Protein–RNA interactions for Protein: P40939

HADHA, Trifunctional enzyme subunit alpha, mitochondrial, humanhuman

Predictions only

Length 763 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HADHAP40939 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
HADHAP40939 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
HADHAP40939 SAXO2-206ENST00000566205 340 ntAPPRIS ALT2 TSL 2 BASIC17.26■□□□□ 0.35
HADHAP40939 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
HADHAP40939 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
HADHAP40939 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
HADHAP40939 AL365277.1-202ENST00000331856 2241 ntTSL 2 BASIC17.26■□□□□ 0.35
HADHAP40939 SLC18B1-201ENST00000275227 2368 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
HADHAP40939 MIB2-232ENST00000520777 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
HADHAP40939 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
HADHAP40939 EIF4H-202ENST00000353999 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC17.26■□□□□ 0.35
HADHAP40939 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
HADHAP40939 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC17.26■□□□□ 0.35
HADHAP40939 ZNF414-202ENST00000393927 2300 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
HADHAP40939 PJA1-201ENST00000361478 2755 ntAPPRIS P4 TSL 1 (best) BASIC17.26■□□□□ 0.35
HADHAP40939 PIGF-201ENST00000281382 1372 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
HADHAP40939 LMBR1-202ENST00000359422 4727 ntTSL 5 BASIC17.26■□□□□ 0.35
HADHAP40939 MIER1-204ENST00000371012 2420 ntTSL 2 BASIC17.26■□□□□ 0.35
HADHAP40939 ZFYVE28-208ENST00000511071 3273 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
HADHAP40939 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC17.25■□□□□ 0.35
HADHAP40939 DCST1-202ENST00000368419 2207 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
HADHAP40939 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
HADHAP40939 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
HADHAP40939 TDRD7-201ENST00000355295 3834 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
HADHAP40939 FSCN1-201ENST00000382361 2777 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
HADHAP40939 ARL13B-203ENST00000394222 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
HADHAP40939 FAM83A-202ENST00000518448 5393 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
HADHAP40939 SLC10A3-203ENST00000393586 1893 ntTSL 5 BASIC17.25■□□□□ 0.35
HADHAP40939 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
HADHAP40939 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC17.25■□□□□ 0.35
HADHAP40939 NCF1C-201ENST00000438382 1427 ntBASIC17.25■□□□□ 0.35
HADHAP40939 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC17.25■□□□□ 0.35
HADHAP40939 DFNA5-207ENST00000419307 2265 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
HADHAP40939 AKR1C7P-201ENST00000305623 895 ntBASIC17.25■□□□□ 0.35
HADHAP40939 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
HADHAP40939 BX005266.1-201ENST00000473402 457 ntBASIC17.25■□□□□ 0.35
HADHAP40939 MCCC2-205ENST00000509358 1214 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
HADHAP40939 AC034243.1-201ENST00000520838 587 ntTSL 2 BASIC17.25■□□□□ 0.35
HADHAP40939 MSRA-206ENST00000521209 814 ntTSL 3 BASIC17.25■□□□□ 0.35
HADHAP40939 FGFR1OP2-206ENST00000546072 956 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
HADHAP40939 BMF-207ENST00000559701 630 ntTSL 3 BASIC17.25■□□□□ 0.35
HADHAP40939 CYB561-217ENST00000582997 877 ntTSL 5 BASIC17.25■□□□□ 0.35
HADHAP40939 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC17.25■□□□□ 0.35
HADHAP40939 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC17.25■□□□□ 0.35
HADHAP40939 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC17.25■□□□□ 0.35
HADHAP40939 AC132872.3-201ENST00000620937 629 ntTSL 5 BASIC17.25■□□□□ 0.35
HADHAP40939 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
HADHAP40939 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
HADHAP40939 JAK3-201ENST00000458235 5432 ntAPPRIS P2 TSL 5 BASIC17.25■□□□□ 0.35
HADHAP40939 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC17.25■□□□□ 0.35
HADHAP40939 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
HADHAP40939 CYP2U1-202ENST00000508453 3125 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
HADHAP40939 DPEP3-201ENST00000268793 2018 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
HADHAP40939 C12orf56-207ENST00000543942 3242 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
HADHAP40939 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
HADHAP40939 AC004817.3-201ENST00000602957 2129 ntBASIC17.24■□□□□ 0.35
HADHAP40939 SLC8B1-210ENST00000550047 2493 ntTSL 2 BASIC17.24■□□□□ 0.35
HADHAP40939 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
HADHAP40939 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC17.24■□□□□ 0.35
HADHAP40939 SSR4-201ENST00000320857 1671 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
HADHAP40939 SLC39A7-202ENST00000374677 2409 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
HADHAP40939 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
HADHAP40939 COLEC11-202ENST00000349077 1259 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
HADHAP40939 AP2S1-202ENST00000352203 793 ntTSL 2 BASIC17.24■□□□□ 0.35
HADHAP40939 CREM-211ENST00000374726 1207 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
HADHAP40939 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
HADHAP40939 MPG-203ENST00000397817 1039 ntAPPRIS ALT2 TSL 2 BASIC17.24■□□□□ 0.35
HADHAP40939 HIST2H3DP1-201ENST00000401004 416 ntBASIC17.24■□□□□ 0.35
HADHAP40939 AC026396.1-201ENST00000419388 421 ntBASIC17.24■□□□□ 0.35
HADHAP40939 TM4SF19-TCTEX1D2-201ENST00000442633 964 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
HADHAP40939 AF238378.1-201ENST00000526806 358 ntBASIC17.24■□□□□ 0.35
HADHAP40939 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
HADHAP40939 AP2S1-204ENST00000597020 707 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
HADHAP40939 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
HADHAP40939 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC17.24■□□□□ 0.35
HADHAP40939 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
HADHAP40939 RAI1-207ENST00000640861 5172 ntTSL 5 BASIC17.24■□□□□ 0.35
HADHAP40939 RGN-202ENST00000352078 1611 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
HADHAP40939 DPEP1-203ENST00000421184 1647 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
HADHAP40939 GPBAR1-201ENST00000479077 1869 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
HADHAP40939 NFATC1-208ENST00000586434 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
HADHAP40939 ZC3H7B-201ENST00000352645 5909 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
HADHAP40939 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
HADHAP40939 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC17.24■□□□□ 0.35
HADHAP40939 SLC2A14-202ENST00000396589 2335 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
HADHAP40939 PAPD5-202ENST00000436909 4635 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
HADHAP40939 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC17.23■□□□□ 0.35
HADHAP40939 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
HADHAP40939 PRMT1-202ENST00000454376 1327 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
HADHAP40939 GBGT1-204ENST00000372043 1935 ntTSL 2 BASIC17.23■□□□□ 0.35
HADHAP40939 RDH13-223ENST00000610356 1931 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
HADHAP40939 LMNB2-201ENST00000325327 4671 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
HADHAP40939 PEX10-201ENST00000288774 2871 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
HADHAP40939 EXD3-201ENST00000340951 2872 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
HADHAP40939 TMEM37-201ENST00000306406 1688 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
HADHAP40939 LMF1-201ENST00000262301 2621 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
HADHAP40939 HSPA1A-201ENST00000375651 2483 ntAPPRIS P1 BASIC17.23■□□□□ 0.35
HADHAP40939 TLE3-205ENST00000539550 2464 ntTSL 2 BASIC17.23■□□□□ 0.35
HADHAP40939 KCNMA1-201ENST00000286627 6194 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
HADHAP40939 GABRB2-202ENST00000353437 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 24.6 ms