Protein–RNA interactions for Protein: Q6DD88

ATL3, Atlastin-3, humanhuman

Predictions only

Length 541 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATL3Q6DD88 GCK-209ENST00000616242 2260 ntTSL 5 BASIC19.42■□□□□ 0.7
ATL3Q6DD88 NCF1C-201ENST00000438382 1427 ntBASIC19.42■□□□□ 0.7
ATL3Q6DD88 EDN3-205ENST00000395654 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
ATL3Q6DD88 HPGD-213ENST00000541923 2920 ntTSL 2 BASIC19.42■□□□□ 0.7
ATL3Q6DD88 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC19.42■□□□□ 0.7
ATL3Q6DD88 SYNDIG1L-202ENST00000554823 2420 ntAPPRIS P1 TSL 3 BASIC19.42■□□□□ 0.7
ATL3Q6DD88 TBC1D2B-201ENST00000300584 6067 ntAPPRIS ALT2 TSL 5 BASIC19.42■□□□□ 0.7
ATL3Q6DD88 ZMYM3-202ENST00000373978 1511 ntTSL 5 BASIC19.42■□□□□ 0.7
ATL3Q6DD88 WT1-203ENST00000379079 2466 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
ATL3Q6DD88 CYP2R1-201ENST00000334636 2235 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
ATL3Q6DD88 AL353608.3-201ENST00000603200 2211 ntTSL 5 BASIC19.42■□□□□ 0.7
ATL3Q6DD88 PXMP4-201ENST00000217398 979 ntTSL 2 BASIC19.42■□□□□ 0.7
ATL3Q6DD88 PSCA-201ENST00000301258 1020 ntAPPRIS P2 TSL 1 (best) BASIC19.42■□□□□ 0.7
ATL3Q6DD88 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
ATL3Q6DD88 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
ATL3Q6DD88 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
ATL3Q6DD88 AC069368.1-202ENST00000437723 750 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
ATL3Q6DD88 FAM210CP-201ENST00000445714 574 ntBASIC19.42■□□□□ 0.7
ATL3Q6DD88 AC106795.1-205ENST00000512851 1056 ntBASIC19.42■□□□□ 0.7
ATL3Q6DD88 AP002807.1-202ENST00000526897 791 ntTSL 2 BASIC19.42■□□□□ 0.7
ATL3Q6DD88 OPN5-206ENST00000638973 1090 ntTSL 5 BASIC19.42■□□□□ 0.7
ATL3Q6DD88 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
ATL3Q6DD88 SRF-201ENST00000265354 4202 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
ATL3Q6DD88 FBXO4-201ENST00000281623 1682 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
ATL3Q6DD88 NCAPH2-205ENST00000420993 2037 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
ATL3Q6DD88 AIFM3-202ENST00000399167 2387 ntAPPRIS P3 TSL 2 BASIC19.42■□□□□ 0.7
ATL3Q6DD88 AIFM3-207ENST00000440238 2368 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
ATL3Q6DD88 CLU-215ENST00000523500 2381 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
ATL3Q6DD88 WDR20-211ENST00000556807 2382 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
ATL3Q6DD88 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
ATL3Q6DD88 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC19.42■□□□□ 0.7
ATL3Q6DD88 KLC1-207ENST00000445352 2416 ntTSL 5 BASIC19.42■□□□□ 0.7
ATL3Q6DD88 TLE3-212ENST00000558201 2766 ntTSL 5 BASIC19.42■□□□□ 0.7
ATL3Q6DD88 LAPTM4B-201ENST00000445593 3173 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
ATL3Q6DD88 LCK-202ENST00000336890 2117 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
ATL3Q6DD88 SERINC2-202ENST00000373710 2146 ntTSL 2 BASIC19.42■□□□□ 0.7
ATL3Q6DD88 ADRA1A-204ENST00000380573 2548 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
ATL3Q6DD88 TMC3-AS1-203ENST00000559781 2195 ntTSL 3 BASIC19.42■□□□□ 0.7
ATL3Q6DD88 BCRP2-201ENST00000398241 1842 ntTSL 2 BASIC19.41■□□□□ 0.7
ATL3Q6DD88 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC19.41■□□□□ 0.7
ATL3Q6DD88 RASSF5-205ENST00000581503 5586 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
ATL3Q6DD88 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
ATL3Q6DD88 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC19.41■□□□□ 0.7
ATL3Q6DD88 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
ATL3Q6DD88 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC19.41■□□□□ 0.7
ATL3Q6DD88 SERPINB6-207ENST00000612421 1570 ntTSL 2 BASIC19.41■□□□□ 0.7
ATL3Q6DD88 CCDC40-201ENST00000269318 1970 ntTSL 2 BASIC19.41■□□□□ 0.7
ATL3Q6DD88 STKLD1-201ENST00000371957 2825 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
ATL3Q6DD88 EDC3-202ENST00000426797 2093 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
ATL3Q6DD88 LINC00487-201ENST00000382045 2131 ntTSL 2 BASIC19.41■□□□□ 0.7
