Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 AC106017.2-201ENST00000631194 1173 ntTSL 2 BASIC19.79■□□□□ 0.76
SCN4AP35499 PLA2G16-206ENST00000639271 957 ntTSL 5 BASIC19.79■□□□□ 0.76
SCN4AP35499 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
SCN4AP35499 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
SCN4AP35499 MYC-201ENST00000259523 2042 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
SCN4AP35499 PDIA3P1-201ENST00000471856 1510 ntBASIC19.79■□□□□ 0.76
SCN4AP35499 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
SCN4AP35499 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
SCN4AP35499 ELP4-219ENST00000639878 1583 ntTSL 5 BASIC19.79■□□□□ 0.76
SCN4AP35499 AURKA-202ENST00000347343 2248 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
SCN4AP35499 POLD4-201ENST00000312419 918 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
SCN4AP35499 C2orf76-202ENST00000409466 1150 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
SCN4AP35499 ESPNP-202ENST00000414828 571 ntTSL 3 BASIC19.79■□□□□ 0.76
SCN4AP35499 DIRC3-201ENST00000423123 552 ntAPPRIS P1 TSL 4 BASIC19.79■□□□□ 0.76
SCN4AP35499 FAM197Y5-201ENST00000423213 765 ntTSL 5 BASIC19.79■□□□□ 0.76
SCN4AP35499 APOA1-AS-201ENST00000444200 563 ntTSL 4 BASIC19.79■□□□□ 0.76
SCN4AP35499 SYNPR-202ENST00000450542 1004 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
SCN4AP35499 TPI1-206ENST00000488464 791 ntTSL 5 BASIC19.79■□□□□ 0.76
SCN4AP35499 AC006064.3-201ENST00000537921 477 ntTSL 4 BASIC19.79■□□□□ 0.76
SCN4AP35499 AL163974.1-201ENST00000554540 466 ntTSL 5 BASIC19.79■□□□□ 0.76
SCN4AP35499 C17orf62-239ENST00000585080 741 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
SCN4AP35499 AL139099.5-201ENST00000635274 300 ntBASIC19.79■□□□□ 0.76
SCN4AP35499 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC19.78■□□□□ 0.76
SCN4AP35499 HACD3-202ENST00000442729 1332 ntTSL 2 BASIC19.78■□□□□ 0.76
SCN4AP35499 WIZP1-201ENST00000531444 2299 ntBASIC19.78■□□□□ 0.76
SCN4AP35499 FAHD2B-202ENST00000414820 1388 ntAPPRIS P1 TSL 5 BASIC19.78■□□□□ 0.76
SCN4AP35499 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC19.78■□□□□ 0.76
SCN4AP35499 ARMC6-202ENST00000392335 2383 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
SCN4AP35499 TOM1L2-209ENST00000540946 1420 ntTSL 2 BASIC19.78■□□□□ 0.76
SCN4AP35499 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC19.78■□□□□ 0.76
SCN4AP35499 CLCNKB-204ENST00000619181 1544 ntTSL 5 BASIC19.78■□□□□ 0.76
SCN4AP35499 OGG1-206ENST00000349503 1950 ntTSL 5 BASIC19.78■□□□□ 0.76
SCN4AP35499 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC19.78■□□□□ 0.76
SCN4AP35499 AK1-203ENST00000373176 2266 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
SCN4AP35499 DDIT4L-201ENST00000273990 2604 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
SCN4AP35499 STX1A-203ENST00000395155 783 ntTSL 2 BASIC19.78■□□□□ 0.76
SCN4AP35499 P3H2-AS1-201ENST00000412203 730 ntTSL 5 BASIC19.78■□□□□ 0.76
SCN4AP35499 BMP7-AS1-201ENST00000445956 436 ntTSL 2 BASIC19.78■□□□□ 0.76
SCN4AP35499 PRSS42-202ENST00000447340 1280 ntTSL 2 BASIC19.78■□□□□ 0.76
SCN4AP35499 RCAN1-212ENST00000492600 935 ntTSL 2 BASIC19.78■□□□□ 0.76
SCN4AP35499 AC108725.1-201ENST00000495472 409 ntBASIC19.78■□□□□ 0.76
SCN4AP35499 SMIM22-202ENST00000586440 549 ntAPPRIS P4 TSL 1 (best) BASIC19.78■□□□□ 0.76
SCN4AP35499 TMEM120A-201ENST00000417509 1444 ntTSL 2 BASIC19.78■□□□□ 0.76
SCN4AP35499 KRT8P49-201ENST00000604166 1432 ntBASIC19.78■□□□□ 0.76
SCN4AP35499 FKBP6-202ENST00000413573 1507 ntTSL 5 BASIC19.78■□□□□ 0.76
SCN4AP35499 MARCH2-208ENST00000602117 1667 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
SCN4AP35499 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
SCN4AP35499 MTFR2-203ENST00000420702 1793 ntAPPRIS P2 TSL 2 BASIC19.78■□□□□ 0.76
SCN4AP35499 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
SCN4AP35499 FDFT1-226ENST00000623368 2368 ntTSL 2 BASIC19.77■□□□□ 0.76
SCN4AP35499 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
