Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 MFSD1-202ENST00000392813 2244 ntTSL 2 BASIC16.76■□□□□ 0.27
PKNOX1P55347 ANKRD35-202ENST00000544626 3093 ntTSL 5 BASIC16.76■□□□□ 0.27
PKNOX1P55347 WBP2-204ENST00000585462 1895 ntTSL 3 BASIC16.76■□□□□ 0.27
PKNOX1P55347 ZDHHC24-201ENST00000310442 4721 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
PKNOX1P55347 PAX4-202ENST00000341640 2010 ntAPPRIS P2 TSL 1 (best) BASIC16.75■□□□□ 0.27
PKNOX1P55347 SLC25A45-201ENST00000294187 2196 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
PKNOX1P55347 FAM86DP-207ENST00000497543 2152 ntTSL 2 BASIC16.75■□□□□ 0.27
PKNOX1P55347 COL23A1-202ENST00000407622 2329 ntAPPRIS ALT2 TSL 5 BASIC16.75■□□□□ 0.27
PKNOX1P55347 PRMT1-202ENST00000454376 1327 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
PKNOX1P55347 SMUG1-209ENST00000505128 2607 ntTSL 2 BASIC16.75■□□□□ 0.27
PKNOX1P55347 SYBU-231ENST00000533065 2645 ntAPPRIS ALT2 TSL 2 BASIC16.75■□□□□ 0.27
PKNOX1P55347 NF2-202ENST00000338641 6025 ntAPPRIS P4 TSL 1 (best) BASIC16.75■□□□□ 0.27
PKNOX1P55347 TRAF2-201ENST00000247668 2264 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
PKNOX1P55347 NKPD1-201ENST00000317951 4233 ntAPPRIS P1 TSL 2 BASIC16.75■□□□□ 0.27
PKNOX1P55347 DNM2-202ENST00000359692 3588 ntAPPRIS P5 TSL 1 (best) BASIC16.75■□□□□ 0.27
PKNOX1P55347 RAI2-206ENST00000545871 2421 ntAPPRIS P1 TSL 4 BASIC16.75■□□□□ 0.27
PKNOX1P55347 SYNDIG1L-202ENST00000554823 2420 ntAPPRIS P1 TSL 3 BASIC16.75■□□□□ 0.27
PKNOX1P55347 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC16.75■□□□□ 0.27
PKNOX1P55347 OVOL1-203ENST00000532448 1774 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
PKNOX1P55347 ARHGAP39-202ENST00000377307 4673 ntAPPRIS P3 TSL 5 BASIC16.75■□□□□ 0.27
PKNOX1P55347 NUTM2F-201ENST00000253262 2561 ntAPPRIS P2 TSL 1 (best) BASIC16.75■□□□□ 0.27
PKNOX1P55347 C11orf49-204ENST00000395460 1916 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
PKNOX1P55347 LINC01979-201ENST00000576738 5271 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
PKNOX1P55347 VOPP1-207ENST00000428648 2866 ntTSL 2 BASIC16.75■□□□□ 0.27
PKNOX1P55347 LINC00323-202ENST00000441268 2095 ntTSL 2 BASIC16.75■□□□□ 0.27
PKNOX1P55347 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
PKNOX1P55347 GPX4-201ENST00000354171 919 ntAPPRIS P2 TSL 1 (best) BASIC16.75■□□□□ 0.27
PKNOX1P55347 PSMB8-202ENST00000374882 1124 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
PKNOX1P55347 FXN-203ENST00000396366 922 ntTSL 2 BASIC16.75■□□□□ 0.27
PKNOX1P55347 GGT1-207ENST00000404532 853 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
PKNOX1P55347 PCAT7-201ENST00000452148 1164 ntTSL 2 BASIC16.75■□□□□ 0.27
PKNOX1P55347 AC079848.1-202ENST00000507924 444 ntTSL 3 BASIC16.75■□□□□ 0.27
PKNOX1P55347 AC139749.1-201ENST00000534584 1094 ntTSL 3 BASIC16.75■□□□□ 0.27
PKNOX1P55347 AP005901.3-202ENST00000581653 237 ntBASIC16.75■□□□□ 0.27
PKNOX1P55347 AC010632.1-201ENST00000590376 572 ntTSL 4 BASIC16.75■□□□□ 0.27
PKNOX1P55347 AC124016.1-202ENST00000609575 619 ntTSL 2 BASIC16.75■□□□□ 0.27
PKNOX1P55347 ARHGAP35-201ENST00000404338 8889 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
PKNOX1P55347 MCTP2-205ENST00000543482 1422 ntTSL 2 BASIC16.75■□□□□ 0.27
PKNOX1P55347 TTC8-216ENST00000614125 2377 ntTSL 5 BASIC16.75■□□□□ 0.27
PKNOX1P55347 CFC1B-203ENST00000620207 1444 ntTSL 5 BASIC16.75■□□□□ 0.27
PKNOX1P55347 CFC1-203ENST00000621673 1444 ntTSL 2 BASIC16.75■□□□□ 0.27
PKNOX1P55347 GGT6-203ENST00000573591 1730 ntTSL 4 BASIC16.75■□□□□ 0.27
PKNOX1P55347 SLCO5A1-203ENST00000524945 3725 ntTSL 2 BASIC16.75■□□□□ 0.27
PKNOX1P55347 AC104809.1-201ENST00000425110 2345 ntTSL 2 BASIC16.75■□□□□ 0.27
PKNOX1P55347 AQP8-201ENST00000219660 1359 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
PKNOX1P55347 ABHD14B-204ENST00000461108 1397 ntTSL 2 BASIC16.75■□□□□ 0.27
PKNOX1P55347 DMRTC2-204ENST00000596827 1675 ntTSL 2 BASIC16.75■□□□□ 0.27
PKNOX1P55347 ZNF799-201ENST00000419318 3036 ntTSL 2 BASIC16.75■□□□□ 0.27
PKNOX1P55347 DLG4-202ENST00000399506 3185 ntAPPRIS ALT1 TSL 2 BASIC16.75■□□□□ 0.27
PKNOX1P55347 TMC7-201ENST00000304381 3640 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
PKNOX1P55347 CRY1-201ENST00000008527 3267 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
