Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 AC090340.1-201ENST00000620778 4980 ntBASIC19.77■□□□□ 0.76
CCDC144BQ3MJ40 ST3GAL6-214ENST00000483910 1886 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
CCDC144BQ3MJ40 SLC52A1-202ENST00000424747 2412 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
CCDC144BQ3MJ40 SLC35G1-202ENST00000427197 2402 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
CCDC144BQ3MJ40 RER1-202ENST00000378512 1404 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
CCDC144BQ3MJ40 GPR135-201ENST00000395116 4578 ntAPPRIS P1 BASIC19.77■□□□□ 0.76
CCDC144BQ3MJ40 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
CCDC144BQ3MJ40 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC19.77■□□□□ 0.76
CCDC144BQ3MJ40 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
CCDC144BQ3MJ40 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC19.77■□□□□ 0.76
CCDC144BQ3MJ40 CHST8-201ENST00000262622 2479 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
CCDC144BQ3MJ40 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC19.77■□□□□ 0.76
CCDC144BQ3MJ40 NECTIN1-202ENST00000340882 1059 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
CCDC144BQ3MJ40 MYL6-202ENST00000348108 722 ntAPPRIS ALT1 TSL 3 BASIC19.77■□□□□ 0.76
CCDC144BQ3MJ40 GSTO1-202ENST00000369713 972 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
CCDC144BQ3MJ40 HSD17B8-203ENST00000374662 990 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
CCDC144BQ3MJ40 HIST1H2BD-202ENST00000377777 496 ntAPPRIS P1 BASIC19.77■□□□□ 0.76
CCDC144BQ3MJ40 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC19.77■□□□□ 0.76
CCDC144BQ3MJ40 HYAL1-206ENST00000447605 666 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
CCDC144BQ3MJ40 AL669831.5-202ENST00000457084 566 ntTSL 4 BASIC19.77■□□□□ 0.76
CCDC144BQ3MJ40 CFL1-202ENST00000524553 860 ntTSL 2 BASIC19.77■□□□□ 0.76
CCDC144BQ3MJ40 MAL2-202ENST00000531508 892 ntTSL 3 BASIC19.77■□□□□ 0.76
CCDC144BQ3MJ40 MIR4469-201ENST00000583919 79 ntBASIC19.77■□□□□ 0.76
CCDC144BQ3MJ40 AC008761.1-201ENST00000595363 217 ntTSL 5 BASIC19.77■□□□□ 0.76
CCDC144BQ3MJ40 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC19.77■□□□□ 0.76
CCDC144BQ3MJ40 MAPK8IP1-202ENST00000395629 3180 ntTSL 5 BASIC19.77■□□□□ 0.76
CCDC144BQ3MJ40 MYEOV-203ENST00000535407 2306 ntAPPRIS ALT2 TSL 2 BASIC19.77■□□□□ 0.76
CCDC144BQ3MJ40 VSTM2A-204ENST00000407838 3112 ntAPPRIS P1 TSL 3 BASIC19.77■□□□□ 0.76
CCDC144BQ3MJ40 ZNF703-201ENST00000331569 3349 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
CCDC144BQ3MJ40 PIAS3-201ENST00000369298 2761 ntTSL 5 BASIC19.77■□□□□ 0.75
CCDC144BQ3MJ40 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
CCDC144BQ3MJ40 FAM3D-201ENST00000358781 1319 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CCDC144BQ3MJ40 KRT18P28-201ENST00000453838 1332 ntBASIC19.76■□□□□ 0.75
CCDC144BQ3MJ40 PRKN-202ENST00000366892 1505 ntTSL 5 BASIC19.76■□□□□ 0.75
CCDC144BQ3MJ40 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CCDC144BQ3MJ40 AC125494.1-203ENST00000396799 1622 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
CCDC144BQ3MJ40 MEG3-205ENST00000412736 1615 ntTSL 2 BASIC19.76■□□□□ 0.75
CCDC144BQ3MJ40 PC-208ENST00000529047 1607 ntTSL 3 BASIC19.76■□□□□ 0.75
CCDC144BQ3MJ40 ISPD-201ENST00000399310 1709 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
CCDC144BQ3MJ40 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC19.76■□□□□ 0.75
CCDC144BQ3MJ40 C10orf10-201ENST00000298295 2120 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CCDC144BQ3MJ40 NFATC1-208ENST00000586434 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
CCDC144BQ3MJ40 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CCDC144BQ3MJ40 ZNF18-204ENST00000580306 2330 ntAPPRIS P3 TSL 2 BASIC19.76■□□□□ 0.75
CCDC144BQ3MJ40 GUCY1A2-202ENST00000347596 2532 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
CCDC144BQ3MJ40 NIPA2-201ENST00000337451 3233 ntAPPRIS P1 TSL 5 BASIC19.76■□□□□ 0.75
CCDC144BQ3MJ40 NFE2L3-201ENST00000056233 3686 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CCDC144BQ3MJ40 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC19.76■□□□□ 0.75
CCDC144BQ3MJ40 PNO1-201ENST00000263657 2286 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CCDC144BQ3MJ40 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CCDC144BQ3MJ40 TYROBP-201ENST00000262629 568 ntAPPRIS P3 TSL 1 (best) BASIC19.76■□□□□ 0.75
