Protein–RNA interactions for Protein: P20036

HLA-DPA1, HLA class II histocompatibility antigen, DP alpha 1 chain, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DPA1P20036 CABP1-201ENST00000288616 1369 ntAPPRIS P4 TSL 1 (best) BASIC17.2■□□□□ 0.34
HLA-DPA1P20036 FGFBP1-201ENST00000382333 1359 ntAPPRIS P1 TSL 3 BASIC17.2■□□□□ 0.34
HLA-DPA1P20036 MOCS1-206ENST00000425303 1920 ntTSL 2 BASIC17.2■□□□□ 0.34
HLA-DPA1P20036 TMEM234-202ENST00000344461 721 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
HLA-DPA1P20036 FIGNL1-207ENST00000435566 593 ntTSL 4 BASIC17.2■□□□□ 0.34
HLA-DPA1P20036 DHRS12-203ENST00000444610 1162 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
HLA-DPA1P20036 PAWRP1-201ENST00000451083 565 ntBASIC17.2■□□□□ 0.34
HLA-DPA1P20036 TCTN1-208ENST00000471804 718 ntTSL 3 BASIC17.2■□□□□ 0.34
HLA-DPA1P20036 AP000688.1-201ENST00000535199 1221 ntTSL 2 BASIC17.2■□□□□ 0.34
HLA-DPA1P20036 DUX4L17-201ENST00000557360 1267 ntBASIC17.2■□□□□ 0.34
HLA-DPA1P20036 ETFA-208ENST00000559602 792 ntTSL 3 BASIC17.2■□□□□ 0.34
HLA-DPA1P20036 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC17.2■□□□□ 0.34
HLA-DPA1P20036 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC17.2■□□□□ 0.34
HLA-DPA1P20036 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
HLA-DPA1P20036 ANO2-212ENST00000612575 1087 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
HLA-DPA1P20036 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC17.2■□□□□ 0.34
HLA-DPA1P20036 GDA-201ENST00000238018 2074 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
HLA-DPA1P20036 SH3RF1-201ENST00000284637 5272 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
HLA-DPA1P20036 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
HLA-DPA1P20036 NRXN1-204ENST00000401669 5870 ntAPPRIS ALT1 TSL 5 BASIC17.2■□□□□ 0.34
HLA-DPA1P20036 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC17.2■□□□□ 0.34
HLA-DPA1P20036 KDM4B-211ENST00000611640 5703 ntTSL 5 BASIC17.2■□□□□ 0.34
HLA-DPA1P20036 C14orf93-205ENST00000397379 1949 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
HLA-DPA1P20036 LINC01569-202ENST00000573042 2093 ntTSL 2 BASIC17.19■□□□□ 0.34
HLA-DPA1P20036 NAA50-209ENST00000497525 1385 ntTSL 2 BASIC17.19■□□□□ 0.34
HLA-DPA1P20036 AL021920.2-201ENST00000624828 1351 ntBASIC17.19■□□□□ 0.34
HLA-DPA1P20036 ZC3H7B-201ENST00000352645 5909 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
HLA-DPA1P20036 SEPHS2-201ENST00000478753 2551 ntAPPRIS P1 BASIC17.19■□□□□ 0.34
HLA-DPA1P20036 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
HLA-DPA1P20036 CLN5-208ENST00000636183 6664 ntAPPRIS P2 TSL 1 (best) BASIC17.19■□□□□ 0.34
HLA-DPA1P20036 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
HLA-DPA1P20036 DCTN3-201ENST00000259632 808 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
HLA-DPA1P20036 NDUFA11-201ENST00000308961 539 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
HLA-DPA1P20036 AC073621.1-201ENST00000392730 636 ntBASIC17.19■□□□□ 0.34
HLA-DPA1P20036 PTCHD3P3-201ENST00000403073 906 ntBASIC17.19■□□□□ 0.34
HLA-DPA1P20036 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC17.19■□□□□ 0.34
HLA-DPA1P20036 PPIE-208ENST00000470213 927 ntTSL 3 BASIC17.19■□□□□ 0.34
HLA-DPA1P20036 CUTA-210ENST00000488034 769 ntAPPRIS ALT1 TSL 2 BASIC17.19■□□□□ 0.34
HLA-DPA1P20036 AC136632.2-201ENST00000512891 861 ntBASIC17.19■□□□□ 0.34
HLA-DPA1P20036 AP002469.2-201ENST00000531724 424 ntBASIC17.19■□□□□ 0.34
HLA-DPA1P20036 AL160237.2-201ENST00000556165 472 ntBASIC17.19■□□□□ 0.34
HLA-DPA1P20036 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC17.19■□□□□ 0.34
HLA-DPA1P20036 AC036176.1-201ENST00000589905 785 ntTSL 2 BASIC17.19■□□□□ 0.34
HLA-DPA1P20036 AC104692.2-201ENST00000603054 253 ntBASIC17.19■□□□□ 0.34
HLA-DPA1P20036 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC17.19■□□□□ 0.34
HLA-DPA1P20036 AC092902.2-205ENST00000622381 394 ntTSL 5 BASIC17.19■□□□□ 0.34
HLA-DPA1P20036 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
HLA-DPA1P20036 SYNGAP1-202ENST00000418600 5828 ntTSL 5 BASIC17.19■□□□□ 0.34
HLA-DPA1P20036 AC005915.1-201ENST00000624912 2018 ntBASIC17.19■□□□□ 0.34
HLA-DPA1P20036 PTP4A3-201ENST00000329397 2785 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
