Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
VPS4BO75351 SH2B3-202ENST00000538307 2062 ntTSL 2 BASIC16.74■□□□□ 0.27
VPS4BO75351 SEPT9-202ENST00000423034 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC16.74■□□□□ 0.27
VPS4BO75351 POLR2M-206ENST00000494490 1648 ntTSL 5 BASIC16.74■□□□□ 0.27
VPS4BO75351 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC16.74■□□□□ 0.27
VPS4BO75351 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
VPS4BO75351 WDR90-202ENST00000315764 1454 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
VPS4BO75351 MAP3K9-206ENST00000555993 4449 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.27
VPS4BO75351 ESR2-205ENST00000358599 1899 ntTSL 2 BASIC16.73■□□□□ 0.27
VPS4BO75351 PPM1D-201ENST00000305921 4778 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
VPS4BO75351 TSPAN17-209ENST00000515708 2361 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
VPS4BO75351 DMTN-223ENST00000523782 2235 ntAPPRIS P1 TSL 5 BASIC16.73■□□□□ 0.27
VPS4BO75351 NECAB2-203ENST00000565691 2064 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
VPS4BO75351 LAD1-201ENST00000367313 2336 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
VPS4BO75351 PDLIM7-202ENST00000355841 1689 ntAPPRIS P4 TSL 1 (best) BASIC16.73■□□□□ 0.27
VPS4BO75351 TSC22D1-AS1-201ENST00000616360 2845 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
VPS4BO75351 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC16.73■□□□□ 0.27
VPS4BO75351 AL590627.1-201ENST00000626603 1910 ntTSL 2 BASIC16.73■□□□□ 0.27
VPS4BO75351 EZR-202ENST00000367075 3096 ntAPPRIS P2 TSL 1 (best) BASIC16.73■□□□□ 0.27
VPS4BO75351 ELP5-202ENST00000356683 2197 ntTSL 5 BASIC16.73■□□□□ 0.27
VPS4BO75351 TRPC6-202ENST00000348423 2448 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
VPS4BO75351 RSPH14-201ENST00000216036 1291 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
VPS4BO75351 MOSPD3-201ENST00000223054 1053 ntAPPRIS P1 TSL 2 BASIC16.73■□□□□ 0.27
VPS4BO75351 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
VPS4BO75351 STX8-201ENST00000306357 1246 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
VPS4BO75351 FGF8-203ENST00000346714 694 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
VPS4BO75351 GLIPR1L1-202ENST00000378695 885 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
VPS4BO75351 MIR940-201ENST00000401276 94 ntBASIC16.73■□□□□ 0.27
VPS4BO75351 LSM5-204ENST00000409909 740 ntTSL 2 BASIC16.73■□□□□ 0.27
VPS4BO75351 RFX3-AS1-201ENST00000423112 552 ntTSL 3 BASIC16.73■□□□□ 0.27
VPS4BO75351 HCG15-203ENST00000438190 1032 ntTSL 3 BASIC16.73■□□□□ 0.27
VPS4BO75351 FGFR1OP2-206ENST00000546072 956 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
VPS4BO75351 AC106730.1-201ENST00000566722 1090 ntBASIC16.73■□□□□ 0.27
VPS4BO75351 ABR-217ENST00000572441 563 ntTSL 4 BASIC16.73■□□□□ 0.27
VPS4BO75351 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC16.73■□□□□ 0.27
VPS4BO75351 FLT3LG-206ENST00000597551 951 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
VPS4BO75351 TST-204ENST00000622841 1105 ntAPPRIS P1 TSL 5 BASIC16.73■□□□□ 0.27
VPS4BO75351 CCNC-219ENST00000627680 896 ntTSL 5 BASIC16.73■□□□□ 0.27
VPS4BO75351 KDM5C-202ENST00000375379 5245 ntAPPRIS ALT2 TSL 5 BASIC16.73■□□□□ 0.27
VPS4BO75351 C14orf28-201ENST00000325192 2915 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
VPS4BO75351 NSUN5P1-202ENST00000421140 1535 ntBASIC16.73■□□□□ 0.27
VPS4BO75351 NSUN5P2-203ENST00000457352 1529 ntBASIC16.73■□□□□ 0.27
VPS4BO75351 NFIC-211ENST00000641145 8399 ntBASIC16.73■□□□□ 0.27
VPS4BO75351 SCAF8-201ENST00000367178 5057 ntAPPRIS P1 TSL 2 BASIC16.73■□□□□ 0.27
VPS4BO75351 DPEP1-203ENST00000421184 1647 ntAPPRIS P1 TSL 5 BASIC16.73■□□□□ 0.27
VPS4BO75351 ABHD14B-204ENST00000461108 1397 ntTSL 2 BASIC16.73■□□□□ 0.27
VPS4BO75351 EMB-204ENST00000508934 1617 ntAPPRIS ALT2 TSL 5 BASIC16.73■□□□□ 0.27
VPS4BO75351 SCNN1D-206ENST00000400928 2731 ntAPPRIS ALT2 TSL 5 BASIC16.73■□□□□ 0.27
VPS4BO75351 GABRB2-202ENST00000353437 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
VPS4BO75351 SPRYD7-201ENST00000361840 3053 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
VPS4BO75351 PIGX-202ENST00000392391 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
