Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC14.83□□□□□ -0.04
COL8A1P27658 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC14.83□□□□□ -0.04
COL8A1P27658 LINC00094-205ENST00000603928 5722 ntAPPRIS ALT2 TSL 2 BASIC14.83□□□□□ -0.04
COL8A1P27658 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
COL8A1P27658 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
COL8A1P27658 HPSE-207ENST00000513463 1458 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
COL8A1P27658 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC14.82□□□□□ -0.04
COL8A1P27658 MTG1-201ENST00000317502 1560 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
COL8A1P27658 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
COL8A1P27658 DUSP4-201ENST00000240100 5537 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
COL8A1P27658 NPM2-202ENST00000381530 925 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
COL8A1P27658 ITGB2-204ENST00000397846 422 ntTSL 2 BASIC14.82□□□□□ -0.04
COL8A1P27658 LRP5L-201ENST00000402785 1193 ntAPPRIS P2 TSL 1 (best) BASIC14.82□□□□□ -0.04
COL8A1P27658 AL031587.1-201ENST00000410099 1055 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
COL8A1P27658 MPZL1-209ENST00000474859 630 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
COL8A1P27658 LINC02437-201ENST00000505053 911 ntTSL 3 BASIC14.82□□□□□ -0.04
COL8A1P27658 AGGF1-204ENST00000506806 1142 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
COL8A1P27658 REEP4-207ENST00000523293 913 ntTSL 3 BASIC14.82□□□□□ -0.04
COL8A1P27658 AL139349.1-201ENST00000530479 577 ntTSL 4 BASIC14.82□□□□□ -0.04
COL8A1P27658 AC034102.5-201ENST00000548731 540 ntTSL 4 BASIC14.82□□□□□ -0.04
COL8A1P27658 THTPA-204ENST00000554970 569 ntTSL 4 BASIC14.82□□□□□ -0.04
COL8A1P27658 THTPA-206ENST00000556015 535 ntTSL 3 BASIC14.82□□□□□ -0.04
COL8A1P27658 IFT20-214ENST00000585089 1071 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
COL8A1P27658 COQ4-205ENST00000609948 956 ntTSL 2 BASIC14.82□□□□□ -0.04
COL8A1P27658 AC012183.1-201ENST00000625197 499 ntBASIC14.82□□□□□ -0.04
COL8A1P27658 EI24-214ENST00000620753 1718 ntAPPRIS P1 TSL 5 BASIC14.82□□□□□ -0.04
COL8A1P27658 ZNF623-203ENST00000526926 2612 ntAPPRIS ALT2 TSL 2 BASIC14.82□□□□□ -0.04
COL8A1P27658 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC14.82□□□□□ -0.04
COL8A1P27658 GPX3-210ENST00000622181 1757 ntAPPRIS ALT1 TSL 5 BASIC14.82□□□□□ -0.04
COL8A1P27658 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
COL8A1P27658 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
COL8A1P27658 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC14.82□□□□□ -0.04
COL8A1P27658 TSPAN3-201ENST00000267970 6467 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
COL8A1P27658 AC093677.2-201ENST00000600169 1863 ntBASIC14.82□□□□□ -0.04
COL8A1P27658 PHRF1-202ENST00000413872 5224 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
COL8A1P27658 MCCC1-214ENST00000610757 2410 ntTSL 5 BASIC14.82□□□□□ -0.04
COL8A1P27658 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC14.82□□□□□ -0.04
COL8A1P27658 BAIAP2-204ENST00000428708 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
COL8A1P27658 CASZ1-202ENST00000377022 7936 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
COL8A1P27658 FANCA-203ENST00000389302 1641 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
COL8A1P27658 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC14.81□□□□□ -0.04
COL8A1P27658 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC14.81□□□□□ -0.04
COL8A1P27658 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
COL8A1P27658 TRPM2-208ENST00000621064 1669 ntTSL 5 BASIC14.81□□□□□ -0.04
COL8A1P27658 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC14.81□□□□□ -0.04
COL8A1P27658 NLGN2-201ENST00000302926 4642 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
COL8A1P27658 HARS-201ENST00000307633 1780 ntTSL 2 BASIC14.81□□□□□ -0.04
COL8A1P27658 APLNR-203ENST00000611099 1789 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
COL8A1P27658 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC14.81□□□□□ -0.04
COL8A1P27658 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
