Protein–RNA interactions for Protein: Q8IV63

VRK3, Inactive serine/threonine-protein kinase VRK3, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3Q8IV63 SPIDR-227ENST00000541342 3311 ntAPPRIS ALT2 TSL 2 BASIC16.62■□□□□ 0.25
VRK3Q8IV63 NINL-201ENST00000278886 4969 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
VRK3Q8IV63 SNX27-203ENST00000368843 7197 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
VRK3Q8IV63 GJB3-201ENST00000373362 1797 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
VRK3Q8IV63 IL34-202ENST00000429149 1779 ntAPPRIS P2 TSL 5 BASIC16.62■□□□□ 0.25
VRK3Q8IV63 FMO5-208ENST00000578284 1784 ntTSL 5 BASIC16.62■□□□□ 0.25
VRK3Q8IV63 EPM2A-201ENST00000367519 3465 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
VRK3Q8IV63 GCH1-204ENST00000491895 2943 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
VRK3Q8IV63 OTOS-202ENST00000391989 645 ntAPPRIS P1 TSL 3 BASIC16.62■□□□□ 0.25
VRK3Q8IV63 FAM41C-202ENST00000432963 504 ntTSL 2 BASIC16.62■□□□□ 0.25
VRK3Q8IV63 HEXIM2-207ENST00000592695 1246 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
VRK3Q8IV63 AC008878.2-201ENST00000601870 942 ntAPPRIS P1 TSL 4 BASIC16.62■□□□□ 0.25
VRK3Q8IV63 MAGIX-204ENST00000614074 778 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
VRK3Q8IV63 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC16.62■□□□□ 0.25
VRK3Q8IV63 MEST-202ENST00000341441 2443 ntAPPRIS ALT1 TSL 1 (best) BASIC16.62■□□□□ 0.25
VRK3Q8IV63 TAL1-201ENST00000294339 5001 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
VRK3Q8IV63 CRKL-201ENST00000354336 5325 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
VRK3Q8IV63 KNOP1-205ENST00000568230 1311 ntAPPRIS ALT2 TSL 5 BASIC16.62■□□□□ 0.25
VRK3Q8IV63 SEPT6-209ENST00000489216 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC16.62■□□□□ 0.25
VRK3Q8IV63 ARHGAP33-201ENST00000007510 2545 ntAPPRIS ALT2 TSL 5 BASIC16.62■□□□□ 0.25
VRK3Q8IV63 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
VRK3Q8IV63 TCF3-204ENST00000453954 3585 ntTSL 5 BASIC16.62■□□□□ 0.25
VRK3Q8IV63 SORCS3-202ENST00000369701 5757 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
VRK3Q8IV63 SPOP-201ENST00000347630 2965 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
VRK3Q8IV63 XKR4-203ENST00000622811 3907 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
VRK3Q8IV63 AC104109.2-201ENST00000602919 1418 ntBASIC16.62■□□□□ 0.25
VRK3Q8IV63 KRT8P49-201ENST00000604166 1432 ntBASIC16.62■□□□□ 0.25
VRK3Q8IV63 MAP3K6-202ENST00000374040 4309 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
VRK3Q8IV63 PDCD5-203ENST00000419343 1799 ntTSL 2 BASIC16.61■□□□□ 0.25
VRK3Q8IV63 EPHX1-206ENST00000614058 1789 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
VRK3Q8IV63 DLC1-203ENST00000358919 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
VRK3Q8IV63 ZNF232-201ENST00000250076 2179 ntAPPRIS P3 TSL 5 BASIC16.61■□□□□ 0.25
VRK3Q8IV63 RAB15-203ENST00000533601 3515 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
VRK3Q8IV63 CD24-204ENST00000619133 2513 ntAPPRIS P3 TSL 2 BASIC16.61■□□□□ 0.25
VRK3Q8IV63 MTA1-201ENST00000331320 2876 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
VRK3Q8IV63 CBSL-202ENST00000617706 2563 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
VRK3Q8IV63 SLC39A13-202ENST00000362021 2296 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
VRK3Q8IV63 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
VRK3Q8IV63 ARID1B-202ENST00000346085 10194 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
VRK3Q8IV63 TBC1D20-201ENST00000354200 4466 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
VRK3Q8IV63 BSG-202ENST00000346916 1605 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
VRK3Q8IV63 ADIPOR1-202ENST00000367254 1116 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
VRK3Q8IV63 AP1S3-203ENST00000396654 830 ntAPPRIS P2 TSL 2 BASIC16.61■□□□□ 0.25
VRK3Q8IV63 MRPL20P1-201ENST00000400819 433 ntBASIC16.61■□□□□ 0.25
VRK3Q8IV63 RPL13AP23-201ENST00000480739 586 ntBASIC16.61■□□□□ 0.25
VRK3Q8IV63 LDLRAD2-203ENST00000543870 1180 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
VRK3Q8IV63 AC034105.1-201ENST00000563488 319 ntBASIC16.61■□□□□ 0.25
VRK3Q8IV63 MIR4751-201ENST00000578027 74 ntBASIC16.61■□□□□ 0.25