PKNOX1P55347 B4GALNT2-201ENST00000300404 1906 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.27
PKNOX1P55347 SELENBP1-204ENST00000426705 1928 ntTSL 2 BASIC16.74■□□□□ 0.27
PKNOX1P55347 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
PKNOX1P55347 LGMN-216ENST00000557434 1797 ntTSL 5 BASIC16.74■□□□□ 0.27
PKNOX1P55347 KL-201ENST00000380099 5006 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
PKNOX1P55347 INO80E-201ENST00000304516 1489 ntTSL 2 BASIC16.74■□□□□ 0.27
PKNOX1P55347 APOA4-201ENST00000357780 1473 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
PKNOX1P55347 GPR89P-201ENST00000407924 1495 ntBASIC16.74■□□□□ 0.27
PKNOX1P55347 TP73-AS1-210ENST00000637775 1455 ntBASIC16.74■□□□□ 0.27
PKNOX1P55347 FAM83G-201ENST00000345041 2929 ntAPPRIS P1 TSL 5 BASIC16.74■□□□□ 0.27
PKNOX1P55347 ZFP28-201ENST00000301318 4096 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
PKNOX1P55347 EDN3-205ENST00000395654 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
PKNOX1P55347 AC092068.3-201ENST00000587894 2016 ntBASIC16.74■□□□□ 0.27
PKNOX1P55347 DDX42-208ENST00000578681 4337 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
PKNOX1P55347 RAP2C-201ENST00000342983 3896 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
PKNOX1P55347 PCDHA13-202ENST00000409494 4884 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
PKNOX1P55347 SENP1-204ENST00000549518 2260 ntAPPRIS P2 TSL 1 (best) BASIC16.74■□□□□ 0.27
PKNOX1P55347 BEX4-201ENST00000372691 1066 ntAPPRIS P1 TSL 2 BASIC16.74■□□□□ 0.27
PKNOX1P55347 ZNF32-201ENST00000374433 1137 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
PKNOX1P55347 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC16.74■□□□□ 0.27
PKNOX1P55347 RPS14-203ENST00000407193 784 ntAPPRIS P1 TSL 2 BASIC16.74■□□□□ 0.27
PKNOX1P55347 NKTR-203ENST00000442970 646 ntTSL 2 BASIC16.74■□□□□ 0.27
PKNOX1P55347 AP006284.1-202ENST00000527113 527 ntTSL 4 BASIC16.74■□□□□ 0.27
PKNOX1P55347 AC015712.1-203ENST00000559331 593 ntTSL 3 BASIC16.74■□□□□ 0.27
PKNOX1P55347 MAP3K14-AS1-202ENST00000585351 893 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
PKNOX1P55347 AC020911.2-202ENST00000588945 593 ntTSL 3 BASIC16.74■□□□□ 0.27
PKNOX1P55347 IGFLR1-209ENST00000592537 1195 ntAPPRIS P2 TSL 1 (best) BASIC16.74■□□□□ 0.27
PKNOX1P55347 AC010463.1-201ENST00000596542 1207 ntAPPRIS P1 TSL 2 BASIC16.74■□□□□ 0.27
PKNOX1P55347 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC16.74■□□□□ 0.27
PKNOX1P55347 AC073592.5-201ENST00000624854 528 ntBASIC16.74■□□□□ 0.27
PKNOX1P55347 HSP90B1-211ENST00000640977 1127 ntTSL 5 BASIC16.74■□□□□ 0.27
PKNOX1P55347 RELT-201ENST00000064780 3535 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
PKNOX1P55347 LTBP4-205ENST00000396819 4764 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
PKNOX1P55347 QRICH1-201ENST00000357496 3083 ntAPPRIS P1 TSL 2 BASIC16.74■□□□□ 0.27
PKNOX1P55347 CEACAM21-203ENST00000407170 1691 ntTSL 2 BASIC16.74■□□□□ 0.27
PKNOX1P55347 AC126755.2-202ENST00000427999 1547 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
PKNOX1P55347 THSD1-202ENST00000349258 3189 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
PKNOX1P55347 TICAM2-201ENST00000427199 3049 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
PKNOX1P55347 AC233702.3-201ENST00000578656 1387 ntBASIC16.74■□□□□ 0.27
PKNOX1P55347 FAM104A-202ENST00000405159 2865 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
PKNOX1P55347 CXorf58-201ENST00000379211 1752 ntAPPRIS P2 TSL 1 (best) BASIC16.74■□□□□ 0.27
PKNOX1P55347 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
PKNOX1P55347 PPP1CB-202ENST00000358506 4771 ntAPPRIS P1 TSL 5 BASIC16.74■□□□□ 0.27
PKNOX1P55347 CHID1-203ENST00000436108 1477 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
PKNOX1P55347 BANP-204ENST00000393208 2283 ntTSL 2 BASIC16.73■□□□□ 0.27
PKNOX1P55347 AL031282.2-201ENST00000598846 5079 ntTSL 2 BASIC16.73■□□□□ 0.27
PKNOX1P55347 PLIN1-202ENST00000430628 2900 ntAPPRIS P1 TSL 5 BASIC16.73■□□□□ 0.27
PKNOX1P55347 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC16.73■□□□□ 0.27
PKNOX1P55347 CTDSP2-201ENST00000398073 4795 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 27.6 ms