Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 COQ6-201ENST00000334571 2118 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
VPS28Q9UK41 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC17.54■□□□□ 0.4
VPS28Q9UK41 MIB2-219ENST00000505820 3305 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
VPS28Q9UK41 ZGLP1-202ENST00000403903 2303 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
VPS28Q9UK41 BLCAP-201ENST00000373537 2073 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
VPS28Q9UK41 HMGCLL1-202ENST00000308161 1314 ntTSL 2 BASIC17.54■□□□□ 0.4
VPS28Q9UK41 PMS2P7-201ENST00000506558 1336 ntBASIC17.54■□□□□ 0.4
VPS28Q9UK41 HSP90B1-210ENST00000614327 1338 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
VPS28Q9UK41 SLC29A2-206ENST00000546034 2509 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
VPS28Q9UK41 EIF3L-202ENST00000406934 2282 ntTSL 2 BASIC17.54■□□□□ 0.4
VPS28Q9UK41 BCAR1-201ENST00000162330 3221 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
VPS28Q9UK41 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
VPS28Q9UK41 SMPD4-202ENST00000409031 4896 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
VPS28Q9UK41 OSGIN1-202ENST00000361711 2230 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
VPS28Q9UK41 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
VPS28Q9UK41 DPY30-201ENST00000295066 631 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
VPS28Q9UK41 DPY30-202ENST00000342166 708 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
VPS28Q9UK41 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC17.54■□□□□ 0.4
VPS28Q9UK41 AC064807.1-202ENST00000423716 936 ntTSL 2 BASIC17.54■□□□□ 0.4
VPS28Q9UK41 AFG3L1P-210ENST00000431757 569 ntTSL 4 BASIC17.54■□□□□ 0.4
VPS28Q9UK41 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC17.54■□□□□ 0.4
VPS28Q9UK41 PRSS29P-201ENST00000440800 595 ntBASIC17.54■□□□□ 0.4
VPS28Q9UK41 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC17.54■□□□□ 0.4
VPS28Q9UK41 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC17.54■□□□□ 0.4
VPS28Q9UK41 RNA5SP416-201ENST00000516838 111 ntBASIC17.54■□□□□ 0.4
VPS28Q9UK41 AP005019.1-201ENST00000545254 664 ntTSL 3 BASIC17.54■□□□□ 0.4
VPS28Q9UK41 AC025162.1-201ENST00000554022 565 ntTSL 4 BASIC17.54■□□□□ 0.4
VPS28Q9UK41 RIN3-211ENST00000557762 517 ntTSL 3 BASIC17.54■□□□□ 0.4
VPS28Q9UK41 AC092384.3-201ENST00000561980 531 ntTSL 4 BASIC17.54■□□□□ 0.4
VPS28Q9UK41 OAZ1-202ENST00000582888 969 ntAPPRIS ALT1 TSL 5 BASIC17.54■□□□□ 0.4
VPS28Q9UK41 AC099811.2-203ENST00000592574 958 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
VPS28Q9UK41 AC064836.3-201ENST00000607928 673 ntBASIC17.54■□□□□ 0.4
VPS28Q9UK41 AC244517.5-205ENST00000623615 575 ntTSL 4 BASIC17.54■□□□□ 0.4
VPS28Q9UK41 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
VPS28Q9UK41 FAM57B-201ENST00000279389 1481 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
VPS28Q9UK41 NKILA-202ENST00000614771 2598 ntBASIC17.54■□□□□ 0.4
VPS28Q9UK41 NAA50-201ENST00000240922 6135 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
VPS28Q9UK41 DOK4-201ENST00000340099 2772 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
VPS28Q9UK41 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC17.54■□□□□ 0.4
VPS28Q9UK41 SNX14-210ENST00000505648 3193 ntTSL 2 BASIC17.54■□□□□ 0.4
VPS28Q9UK41 CACNA1A-253ENST00000637927 6847 ntAPPRIS ALT2 TSL 5 BASIC17.54■□□□□ 0.4
VPS28Q9UK41 PCDHA13-201ENST00000289272 5260 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
VPS28Q9UK41 OSBPL1A-204ENST00000399443 3317 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
VPS28Q9UK41 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC17.54■□□□□ 0.4
VPS28Q9UK41 ELF3-201ENST00000359651 4994 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
VPS28Q9UK41 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
VPS28Q9UK41 KDM4B-201ENST00000159111 5593 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
VPS28Q9UK41 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
VPS28Q9UK41 NOL4L-211ENST00000621426 6577 ntAPPRIS P2 TSL 5 BASIC17.53■□□□□ 0.4
VPS28Q9UK41 VRK1-201ENST00000216639 1745 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