COL8A1P27658 BACE1-201ENST00000313005 6326 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
COL8A1P27658 TJP1-212ENST00000614355 6977 ntAPPRIS ALT2 TSL 5 BASIC14.81□□□□□ -0.04
COL8A1P27658 HFE-208ENST00000397022 1280 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
COL8A1P27658 CC2D2B-203ENST00000423344 1241 ntTSL 2 BASIC14.81□□□□□ -0.04
COL8A1P27658 ACTG1P4-201ENST00000425123 1122 ntBASIC14.81□□□□□ -0.04
COL8A1P27658 FAM25G-201ENST00000452267 345 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
COL8A1P27658 HFE-214ENST00000488199 781 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
COL8A1P27658 AC106872.10-201ENST00000503778 747 ntTSL 3 BASIC14.81□□□□□ -0.04
COL8A1P27658 AC009902.2-201ENST00000518880 620 ntTSL 4 BASIC14.81□□□□□ -0.04
COL8A1P27658 SCN4B-204ENST00000529878 566 ntTSL 4 BASIC14.81□□□□□ -0.04
COL8A1P27658 API5-211ENST00000534695 560 ntTSL 5 BASIC14.81□□□□□ -0.04
COL8A1P27658 KRT17P8-201ENST00000540749 863 ntBASIC14.81□□□□□ -0.04
COL8A1P27658 MIR4525-201ENST00000580000 75 ntBASIC14.81□□□□□ -0.04
COL8A1P27658 AL162274.1-201ENST00000617191 1098 ntBASIC14.81□□□□□ -0.04
COL8A1P27658 GAREM2-202ENST00000407684 5138 ntTSL 2 BASIC14.81□□□□□ -0.04
COL8A1P27658 NOMO2-202ENST00000381474 3911 ntAPPRIS ALT2 TSL 5 BASIC14.81□□□□□ -0.04
COL8A1P27658 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
COL8A1P27658 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
COL8A1P27658 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC14.81□□□□□ -0.04
COL8A1P27658 SARDH-202ENST00000371867 1326 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
COL8A1P27658 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC14.81□□□□□ -0.04
COL8A1P27658 RAI2-203ENST00000415486 2037 ntTSL 2 BASIC14.81□□□□□ -0.04
COL8A1P27658 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
COL8A1P27658 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC14.81□□□□□ -0.04
COL8A1P27658 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC14.81□□□□□ -0.04
COL8A1P27658 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC14.81□□□□□ -0.04
COL8A1P27658 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC14.81□□□□□ -0.04
COL8A1P27658 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
COL8A1P27658 LTA-214ENST00000454783 1507 ntAPPRIS P1 TSL 2 BASIC14.81□□□□□ -0.04
COL8A1P27658 REXO1L6P-201ENST00000603433 1515 ntBASIC14.81□□□□□ -0.04
COL8A1P27658 RGN-202ENST00000352078 1611 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
COL8A1P27658 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
COL8A1P27658 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
COL8A1P27658 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC14.8□□□□□ -0.04
COL8A1P27658 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC14.8□□□□□ -0.04
COL8A1P27658 ARID1A-205ENST00000457599 6268 ntAPPRIS ALT2 TSL 5 BASIC14.8□□□□□ -0.04
COL8A1P27658 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC14.8□□□□□ -0.04
COL8A1P27658 PTPRU-202ENST00000373779 5579 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
COL8A1P27658 ADAM15-207ENST00000368413 1901 ntTSL 5 BASIC14.8□□□□□ -0.04
COL8A1P27658 ADORA1-202ENST00000337894 2919 ntAPPRIS P1 TSL 2 BASIC14.8□□□□□ -0.04
COL8A1P27658 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
COL8A1P27658 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC14.8□□□□□ -0.04
COL8A1P27658 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
COL8A1P27658 PLA2G12A-201ENST00000243501 5226 ntAPPRIS P2 TSL 1 (best) BASIC14.8□□□□□ -0.04
COL8A1P27658 COBL-201ENST00000265136 5291 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
COL8A1P27658 TRIM9-201ENST00000298355 5284 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
COL8A1P27658 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC14.8□□□□□ -0.04
COL8A1P27658 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC14.8□□□□□ -0.04
COL8A1P27658 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC14.8□□□□□ -0.04
COL8A1P27658 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC14.8□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 88 ms