VPS4BO75351 SYT3-202ENST00000593901 2836 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
VPS4BO75351 HNRNPU-205ENST00000444376 6827 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.27
VPS4BO75351 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC16.73■□□□□ 0.27
VPS4BO75351 AHRR-203ENST00000505113 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
VPS4BO75351 ARHGAP44-202ENST00000340825 4211 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
VPS4BO75351 ARHGAP44-203ENST00000379672 4228 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
VPS4BO75351 TBC1D28-201ENST00000345096 2789 ntAPPRIS P1 TSL 2 BASIC16.72■□□□□ 0.27
VPS4BO75351 TTBK2-208ENST00000622375 6891 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
VPS4BO75351 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
VPS4BO75351 PRMT1-202ENST00000454376 1327 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
VPS4BO75351 GSR-201ENST00000221130 3119 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
VPS4BO75351 COQ9-201ENST00000262507 1677 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
VPS4BO75351 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
VPS4BO75351 DPY19L2P4-202ENST00000497063 2018 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
VPS4BO75351 NADK2-206ENST00000506945 1437 ntTSL 2 BASIC16.72■□□□□ 0.27
VPS4BO75351 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC16.72■□□□□ 0.27
VPS4BO75351 ALDH3A1-205ENST00000444455 1771 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
VPS4BO75351 AL031282.2-201ENST00000598846 5079 ntTSL 2 BASIC16.72■□□□□ 0.27
VPS4BO75351 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC16.72■□□□□ 0.27
VPS4BO75351 SHTN1-202ENST00000355371 5361 ntAPPRIS ALT1 TSL 2 BASIC16.72■□□□□ 0.27
VPS4BO75351 PARP9-204ENST00000471785 3040 ntAPPRIS ALT2 TSL 2 BASIC16.72■□□□□ 0.27
VPS4BO75351 MRPS34-201ENST00000177742 1040 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
VPS4BO75351 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC16.72■□□□□ 0.27
VPS4BO75351 SPIN2B-202ENST00000333933 1258 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
VPS4BO75351 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
VPS4BO75351 AL359915.2-201ENST00000425884 745 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
VPS4BO75351 KRT18P67-201ENST00000432816 1264 ntBASIC16.72■□□□□ 0.27
VPS4BO75351 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
VPS4BO75351 AL592071.1-201ENST00000611956 408 ntBASIC16.72■□□□□ 0.27
VPS4BO75351 LAMC1-201ENST00000258341 7889 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
VPS4BO75351 TTC13-202ENST00000366662 3112 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
VPS4BO75351 PFKP-202ENST00000381075 2769 ntTSL 2 BASIC16.72■□□□□ 0.27
VPS4BO75351 SARS2-201ENST00000221431 2057 ntAPPRIS P2 TSL 1 (best) BASIC16.72■□□□□ 0.27
VPS4BO75351 AC004951.4-201ENST00000454572 2076 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
VPS4BO75351 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
VPS4BO75351 KCNQ2-236ENST00000637193 2983 ntTSL 5 BASIC16.72■□□□□ 0.27
VPS4BO75351 TLE2-204ENST00000455444 2253 ntTSL 5 BASIC16.72■□□□□ 0.27
VPS4BO75351 FNDC5-201ENST00000373471 2732 ntAPPRIS ALT2 TSL 2 BASIC16.72■□□□□ 0.27
VPS4BO75351 ASPH-211ENST00000518068 2744 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
VPS4BO75351 RGS6-210ENST00000553530 5685 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
VPS4BO75351 CLIC5-202ENST00000339561 2390 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
VPS4BO75351 PLXDC2-202ENST00000377242 2822 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
VPS4BO75351 CENPN-202ENST00000305850 2481 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
VPS4BO75351 HSD11B1L-223ENST00000616276 1580 ntAPPRIS ALT2 TSL 5 BASIC16.72■□□□□ 0.27
VPS4BO75351 TCP1-203ENST00000420894 1671 ntTSL 5 BASIC16.72■□□□□ 0.27
VPS4BO75351 IQCE-217ENST00000623361 6775 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
VPS4BO75351 ZNF503-201ENST00000372524 3347 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
VPS4BO75351 ITGA3-202ENST00000320031 4888 ntAPPRIS P2 TSL 1 (best) BASIC16.71■□□□□ 0.27
VPS4BO75351 PRRT4-205ENST00000489835 2313 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 31.4 ms