Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 AC026774.1-201ENST00000503652 691 ntTSL 3 BASIC13.01□□□□□ -0.33
COL6A5A8TX70 AC106786.2-201ENST00000506859 561 ntTSL 4 BASIC13.01□□□□□ -0.33
COL6A5A8TX70 AC022903.1-201ENST00000579327 469 ntTSL 2 BASIC13.01□□□□□ -0.33
COL6A5A8TX70 SMIM22-202ENST00000586440 549 ntAPPRIS P4 TSL 1 (best) BASIC13.01□□□□□ -0.33
COL6A5A8TX70 BMS1P22-203ENST00000609679 552 ntTSL 4 BASIC13.01□□□□□ -0.33
COL6A5A8TX70 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC13.01□□□□□ -0.33
COL6A5A8TX70 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
COL6A5A8TX70 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC13.01□□□□□ -0.33
COL6A5A8TX70 SNAP47-203ENST00000366760 1446 ntAPPRIS ALT2 TSL 2 BASIC13.01□□□□□ -0.33
COL6A5A8TX70 PKIG-204ENST00000372889 1489 ntAPPRIS P1 TSL 5 BASIC13.01□□□□□ -0.33
COL6A5A8TX70 MAP2K6-209ENST00000613873 1509 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
COL6A5A8TX70 TEKT4P2-201ENST00000416067 1599 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
COL6A5A8TX70 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
COL6A5A8TX70 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
COL6A5A8TX70 KIZ-211ENST00000619574 1971 ntAPPRIS ALT2 TSL 2 BASIC13.01□□□□□ -0.33
COL6A5A8TX70 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC13.01□□□□□ -0.33
COL6A5A8TX70 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC13.01□□□□□ -0.33
COL6A5A8TX70 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
COL6A5A8TX70 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
COL6A5A8TX70 APOA1-201ENST00000236850 1227 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
COL6A5A8TX70 MUC1-202ENST00000338684 1107 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
COL6A5A8TX70 APOA1-205ENST00000375329 927 ntTSL 2 BASIC13.01□□□□□ -0.33
COL6A5A8TX70 ARL16-201ENST00000397498 1227 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
COL6A5A8TX70 RAB1A-201ENST00000398529 1198 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
COL6A5A8TX70 MUC1-218ENST00000471283 635 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
COL6A5A8TX70 AC243964.2-201ENST00000590796 829 ntTSL 5 BASIC13.01□□□□□ -0.33
COL6A5A8TX70 PLA2G4C-AS1-201ENST00000596552 568 ntTSL 3 BASIC13.01□□□□□ -0.33
COL6A5A8TX70 RN7SL828P-201ENST00000607615 303 ntBASIC13.01□□□□□ -0.33
COL6A5A8TX70 ARL16-214ENST00000621051 1181 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
COL6A5A8TX70 CR381653.1-201ENST00000622961 812 ntTSL 3 BASIC13.01□□□□□ -0.33
COL6A5A8TX70 CASP16P-204ENST00000635032 809 ntBASIC13.01□□□□□ -0.33
COL6A5A8TX70 KRT8P12-202ENST00000472924 1397 ntBASIC13.01□□□□□ -0.33
COL6A5A8TX70 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
COL6A5A8TX70 SLC22A20-204ENST00000530038 1673 ntBASIC13.01□□□□□ -0.33
COL6A5A8TX70 CADPS-219ENST00000612439 5455 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
COL6A5A8TX70 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
COL6A5A8TX70 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC13.01□□□□□ -0.33
COL6A5A8TX70 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
COL6A5A8TX70 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC13.01□□□□□ -0.33
COL6A5A8TX70 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC13.01□□□□□ -0.33
COL6A5A8TX70 CAMKK1-202ENST00000348335 3563 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
COL6A5A8TX70 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
COL6A5A8TX70 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC13□□□□□ -0.33
COL6A5A8TX70 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC13□□□□□ -0.33
COL6A5A8TX70 TRNT1-205ENST00000402675 1935 ntTSL 2 BASIC13□□□□□ -0.33
COL6A5A8TX70 NAT6-205ENST00000443842 1820 ntAPPRIS ALT2 TSL 2 BASIC13□□□□□ -0.33
COL6A5A8TX70 MUTYH-234ENST00000528013 1662 ntTSL 5 BASIC13□□□□□ -0.33
COL6A5A8TX70 GALE-216ENST00000617979 1566 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
COL6A5A8TX70 DHPS-201ENST00000210060 1363 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
