.32
HDDC3Q8N4P3 SUPT20H-203ENST00000360252 2843 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
HDDC3Q8N4P3 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC17.04■□□□□ 0.32
HDDC3Q8N4P3 AC093525.9-201ENST00000624961 1746 ntBASIC17.04■□□□□ 0.32
HDDC3Q8N4P3 TDRKH-202ENST00000368823 2751 ntAPPRIS ALT1 TSL 2 BASIC17.04■□□□□ 0.32
HDDC3Q8N4P3 BAG5-202ENST00000337322 1960 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
HDDC3Q8N4P3 OGG1-206ENST00000349503 1950 ntTSL 5 BASIC17.04■□□□□ 0.32
HDDC3Q8N4P3 TPR-209ENST00000613151 2478 ntTSL 5 BASIC17.04■□□□□ 0.32
HDDC3Q8N4P3 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
HDDC3Q8N4P3 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC17.04■□□□□ 0.32
HDDC3Q8N4P3 ATPAF1-214ENST00000576409 4158 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
HDDC3Q8N4P3 NDUFB2-AS1-201ENST00000465466 1648 ntTSL 2 BASIC17.03■□□□□ 0.32
HDDC3Q8N4P3 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC17.03■□□□□ 0.32
HDDC3Q8N4P3 B3GALT5-206ENST00000615480 2617 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
HDDC3Q8N4P3 TBX2-201ENST00000240328 3339 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
HDDC3Q8N4P3 PCDHA7-202ENST00000525929 5221 ntAPPRIS P2 TSL 1 (best) BASIC17.03■□□□□ 0.32
HDDC3Q8N4P3 OPCML-202ENST00000374778 1302 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
HDDC3Q8N4P3 KRT5-201ENST00000252242 2531 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
HDDC3Q8N4P3 MTERF2-201ENST00000240050 1790 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
HDDC3Q8N4P3 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
HDDC3Q8N4P3 MRGPRF-202ENST00000320913 705 ntTSL 2 BASIC17.03■□□□□ 0.32
HDDC3Q8N4P3 NKAIN2-201ENST00000368416 1106 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
HDDC3Q8N4P3 TRAPPC3-203ENST00000373163 951 ntTSL 3 BASIC17.03■□□□□ 0.32
HDDC3Q8N4P3 HNRNPFP1-201ENST00000391730 1133 ntBASIC17.03■□□□□ 0.32
HDDC3Q8N4P3 HRAS-204ENST00000417302 1233 ntTSL 5 BASIC17.03■□□□□ 0.32
HDDC3Q8N4P3 AL121832.1-203ENST00000433121 475 ntTSL 3 BASIC17.03■□□□□ 0.32
HDDC3Q8N4P3 AC140658.5-201ENST00000438532 169 ntBASIC17.03■□□□□ 0.32
HDDC3Q8N4P3 HRAS-205ENST00000451590 1151 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
HDDC3Q8N4P3 LINC01640-201ENST00000452505 550 ntTSL 4 BASIC17.03■□□□□ 0.32
HDDC3Q8N4P3 TAF8-206ENST00000472818 719 ntTSL 2 BASIC17.03■□□□□ 0.32
HDDC3Q8N4P3 AC067863.1-201ENST00000494933 530 ntBASIC17.03■□□□□ 0.32
HDDC3Q8N4P3 BATF2-204ENST00000527716 1230 ntTSL 2 BASIC17.03■□□□□ 0.32
HDDC3Q8N4P3 RPL28-205ENST00000558131 444 ntTSL 5 BASIC17.03■□□□□ 0.32
HDDC3Q8N4P3 DUT-210ENST00000559935 569 ntTSL 3 BASIC17.03■□□□□ 0.32
HDDC3Q8N4P3 IGHV3OR16-6-201ENST00000568775 360 ntBASIC17.03■□□□□ 0.32
HDDC3Q8N4P3 AC005412.3-201ENST00000580309 715 ntBASIC17.03■□□□□ 0.32
HDDC3Q8N4P3 PRR29-209ENST00000582540 967 ntTSL 2 BASIC17.03■□□□□ 0.32
HDDC3Q8N4P3 AC104971.3-201ENST00000589794 335 ntTSL 2 BASIC17.03■□□□□ 0.32
HDDC3Q8N4P3 AC110491.3-201ENST00000631985 460 ntTSL 2 BASIC17.03■□□□□ 0.32
HDDC3Q8N4P3 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
HDDC3Q8N4P3 ADGRB2-201ENST00000373655 5400 ntAPPRIS P4 TSL 1 (best) BASIC17.03■□□□□ 0.32