ATL3Q6DD88 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
ATL3Q6DD88 COPS8-203ENST00000409334 794 ntTSL 5 BASIC19.41■□□□□ 0.7
ATL3Q6DD88 DDOST-202ENST00000415136 2126 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
ATL3Q6DD88 ZNF346-205ENST00000506693 1276 ntTSL 2 BASIC19.41■□□□□ 0.7
ATL3Q6DD88 AC103957.2-201ENST00000521218 510 ntTSL 2 BASIC19.41■□□□□ 0.7
ATL3Q6DD88 SELENOH-204ENST00000534355 818 ntAPPRIS P2 TSL 1 (best) BASIC19.41■□□□□ 0.7
ATL3Q6DD88 ARL16-209ENST00000573715 763 ntTSL 3 BASIC19.41■□□□□ 0.7
ATL3Q6DD88 ARL16-211ENST00000576135 694 ntTSL 3 BASIC19.41■□□□□ 0.7
ATL3Q6DD88 SRSF1-209ENST00000585096 568 ntTSL 4 BASIC19.41■□□□□ 0.7
ATL3Q6DD88 AC008735.1-201ENST00000592252 802 ntTSL 5 BASIC19.41■□□□□ 0.7
ATL3Q6DD88 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
ATL3Q6DD88 PAX3-207ENST00000409551 1782 ntAPPRIS ALT1 TSL 1 (best) BASIC19.41■□□□□ 0.7
ATL3Q6DD88 TOP3BP1-201ENST00000420768 1380 ntBASIC19.41■□□□□ 0.7
ATL3Q6DD88 HEYL-201ENST00000372852 3661 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
ATL3Q6DD88 TINF2-208ENST00000558566 1874 ntAPPRIS ALT2 TSL 2 BASIC19.41■□□□□ 0.7
ATL3Q6DD88 MPIG6B-204ENST00000375809 2396 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
ATL3Q6DD88 NAIF1-201ENST00000373078 3399 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
ATL3Q6DD88 AC005329.1-201ENST00000501448 3571 ntTSL 2 BASIC19.41■□□□□ 0.7
ATL3Q6DD88 F3-201ENST00000334047 2287 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
ATL3Q6DD88 HCN1-201ENST00000303230 9885 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
ATL3Q6DD88 C20orf166-AS1-201ENST00000412495 2302 ntTSL 2 BASIC19.4■□□□□ 0.7
ATL3Q6DD88 ZNF354C-201ENST00000315475 5411 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
ATL3Q6DD88 GYG1-201ENST00000296048 1890 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
ATL3Q6DD88 NDUFA11-201ENST00000308961 539 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
ATL3Q6DD88 CDKN1C-201ENST00000380725 1220 ntAPPRIS ALT2 TSL 2 BASIC19.4■□□□□ 0.7
ATL3Q6DD88 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC19.4■□□□□ 0.7
ATL3Q6DD88 IFT27-205ENST00000433985 1095 ntAPPRIS ALT1 TSL 1 (best) BASIC19.4■□□□□ 0.7
ATL3Q6DD88 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC19.4■□□□□ 0.7
ATL3Q6DD88 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC19.4■□□□□ 0.7
ATL3Q6DD88 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
ATL3Q6DD88 RBPMS-AS1-202ENST00000519753 1031 ntTSL 5 BASIC19.4■□□□□ 0.7
ATL3Q6DD88 SSSCA1-206ENST00000531405 879 ntTSL 2 BASIC19.4■□□□□ 0.7
ATL3Q6DD88 CMC2-212ENST00000565650 671 ntAPPRIS P1 TSL 2 BASIC19.4■□□□□ 0.7
ATL3Q6DD88 AC016876.1-204ENST00000573187 679 ntTSL 3 BASIC19.4■□□□□ 0.7
ATL3Q6DD88 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC19.4■□□□□ 0.7
ATL3Q6DD88 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC19.4■□□□□ 0.7
ATL3Q6DD88 AL022326.1-202ENST00000641533 845 ntBASIC19.4■□□□□ 0.7
ATL3Q6DD88 TEX19-201ENST00000333437 1936 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
ATL3Q6DD88 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC19.4■□□□□ 0.7
ATL3Q6DD88 FOXN1-203ENST00000579795 2145 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
ATL3Q6DD88 CYP46A1-201ENST00000261835 2181 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
ATL3Q6DD88 IQCC-202ENST00000537469 2252 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
ATL3Q6DD88 AC104809.1-201ENST00000425110 2345 ntTSL 2 BASIC19.4■□□□□ 0.7
ATL3Q6DD88 ATG3-201ENST00000283290 1570 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
ATL3Q6DD88 RAB23-202ENST00000468148 4837 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
ATL3Q6DD88 ADCY1-204ENST00000621543 1647 ntTSL 5 BASIC19.4■□□□□ 0.7
ATL3Q6DD88 DPY19L3-206ENST00000587077 2456 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
ATL3Q6DD88 PTHLH-202ENST00000395868 1674 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
ATL3Q6DD88 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC19.4■□□□□ 0.7
ATL3Q6DD88 SHE-201ENST00000304760 6243 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 35.8 ms