SCN4AP35499 MCM3AP-AS1-202ENST00000420074 1947 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
SCN4AP35499 TRIM50-202ENST00000453152 1599 ntAPPRIS P1 TSL 2 BASIC19.77■□□□□ 0.76
SCN4AP35499 SMIM10-201ENST00000330288 1536 ntAPPRIS P1 BASIC19.77■□□□□ 0.76
SCN4AP35499 CLK3P2-201ENST00000427566 1453 ntBASIC19.77■□□□□ 0.76
SCN4AP35499 NCAPH2-202ENST00000395698 1388 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
SCN4AP35499 RPLP2-201ENST00000321153 781 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
SCN4AP35499 UCHL3-201ENST00000377595 844 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
SCN4AP35499 TEX26-AS1-201ENST00000411835 1203 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
SCN4AP35499 RHBDL2-203ENST00000540558 697 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
SCN4AP35499 AC013565.3-201ENST00000565547 450 ntTSL 3 BASIC19.77■□□□□ 0.76
SCN4AP35499 AC009134.1-201ENST00000571939 443 ntTSL 3 BASIC19.77■□□□□ 0.76
SCN4AP35499 NAA38-207ENST00000576861 556 ntTSL 3 BASIC19.77■□□□□ 0.76
SCN4AP35499 SNAP25-AS1-208ENST00000605592 556 ntTSL 5 BASIC19.77■□□□□ 0.76
SCN4AP35499 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
SCN4AP35499 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC19.77■□□□□ 0.76
SCN4AP35499 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
SCN4AP35499 ENTPD2-202ENST00000355097 2095 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
SCN4AP35499 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC19.77■□□□□ 0.75
SCN4AP35499 IMPDH1P4-201ENST00000445028 1534 ntBASIC19.77■□□□□ 0.75
SCN4AP35499 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC19.77■□□□□ 0.75
SCN4AP35499 AL021920.2-201ENST00000624828 1351 ntBASIC19.77■□□□□ 0.75
SCN4AP35499 CLDND1-204ENST00000394185 2159 ntAPPRIS P1 TSL 5 BASIC19.76■□□□□ 0.75
SCN4AP35499 OR10H1-201ENST00000334920 1124 ntAPPRIS P1 BASIC19.76■□□□□ 0.75
SCN4AP35499 SPEG-202ENST00000396686 1086 ntTSL 3 BASIC19.76■□□□□ 0.75
SCN4AP35499 BRWD1P1-201ENST00000401091 371 ntBASIC19.76■□□□□ 0.75
SCN4AP35499 HIST2H2BA-202ENST00000430394 752 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
SCN4AP35499 GEMIN4-202ENST00000437269 1182 ntTSL 2 BASIC19.76■□□□□ 0.75
SCN4AP35499 AC098859.1-201ENST00000502915 1238 ntBASIC19.76■□□□□ 0.75
SCN4AP35499 AC000032.1-201ENST00000562538 491 ntTSL 2 BASIC19.76■□□□□ 0.75
SCN4AP35499 TMEM97-205ENST00000583381 578 ntTSL 4 BASIC19.76■□□□□ 0.75
SCN4AP35499 NOP53-AS1-201ENST00000602048 540 ntTSL 4 BASIC19.76■□□□□ 0.75
SCN4AP35499 AL033527.5-202ENST00000641632 1098 ntBASIC19.76■□□□□ 0.75
SCN4AP35499 TNXA-203ENST00000507684 2038 ntBASIC19.76■□□□□ 0.75
SCN4AP35499 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC19.76■□□□□ 0.75
SCN4AP35499 HIST1H2AC-202ENST00000377791 1654 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
SCN4AP35499 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC19.76■□□□□ 0.75
SCN4AP35499 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
SCN4AP35499 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
SCN4AP35499 FOLH1-204ENST00000356696 2403 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
SCN4AP35499 OSTF1-201ENST00000346234 1319 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
SCN4AP35499 POLR2I-201ENST00000221859 913 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
SCN4AP35499 NSL1-201ENST00000366976 722 ntTSL 2 BASIC19.76■□□□□ 0.75
SCN4AP35499 S100A16-201ENST00000368703 946 ntAPPRIS P1 TSL 3 BASIC19.76■□□□□ 0.75
SCN4AP35499 NTMT1-202ENST00000372481 741 ntTSL 2 BASIC19.76■□□□□ 0.75
SCN4AP35499 AC092506.1-202ENST00000401022 528 ntBASIC19.76■□□□□ 0.75
SCN4AP35499 MORN2-204ENST00000409665 648 ntAPPRIS P1 TSL 5 BASIC19.76■□□□□ 0.75
SCN4AP35499 GNLY-210ENST00000524600 750 ntAPPRIS ALT2 TSL 2 BASIC19.76■□□□□ 0.75
SCN4AP35499 AC136475.5-202ENST00000524824 587 ntTSL 4 BASIC19.76■□□□□ 0.75
SCN4AP35499 AC005833.2-201ENST00000527518 1249 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 63.7 ms