Protein–RNA interactions for Protein: Q6ZMZ3

SYNE3, Nesprin-3, humanhuman

Predictions only

Length 975 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3Q6ZMZ3 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC20.06■□□□□ 0.8
SYNE3Q6ZMZ3 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC20.06■□□□□ 0.8
SYNE3Q6ZMZ3 AL662844.1-201ENST00000546340 181 ntBASIC20.06■□□□□ 0.8
SYNE3Q6ZMZ3 ATP5G2-204ENST00000549164 745 ntAPPRIS P1 TSL 3 BASIC20.06■□□□□ 0.8
SYNE3Q6ZMZ3 AC105339.3-201ENST00000560043 636 ntBASIC20.06■□□□□ 0.8
SYNE3Q6ZMZ3 ATP5G2-209ENST00000602871 668 ntAPPRIS P1 TSL 2 BASIC20.06■□□□□ 0.8
SYNE3Q6ZMZ3 CD24-201ENST00000606017 2180 ntAPPRIS P3 TSL 1 (best) BASIC20.06■□□□□ 0.8
SYNE3Q6ZMZ3 ANO2-212ENST00000612575 1087 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
SYNE3Q6ZMZ3 AC092902.2-205ENST00000622381 394 ntTSL 5 BASIC20.06■□□□□ 0.8
SYNE3Q6ZMZ3 AC148477.8-201ENST00000624298 468 ntBASIC20.06■□□□□ 0.8
SYNE3Q6ZMZ3 RHOF-201ENST00000267205 3009 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
SYNE3Q6ZMZ3 RNF128-201ENST00000255499 2817 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
SYNE3Q6ZMZ3 H2AFV-201ENST00000222690 3804 ntAPPRIS ALT1 TSL 2 BASIC20.06■□□□□ 0.8
SYNE3Q6ZMZ3 LINC01569-202ENST00000573042 2093 ntTSL 2 BASIC20.06■□□□□ 0.8
SYNE3Q6ZMZ3 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
SYNE3Q6ZMZ3 RAD1-202ENST00000341754 2341 ntAPPRIS P1 TSL 5 BASIC20.05■□□□□ 0.8
SYNE3Q6ZMZ3 JAK3-201ENST00000458235 5432 ntAPPRIS P2 TSL 5 BASIC20.05■□□□□ 0.8
SYNE3Q6ZMZ3 INHA-201ENST00000243786 1468 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
SYNE3Q6ZMZ3 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
SYNE3Q6ZMZ3 OVCH1-AS1-204ENST00000641955 5529 ntBASIC20.05■□□□□ 0.8
SYNE3Q6ZMZ3 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC20.05■□□□□ 0.8
SYNE3Q6ZMZ3 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
SYNE3Q6ZMZ3 AC006504.4-201ENST00000592118 1568 ntBASIC20.05■□□□□ 0.8
SYNE3Q6ZMZ3 MBL1P-201ENST00000480805 1424 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
SYNE3Q6ZMZ3 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
SYNE3Q6ZMZ3 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
SYNE3Q6ZMZ3 ACBD3-201ENST00000366812 3573 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
SYNE3Q6ZMZ3 UCHL5-206ENST00000367455 5327 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.8
SYNE3Q6ZMZ3 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC20.05■□□□□ 0.8
SYNE3Q6ZMZ3 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
SYNE3Q6ZMZ3 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
SYNE3Q6ZMZ3 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
SYNE3Q6ZMZ3 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC20.05■□□□□ 0.8
SYNE3Q6ZMZ3 PPIE-208ENST00000470213 927 ntTSL 3 BASIC20.05■□□□□ 0.8
SYNE3Q6ZMZ3 AC093909.1-201ENST00000504731 1122 ntBASIC20.05■□□□□ 0.8
SYNE3Q6ZMZ3 REPIN1-217ENST00000518514 478 ntTSL 3 BASIC20.05■□□□□ 0.8
SYNE3Q6ZMZ3 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC20.05■□□□□ 0.8
SYNE3Q6ZMZ3 KANSL2-212ENST00000550347 2714 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
SYNE3Q6ZMZ3 SCNN1A-205ENST00000396966 2336 ntTSL 3 BASIC20.05■□□□□ 0.8
SYNE3Q6ZMZ3 CLDN7-201ENST00000360325 1542 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
SYNE3Q6ZMZ3 FRMD8P1-201ENST00000440433 1524 ntBASIC20.05■□□□□ 0.8
SYNE3Q6ZMZ3 HPN-202ENST00000392226 1783 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
SYNE3Q6ZMZ3 MYO1D-201ENST00000318217 5563 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
SYNE3Q6ZMZ3 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC20.05■□□□□ 0.8
SYNE3Q6ZMZ3 CALB2-202ENST00000349553 1373 ntTSL 5 BASIC20.05■□□□□ 0.8
SYNE3Q6ZMZ3 NAA50-209ENST00000497525 1385 ntTSL 2 BASIC20.05■□□□□ 0.8
SYNE3Q6ZMZ3 PCDHA3-201ENST00000522353 5260 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
SYNE3Q6ZMZ3 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
SYNE3Q6ZMZ3 GALNT10-203ENST00000425427 4344 ntTSL 2 BASIC20.05■□□□□ 0.8
SYNE3Q6ZMZ3 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