VPS28Q9UK41 KLK6-202ENST00000376851 1708 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
VPS28Q9UK41 IGF2-204ENST00000381406 5179 ntAPPRIS ALT1 TSL 2 BASIC17.53■□□□□ 0.4
VPS28Q9UK41 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC17.53■□□□□ 0.4
VPS28Q9UK41 GOLGA7-202ENST00000405786 1903 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
VPS28Q9UK41 PTPA-203ENST00000348141 2737 ntTSL 5 BASIC17.53■□□□□ 0.4
VPS28Q9UK41 PTPA-207ENST00000393370 2737 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
VPS28Q9UK41 GCH1-204ENST00000491895 2943 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
VPS28Q9UK41 VWA1-203ENST00000476993 4511 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
VPS28Q9UK41 FAM69C-201ENST00000343998 3671 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
VPS28Q9UK41 TAPBP-238ENST00000475304 1686 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
VPS28Q9UK41 SGCB-201ENST00000381431 4431 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
VPS28Q9UK41 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
VPS28Q9UK41 AP000355.1-201ENST00000432032 480 ntTSL 5 BASIC17.53■□□□□ 0.4
VPS28Q9UK41 ARPC4-203ENST00000433034 926 ntTSL 3 BASIC17.53■□□□□ 0.4
VPS28Q9UK41 VN2R19P-201ENST00000442399 1052 ntBASIC17.53■□□□□ 0.4
VPS28Q9UK41 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC17.53■□□□□ 0.4
VPS28Q9UK41 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC17.53■□□□□ 0.4
VPS28Q9UK41 AP000442.1-201ENST00000533552 769 ntTSL 5 BASIC17.53■□□□□ 0.4
VPS28Q9UK41 AC010654.1-201ENST00000615722 808 ntBASIC17.53■□□□□ 0.4
VPS28Q9UK41 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC17.53■□□□□ 0.4
VPS28Q9UK41 TCAF2-203ENST00000425618 2448 ntTSL 2 BASIC17.53■□□□□ 0.4
VPS28Q9UK41 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC17.53■□□□□ 0.4
VPS28Q9UK41 DUSP4-201ENST00000240100 5537 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
VPS28Q9UK41 MAP3K6-202ENST00000374040 4309 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
VPS28Q9UK41 HMOX2-217ENST00000619528 1829 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
VPS28Q9UK41 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
VPS28Q9UK41 BRPF1-201ENST00000383829 4736 ntAPPRIS ALT1 TSL 1 (best) BASIC17.53■□□□□ 0.4
VPS28Q9UK41 MEPCE-201ENST00000310512 3030 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
VPS28Q9UK41 AC093627.6-201ENST00000478759 1365 ntTSL 5 BASIC17.53■□□□□ 0.4
VPS28Q9UK41 DAPK2-202ENST00000457488 1741 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
VPS28Q9UK41 KCNQ5-212ENST00000628967 3527 ntTSL 2 BASIC17.52■□□□□ 0.4
VPS28Q9UK41 ST6GALNAC6-202ENST00000373141 2424 ntAPPRIS ALT1 TSL 2 BASIC17.52■□□□□ 0.4
VPS28Q9UK41 FOXD4L4-201ENST00000377413 2230 ntAPPRIS P1 BASIC17.52■□□□□ 0.4
VPS28Q9UK41 CCDC154-202ENST00000409671 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
VPS28Q9UK41 HPGD-213ENST00000541923 2920 ntTSL 2 BASIC17.52■□□□□ 0.4
VPS28Q9UK41 CHRM2-201ENST00000320658 1694 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
VPS28Q9UK41 ZDHHC8-202ENST00000334554 5046 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
VPS28Q9UK41 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC17.52■□□□□ 0.4
VPS28Q9UK41 PPARD-202ENST00000337400 2041 ntTSL 5 BASIC17.52■□□□□ 0.4
VPS28Q9UK41 ZNF710-201ENST00000268154 4617 ntAPPRIS P1 TSL 2 BASIC17.52■□□□□ 0.4
VPS28Q9UK41 SP3-203ENST00000418194 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
VPS28Q9UK41 RASL10B-201ENST00000603017 3205 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
VPS28Q9UK41 TOM1L1-221ENST00000575882 2507 ntAPPRIS P2 TSL 1 (best) BASIC17.52■□□□□ 0.4
VPS28Q9UK41 SLC6A9-202ENST00000360584 2330 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
VPS28Q9UK41 DNAJB2-201ENST00000336576 3176 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
VPS28Q9UK41 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
VPS28Q9UK41 HSPB1-201ENST00000248553 909 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
VPS28Q9UK41 FABP5-202ENST00000396359 986 ntTSL 5 BASIC17.52■□□□□ 0.4
VPS28Q9UK41 AP1S3-203ENST00000396654 830 ntAPPRIS P2 TSL 2 BASIC17.52■□□□□ 0.4
VPS28Q9UK41 ATP6V0CP3-201ENST00000417255 467 ntBASIC17.52■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 33.6 ms