HLA-DPA1P20036 JPH2-202ENST00000372980 4787 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
HLA-DPA1P20036 HYAL3-201ENST00000336307 1942 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
HLA-DPA1P20036 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
HLA-DPA1P20036 NOMO2-211ENST00000621364 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
HLA-DPA1P20036 EIF2AK4-201ENST00000263791 5499 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
HLA-DPA1P20036 TMEM237-213ENST00000621467 1824 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
HLA-DPA1P20036 BICD1-205ENST00000550207 1328 ntTSL 3 BASIC17.19■□□□□ 0.34
HLA-DPA1P20036 GALNT11-205ENST00000430044 2727 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
HLA-DPA1P20036 ASIC3-203ENST00000357922 2232 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
HLA-DPA1P20036 EVA1A-205ENST00000410113 1747 ntAPPRIS P2 TSL 3 BASIC17.18■□□□□ 0.34
HLA-DPA1P20036 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC17.18■□□□□ 0.34
HLA-DPA1P20036 FOS-208ENST00000555686 1496 ntTSL 2 BASIC17.18■□□□□ 0.34
HLA-DPA1P20036 ALOX12-201ENST00000251535 2358 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
HLA-DPA1P20036 RAB23-202ENST00000468148 4837 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
HLA-DPA1P20036 PRCC-201ENST00000271526 2105 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
HLA-DPA1P20036 TTLL10-201ENST00000379288 2114 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
HLA-DPA1P20036 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
HLA-DPA1P20036 SYTL3-202ENST00000360448 2504 ntAPPRIS ALT1 TSL 5 BASIC17.18■□□□□ 0.34
HLA-DPA1P20036 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
HLA-DPA1P20036 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
HLA-DPA1P20036 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
HLA-DPA1P20036 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
HLA-DPA1P20036 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC17.18■□□□□ 0.34
HLA-DPA1P20036 GALNT17-201ENST00000333538 3884 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
HLA-DPA1P20036 ZNF140-210ENST00000544426 2340 ntTSL 2 BASIC17.18■□□□□ 0.34
HLA-DPA1P20036 SLC12A5-201ENST00000243964 6061 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
HLA-DPA1P20036 FGF8-203ENST00000346714 694 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
HLA-DPA1P20036 AL049795.1-201ENST00000373604 642 ntTSL 3 BASIC17.18■□□□□ 0.34
HLA-DPA1P20036 INIP-202ENST00000374236 874 ntTSL 2 BASIC17.18■□□□□ 0.34
HLA-DPA1P20036 DHRS4-203ENST00000397075 727 ntTSL 2 BASIC17.18■□□□□ 0.34
HLA-DPA1P20036 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC17.18■□□□□ 0.34
HLA-DPA1P20036 HNRNPDP1-201ENST00000439535 754 ntBASIC17.18■□□□□ 0.34
HLA-DPA1P20036 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC17.18■□□□□ 0.34
HLA-DPA1P20036 AP002490.2-201ENST00000524791 560 ntBASIC17.18■□□□□ 0.34
HLA-DPA1P20036 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC17.18■□□□□ 0.34
HLA-DPA1P20036 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC17.18■□□□□ 0.34
HLA-DPA1P20036 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC17.18■□□□□ 0.34
HLA-DPA1P20036 AC105339.3-201ENST00000560043 636 ntBASIC17.18■□□□□ 0.34
HLA-DPA1P20036 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC17.18■□□□□ 0.34
HLA-DPA1P20036 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC17.18■□□□□ 0.34
HLA-DPA1P20036 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC17.18■□□□□ 0.34
HLA-DPA1P20036 MIR1199-201ENST00000621445 119 ntBASIC17.18■□□□□ 0.34
HLA-DPA1P20036 GGT7-201ENST00000336431 2642 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
HLA-DPA1P20036 HOXC5-201ENST00000312492 1805 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
HLA-DPA1P20036 NRG1-216ENST00000523079 2359 ntTSL 2 BASIC17.18■□□□□ 0.34
HLA-DPA1P20036 EIF4G3-212ENST00000602326 6196 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
HLA-DPA1P20036 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC17.18■□□□□ 0.34
HLA-DPA1P20036 DIXDC1-208ENST00000615255 4825 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
HLA-DPA1P20036 PTGDR-201ENST00000306051 2942 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
HLA-DPA1P20036 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 41.3 ms