SYNE3Q6ZMZ3 IGLON5-201ENST00000270642 2606 ntAPPRIS P1 TSL 5 BASIC20.05■□□□□ 0.8
SYNE3Q6ZMZ3 DENND3-201ENST00000262585 5438 ntAPPRIS P2 TSL 5 BASIC20.05■□□□□ 0.8
SYNE3Q6ZMZ3 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC20.04■□□□□ 0.8
SYNE3Q6ZMZ3 KCNMA1-261ENST00000639486 8850 ntAPPRIS ALT2 TSL 5 BASIC20.04■□□□□ 0.8
SYNE3Q6ZMZ3 HNRNPU-205ENST00000444376 6827 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
SYNE3Q6ZMZ3 CARNS1-201ENST00000307823 3942 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
SYNE3Q6ZMZ3 SNTG2-202ENST00000407292 1436 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
SYNE3Q6ZMZ3 AC008969.1-201ENST00000550135 6438 ntTSL 2 BASIC20.04■□□□□ 0.8
SYNE3Q6ZMZ3 SMUG1-209ENST00000505128 2607 ntTSL 2 BASIC20.04■□□□□ 0.8
SYNE3Q6ZMZ3 DCTN3-201ENST00000259632 808 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
SYNE3Q6ZMZ3 GSTZ1-202ENST00000349555 867 ntTSL 2 BASIC20.04■□□□□ 0.8
SYNE3Q6ZMZ3 PTCHD3P3-201ENST00000403073 906 ntBASIC20.04■□□□□ 0.8
SYNE3Q6ZMZ3 ELK2BP-201ENST00000415014 1224 ntBASIC20.04■□□□□ 0.8
SYNE3Q6ZMZ3 AL031284.1-201ENST00000419297 478 ntBASIC20.04■□□□□ 0.8
SYNE3Q6ZMZ3 DHRS12-203ENST00000444610 1162 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
SYNE3Q6ZMZ3 AC136632.2-201ENST00000512891 861 ntBASIC20.04■□□□□ 0.8
SYNE3Q6ZMZ3 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC20.04■□□□□ 0.8
SYNE3Q6ZMZ3 FAM215A-202ENST00000632077 792 ntBASIC20.04■□□□□ 0.8
SYNE3Q6ZMZ3 ADORA1-209ENST00000640524 653 ntTSL 5 BASIC20.04■□□□□ 0.8
SYNE3Q6ZMZ3 PACSIN2-205ENST00000407585 3080 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
SYNE3Q6ZMZ3 GCH1-204ENST00000491895 2943 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
SYNE3Q6ZMZ3 ADM5-201ENST00000420022 1718 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
SYNE3Q6ZMZ3 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
SYNE3Q6ZMZ3 MIER1-204ENST00000371012 2420 ntTSL 2 BASIC20.04■□□□□ 0.8
SYNE3Q6ZMZ3 THAP8-201ENST00000292894 1825 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
SYNE3Q6ZMZ3 CHTOP-203ENST00000368690 2165 ntAPPRIS ALT1 TSL 1 (best) BASIC20.04■□□□□ 0.8
SYNE3Q6ZMZ3 GSS-201ENST00000216951 1922 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
SYNE3Q6ZMZ3 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
SYNE3Q6ZMZ3 AC060834.1-201ENST00000443027 2032 ntBASIC20.03■□□□□ 0.8
SYNE3Q6ZMZ3 SH3BP4-201ENST00000344528 5044 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
SYNE3Q6ZMZ3 DMRTC2-204ENST00000596827 1675 ntTSL 2 BASIC20.03■□□□□ 0.8
SYNE3Q6ZMZ3 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC20.03■□□□□ 0.8
SYNE3Q6ZMZ3 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC20.03■□□□□ 0.8
SYNE3Q6ZMZ3 ARHGAP9-204ENST00000430041 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
SYNE3Q6ZMZ3 PHKA1-202ENST00000373539 4476 ntTSL 5 BASIC20.03■□□□□ 0.8
SYNE3Q6ZMZ3 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC20.03■□□□□ 0.8
SYNE3Q6ZMZ3 LUC7L3-201ENST00000240304 1972 ntAPPRIS P1 TSL 2 BASIC20.03■□□□□ 0.8
SYNE3Q6ZMZ3 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
SYNE3Q6ZMZ3 DPEP1-203ENST00000421184 1647 ntAPPRIS P1 TSL 5 BASIC20.03■□□□□ 0.8
SYNE3Q6ZMZ3 ARID5A-203ENST00000454558 3079 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
SYNE3Q6ZMZ3 RAB1A-204ENST00000409892 2254 ntTSL 2 BASIC20.03■□□□□ 0.8
SYNE3Q6ZMZ3 HBA2-201ENST00000251595 605 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
SYNE3Q6ZMZ3 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC20.03■□□□□ 0.8
SYNE3Q6ZMZ3 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
SYNE3Q6ZMZ3 PQLC2L-205ENST00000461040 563 ntAPPRIS ALT2 TSL 3 BASIC20.03■□□□□ 0.8
SYNE3Q6ZMZ3 HFE-210ENST00000470149 1123 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
SYNE3Q6ZMZ3 AP000688.1-201ENST00000535199 1221 ntTSL 2 BASIC20.03■□□□□ 0.8
SYNE3Q6ZMZ3 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC20.03■□□□□ 0.8
SYNE3Q6ZMZ3 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC20.03■□□□□ 0.8
SYNE3Q6ZMZ3 CYGB-205ENST00000590175 830 ntTSL 3 BASIC20.03■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 26.9 ms