VRK3Q8IV63 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC16.61■□□□□ 0.25
VRK3Q8IV63 Z83851.2-201ENST00000609564 659 ntBASIC16.61■□□□□ 0.25
VRK3Q8IV63 AC120114.3-201ENST00000611923 658 ntBASIC16.61■□□□□ 0.25
VRK3Q8IV63 BVES-202ENST00000336775 1663 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
VRK3Q8IV63 PTHLH-202ENST00000395868 1674 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
VRK3Q8IV63 ADCY1-202ENST00000432715 1693 ntTSL 2 BASIC16.61■□□□□ 0.25
VRK3Q8IV63 TUBB8P12-201ENST00000308911 1335 ntBASIC16.61■□□□□ 0.25
VRK3Q8IV63 KIF25-201ENST00000351261 1326 ntTSL 5 BASIC16.61■□□□□ 0.25
VRK3Q8IV63 TUBB7P-202ENST00000428444 1305 ntBASIC16.61■□□□□ 0.25
VRK3Q8IV63 TUBB8P7-204ENST00000567960 1332 ntBASIC16.61■□□□□ 0.25
VRK3Q8IV63 DHRS7-212ENST00000611054 1321 ntTSL 5 BASIC16.61■□□□□ 0.25
VRK3Q8IV63 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC16.61■□□□□ 0.25
VRK3Q8IV63 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC16.61■□□□□ 0.25
VRK3Q8IV63 KLHDC8A-205ENST00000539253 2931 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
VRK3Q8IV63 FGFBP1-201ENST00000382333 1359 ntAPPRIS P1 TSL 3 BASIC16.61■□□□□ 0.25
VRK3Q8IV63 AL021920.2-201ENST00000624828 1351 ntBASIC16.61■□□□□ 0.25
VRK3Q8IV63 RBPJ-204ENST00000348160 1752 ntAPPRIS ALT1 TSL 1 (best) BASIC16.61■□□□□ 0.25
VRK3Q8IV63 APLNR-203ENST00000611099 1789 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
VRK3Q8IV63 CCDC154-202ENST00000409671 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
VRK3Q8IV63 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
VRK3Q8IV63 EDN3-202ENST00000337938 2636 ntAPPRIS P4 TSL 1 (best) BASIC16.61■□□□□ 0.25
VRK3Q8IV63 EPN2-203ENST00000395618 2216 ntTSL 2 BASIC16.61■□□□□ 0.25
VRK3Q8IV63 TSPAN4-205ENST00000397406 1426 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
VRK3Q8IV63 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC16.61■□□□□ 0.25
VRK3Q8IV63 CDC42EP3-201ENST00000295324 5700 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
VRK3Q8IV63 SPAG6-202ENST00000376603 2770 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
VRK3Q8IV63 HIBCH-201ENST00000359678 1939 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
VRK3Q8IV63 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC16.6■□□□□ 0.25
VRK3Q8IV63 C12orf56-207ENST00000543942 3242 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
VRK3Q8IV63 CEBPG-201ENST00000284000 4109 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
VRK3Q8IV63 RASL11A-201ENST00000241463 1543 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
VRK3Q8IV63 DNAH14-206ENST00000400952 1984 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
VRK3Q8IV63 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
VRK3Q8IV63 AUNIP-201ENST00000374298 2116 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
VRK3Q8IV63 ADCY8-201ENST00000286355 5938 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
VRK3Q8IV63 WDR53-201ENST00000332629 1679 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
VRK3Q8IV63 KCTD14-201ENST00000353172 1691 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
VRK3Q8IV63 TCP1-203ENST00000420894 1671 ntTSL 5 BASIC16.6■□□□□ 0.25
VRK3Q8IV63 NCOA5-201ENST00000290231 3220 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
VRK3Q8IV63 CERCAM-202ENST00000372842 5201 ntAPPRIS ALT2 TSL 5 BASIC16.6■□□□□ 0.25
VRK3Q8IV63 DFNA5-207ENST00000419307 2265 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
VRK3Q8IV63 ZNF789-202ENST00000379724 510 ntTSL 2 BASIC16.6■□□□□ 0.25
VRK3Q8IV63 ABHD11-203ENST00000395147 812 ntTSL 3 BASIC16.6■□□□□ 0.25
VRK3Q8IV63 MCFD2-205ENST00000409218 648 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
VRK3Q8IV63 SLC4A1APP2-201ENST00000424054 1259 ntBASIC16.6■□□□□ 0.25
VRK3Q8IV63 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC16.6■□□□□ 0.25
VRK3Q8IV63 AC145285.3-201ENST00000564603 959 ntBASIC16.6■□□□□ 0.25
VRK3Q8IV63 BABAM1-206ENST00000595632 966 ntAPPRIS ALT2 TSL 5 BASIC16.6■□□□□ 0.25
VRK3Q8IV63 BX640515.1-201ENST00000617215 977 ntBASIC16.6■□□□□ 0.25
VRK3Q8IV63 NME4-212ENST00000621774 904 ntTSL 3 BASIC16.6■□□□□ 0.25
VRK3Q8IV63 AC244517.11-201ENST00000624192 573 ntTSL 5 BASIC16.6■□□□□ 0.25
VRK3Q8IV63 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC16.6■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 47.8 ms