CCDC144BQ3MJ40 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
CCDC144BQ3MJ40 SPDYC-201ENST00000377185 991 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CCDC144BQ3MJ40 EXOSC8-202ENST00000389704 1198 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CCDC144BQ3MJ40 PIGBOS1-201ENST00000436697 866 ntAPPRIS P2 TSL 2 BASIC19.76■□□□□ 0.75
CCDC144BQ3MJ40 AC063976.1-201ENST00000457890 381 ntTSL 2 BASIC19.76■□□□□ 0.75
CCDC144BQ3MJ40 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC19.76■□□□□ 0.75
CCDC144BQ3MJ40 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC19.76■□□□□ 0.75
CCDC144BQ3MJ40 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC19.76■□□□□ 0.75
CCDC144BQ3MJ40 RPS15-207ENST00000591032 550 ntTSL 3 BASIC19.76■□□□□ 0.75
CCDC144BQ3MJ40 U73166.1-201ENST00000439898 2625 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
CCDC144BQ3MJ40 RIC8B-203ENST00000392839 2440 ntAPPRIS P3 TSL 1 (best) BASIC19.76■□□□□ 0.75
CCDC144BQ3MJ40 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC19.76■□□□□ 0.75
CCDC144BQ3MJ40 ISLR2-201ENST00000361742 4817 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CCDC144BQ3MJ40 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC19.76■□□□□ 0.75
CCDC144BQ3MJ40 PRRT2-219ENST00000637565 1733 ntTSL 5 BASIC19.76■□□□□ 0.75
CCDC144BQ3MJ40 SSPN-201ENST00000242729 2788 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CCDC144BQ3MJ40 TSPAN17-209ENST00000515708 2361 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CCDC144BQ3MJ40 BICD1-205ENST00000550207 1328 ntTSL 3 BASIC19.76■□□□□ 0.75
CCDC144BQ3MJ40 RABL2A-204ENST00000393167 2179 ntAPPRIS P3 TSL 1 (best) BASIC19.76■□□□□ 0.75
CCDC144BQ3MJ40 PML-206ENST00000395135 2199 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
CCDC144BQ3MJ40 CNPPD1-201ENST00000360507 2060 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
CCDC144BQ3MJ40 ZBTB9-201ENST00000395064 2716 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
CCDC144BQ3MJ40 KCNQ2-236ENST00000637193 2983 ntTSL 5 BASIC19.75■□□□□ 0.75
CCDC144BQ3MJ40 MAP4K4-204ENST00000350198 7316 ntTSL 5 BASIC19.75■□□□□ 0.75
CCDC144BQ3MJ40 LZTS3-203ENST00000360342 4055 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
CCDC144BQ3MJ40 ZNF12-204ENST00000405858 5051 ntAPPRIS P4 TSL 1 (best) BASIC19.75■□□□□ 0.75
CCDC144BQ3MJ40 KCNA7-201ENST00000221444 4372 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
CCDC144BQ3MJ40 FIGLA-201ENST00000332372 722 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
CCDC144BQ3MJ40 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC19.75■□□□□ 0.75
CCDC144BQ3MJ40 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC19.75■□□□□ 0.75
CCDC144BQ3MJ40 ADARB2-201ENST00000381305 703 ntTSL 2 BASIC19.75■□□□□ 0.75
CCDC144BQ3MJ40 TIMM17B-202ENST00000396779 1099 ntTSL 5 BASIC19.75■□□□□ 0.75
CCDC144BQ3MJ40 CMTM3-205ENST00000562707 714 ntAPPRIS P1 TSL 3 BASIC19.75■□□□□ 0.75
CCDC144BQ3MJ40 OAZ1-202ENST00000582888 969 ntAPPRIS ALT1 TSL 5 BASIC19.75■□□□□ 0.75
CCDC144BQ3MJ40 C20orf181-201ENST00000623918 480 ntBASIC19.75■□□□□ 0.75
CCDC144BQ3MJ40 CCT6A-201ENST00000275603 2719 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
CCDC144BQ3MJ40 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC19.75■□□□□ 0.75
CCDC144BQ3MJ40 EWSAT1-206ENST00000558922 1725 ntTSL 5 BASIC19.75■□□□□ 0.75
CCDC144BQ3MJ40 ETV4-211ENST00000591713 1727 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
CCDC144BQ3MJ40 MREG-205ENST00000620139 2618 ntAPPRIS P1 TSL 2 BASIC19.75■□□□□ 0.75
CCDC144BQ3MJ40 PDE1C-201ENST00000321453 2898 ntAPPRIS ALT1 TSL 2 BASIC19.75■□□□□ 0.75
CCDC144BQ3MJ40 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
CCDC144BQ3MJ40 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC19.75■□□□□ 0.75
CCDC144BQ3MJ40 CHST10-201ENST00000264249 2842 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
CCDC144BQ3MJ40 PPP1R18-201ENST00000274853 4599 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
CCDC144BQ3MJ40 PPP1R18-205ENST00000615527 4597 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
CCDC144BQ3MJ40 SYTL3-202ENST00000360448 2504 ntAPPRIS ALT1 TSL 5 BASIC19.74■□□□□ 0.75
CCDC144BQ3MJ40 AC009949.1-201ENST00000623048 1830 ntBASIC19.74■□□□□ 0.75
CCDC144BQ3MJ40 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC19.74■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 43.9 ms