HDDC3Q8N4P3 ZNF280D-205ENST00000559000 4726 ntAPPRIS ALT2 TSL 2 BASIC17.03■□□□□ 0.32
HDDC3Q8N4P3 AC090286.1-201ENST00000354432 1489 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
HDDC3Q8N4P3 FBP1-201ENST00000375326 1462 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
HDDC3Q8N4P3 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
HDDC3Q8N4P3 ITPRIPL1-205ENST00000536814 1947 ntAPPRIS P1 TSL 3 BASIC17.03■□□□□ 0.32
HDDC3Q8N4P3 BAG3-201ENST00000369085 2571 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
HDDC3Q8N4P3 WDR53-201ENST00000332629 1679 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
HDDC3Q8N4P3 BSCL2-210ENST00000421906 1440 ntAPPRIS P3 TSL 5 BASIC17.03■□□□□ 0.32
HDDC3Q8N4P3 RAB1A-204ENST00000409892 2254 ntTSL 2 BASIC17.03■□□□□ 0.32
HDDC3Q8N4P3 ZFAND6-201ENST00000261749 1814 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
HDDC3Q8N4P3 AL138688.1-201ENST00000624851 1594 ntBASIC17.02■□□□□ 0.32
HDDC3Q8N4P3 SOGA3-203ENST00000525778 4077 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.32
HDDC3Q8N4P3 SDCBP-201ENST00000260130 2167 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.32
HDDC3Q8N4P3 RASA2-202ENST00000452898 2562 ntAPPRIS ALT2 TSL 5 BASIC17.02■□□□□ 0.32
HDDC3Q8N4P3 NR1H3-204ENST00000407404 1330 ntTSL 5 BASIC17.02■□□□□ 0.32
HDDC3Q8N4P3 SIRT6-203ENST00000594279 1507 ntTSL 3 BASIC17.02■□□□□ 0.32
HDDC3Q8N4P3 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
HDDC3Q8N4P3 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.32
HDDC3Q8N4P3 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.32
HDDC3Q8N4P3 LRP4-201ENST00000378623 8076 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
HDDC3Q8N4P3 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.32
HDDC3Q8N4P3 GCGR-201ENST00000400723 2051 ntAPPRIS P2 TSL 1 (best) BASIC17.02■□□□□ 0.32
HDDC3Q8N4P3 THEG-201ENST00000342640 1877 ntAPPRIS P4 TSL 1 (best) BASIC17.02■□□□□ 0.32
HDDC3Q8N4P3 TAPBP-238ENST00000475304 1686 ntAPPRIS ALT2 TSL 5 BASIC17.02■□□□□ 0.32
HDDC3Q8N4P3 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
HDDC3Q8N4P3 MRPL53-201ENST00000258105 1162 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
HDDC3Q8N4P3 LCN2-203ENST00000373017 848 ntAPPRIS P2 TSL 5 BASIC17.02■□□□□ 0.32
HDDC3Q8N4P3 PMS2P4-201ENST00000412466 1052 ntBASIC17.02■□□□□ 0.32
HDDC3Q8N4P3 PNKD-204ENST00000436005 978 ntTSL 5 BASIC17.02■□□□□ 0.32
HDDC3Q8N4P3 NDUFB2-202ENST00000460088 420 ntTSL 3 BASIC17.02■□□□□ 0.32
HDDC3Q8N4P3 LAMTOR4-206ENST00000473459 720 ntTSL 2 BASIC17.02■□□□□ 0.32
HDDC3Q8N4P3 FXYD6-209ENST00000530956 579 ntAPPRIS P2 TSL 2 BASIC17.02■□□□□ 0.32
HDDC3Q8N4P3 OR10S1-201ENST00000531945 1121 ntAPPRIS P2 BASIC17.02■□□□□ 0.32
HDDC3Q8N4P3 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
HDDC3Q8N4P3 INO80C-206ENST00000586489 594 ntTSL 3 BASIC17.02■□□□□ 0.32
HDDC3Q8N4P3 AC005498.2-205ENST00000593218 784 ntBASIC17.02■□□□□ 0.32
HDDC3Q8N4P3 GRIFIN-202ENST00000614228 461 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.32
HDDC3Q8N4P3 OR10S1-202ENST00000641123 1121 ntAPPRIS ALT2 BASIC17.02■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 38.1 ms