COL6A5A8TX70 LDLRAD1-201ENST00000371360 785 ntAPPRIS P3 TSL 1 (best) BASIC13□□□□□ -0.33
COL6A5A8TX70 C11orf88-202ENST00000375618 712 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
COL6A5A8TX70 AC016723.1-201ENST00000430546 633 ntTSL 3 BASIC13□□□□□ -0.33
COL6A5A8TX70 FTLP1-201ENST00000449155 526 ntBASIC13□□□□□ -0.33
COL6A5A8TX70 AC104306.2-201ENST00000451877 341 ntBASIC13□□□□□ -0.33
COL6A5A8TX70 TMEM191A-209ENST00000452055 788 ntTSL 2 BASIC13□□□□□ -0.33
COL6A5A8TX70 CEP57L1-208ENST00000519095 908 ntTSL 3 BASIC13□□□□□ -0.33
COL6A5A8TX70 AP001453.3-201ENST00000545800 853 ntTSL 3 BASIC13□□□□□ -0.33
COL6A5A8TX70 CHMP4BP1-201ENST00000556017 588 ntBASIC13□□□□□ -0.33
COL6A5A8TX70 AC104758.2-201ENST00000562716 483 ntTSL 3 BASIC13□□□□□ -0.33
COL6A5A8TX70 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC13□□□□□ -0.33
COL6A5A8TX70 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
COL6A5A8TX70 PDXK-219ENST00000621478 1967 ntTSL 1 (best) BASIC13□□□□□ -0.33
COL6A5A8TX70 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC13□□□□□ -0.33
COL6A5A8TX70 ANO7L1-203ENST00000602586 1720 ntBASIC13□□□□□ -0.33
COL6A5A8TX70 NODAL-201ENST00000287139 1665 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
COL6A5A8TX70 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
COL6A5A8TX70 PNMA3-202ENST00000593810 1432 ntAPPRIS P1 BASIC13□□□□□ -0.33
COL6A5A8TX70 AGRP-201ENST00000290953 764 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
COL6A5A8TX70 NOSIP-201ENST00000339093 1000 ntAPPRIS ALT1 TSL 5 BASIC13□□□□□ -0.33
COL6A5A8TX70 C15orf48-202ENST00000396650 732 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
COL6A5A8TX70 AC012506.3-201ENST00000415245 892 ntTSL 3 BASIC13□□□□□ -0.33
COL6A5A8TX70 KDM4A-AS1-204ENST00000439057 686 ntTSL 1 (best) BASIC13□□□□□ -0.33
COL6A5A8TX70 AL356441.1-201ENST00000452618 492 ntTSL 3 BASIC13□□□□□ -0.33
COL6A5A8TX70 AC079316.1-201ENST00000548397 411 ntBASIC13□□□□□ -0.33
COL6A5A8TX70 AP005329.1-201ENST00000578800 1035 ntTSL 2 BASIC13□□□□□ -0.33
COL6A5A8TX70 AC105105.3-201ENST00000585470 646 ntTSL 5 BASIC13□□□□□ -0.33
COL6A5A8TX70 LINC01663-201ENST00000614596 535 ntTSL 5 BASIC13□□□□□ -0.33
COL6A5A8TX70 FGFR2-207ENST00000359354 1680 ntTSL 1 (best) BASIC13□□□□□ -0.33
COL6A5A8TX70 FBXL18-205ENST00000620087 2076 ntTSL 5 BASIC12.99□□□□□ -0.33
COL6A5A8TX70 CD1E-212ENST00000368167 1458 ntAPPRIS P4 TSL 1 (best) BASIC12.99□□□□□ -0.33
COL6A5A8TX70 SPSB2-203ENST00000519357 1496 ntTSL 2 BASIC12.99□□□□□ -0.33
COL6A5A8TX70 LINC00593-202ENST00000560853 1483 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
COL6A5A8TX70 MYL12B-201ENST00000237500 1210 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
COL6A5A8TX70 FTH1-201ENST00000273550 1229 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
COL6A5A8TX70 KRTAP19-3-201ENST00000334063 522 ntAPPRIS P1 BASIC12.99□□□□□ -0.33
COL6A5A8TX70 TMEM91-202ENST00000356385 944 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
COL6A5A8TX70 ABHD11-AS1-201ENST00000427153 662 ntTSL 5 BASIC12.99□□□□□ -0.33
COL6A5A8TX70 AC004898.1-201ENST00000451057 766 ntBASIC12.99□□□□□ -0.33
COL6A5A8TX70 EIF4HP1-201ENST00000453115 687 ntBASIC12.99□□□□□ -0.33
COL6A5A8TX70 RHOA-206ENST00000454011 889 ntTSL 2 BASIC12.99□□□□□ -0.33
COL6A5A8TX70 AC019257.1-202ENST00000521498 445 ntTSL 5 BASIC12.99□□□□□ -0.33
COL6A5A8TX70 FTH1-202ENST00000526640 786 ntTSL 2 BASIC12.99□□□□□ -0.33
COL6A5A8TX70 AC079296.1-201ENST00000531592 560 ntTSL 3 BASIC12.99□□□□□ -0.33
COL6A5A8TX70 IL32-231ENST00000551513 791 ntAPPRIS ALT2 TSL 3 BASIC12.99□□□□□ -0.33
COL6A5A8TX70 AC068152.1-201ENST00000575930 685 ntTSL 5 BASIC12.99□□□□□ -0.33
COL6A5A8TX70 SIRT2-219ENST00000613542 1170 ntTSL 5 BASIC12.99□□□□□ -0.33
COL6A5A8TX70 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
COL6A5A8TX70 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC12.99□□□□□ -0.33
COL6A5A8TX70 ZNF213-201ENST00000396878 3313 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
COL6A5A8TX70 BHMT2-205ENST00000521567 1537 ntTSL 2 BASIC12.99□□□□□ -0.33
Retrieved 100 of 98,524 protein–RNA pairs in 22.9 ms