Protein–RNA interactions for Protein: Q9NSU2

TREX1, Three-prime repair exonuclease 1, humanhuman

Predictions only

Length 369 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TREX1Q9NSU2 TOP3BP1-201ENST00000420768 1380 ntBASIC16.98■□□□□ 0.31
TREX1Q9NSU2 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC16.98■□□□□ 0.31
TREX1Q9NSU2 SGO1-201ENST00000263753 2338 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
TREX1Q9NSU2 PKN3-201ENST00000291906 3375 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
TREX1Q9NSU2 BCRP2-201ENST00000398241 1842 ntTSL 2 BASIC16.98■□□□□ 0.31
TREX1Q9NSU2 EXD3-201ENST00000340951 2872 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
TREX1Q9NSU2 CD9-203ENST00000382518 1556 ntAPPRIS P1 TSL 5 BASIC16.98■□□□□ 0.31
TREX1Q9NSU2 RBM6-210ENST00000442092 2260 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
TREX1Q9NSU2 BICD1-205ENST00000550207 1328 ntTSL 3 BASIC16.97■□□□□ 0.31
TREX1Q9NSU2 HSPA1A-201ENST00000375651 2483 ntAPPRIS P1 BASIC16.97■□□□□ 0.31
TREX1Q9NSU2 HNF1A-216ENST00000617366 2473 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
TREX1Q9NSU2 C10orf10-201ENST00000298295 2120 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
TREX1Q9NSU2 PDCD5-203ENST00000419343 1799 ntTSL 2 BASIC16.97■□□□□ 0.31
TREX1Q9NSU2 EDEM1-201ENST00000256497 6146 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
TREX1Q9NSU2 CXorf40B-205ENST00000462691 1440 ntAPPRIS ALT1 TSL 3 BASIC16.97■□□□□ 0.31
TREX1Q9NSU2 ZFP1-208ENST00000568079 1426 ntTSL 2 BASIC16.97■□□□□ 0.31
TREX1Q9NSU2 SCAMP4-201ENST00000316097 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
TREX1Q9NSU2 GYG1-201ENST00000296048 1890 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
TREX1Q9NSU2 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC16.97■□□□□ 0.31
TREX1Q9NSU2 OR6D1P-202ENST00000641007 5290 ntBASIC16.97■□□□□ 0.31
TREX1Q9NSU2 FMNL1-201ENST00000328118 2330 ntTSL 2 BASIC16.97■□□□□ 0.31
TREX1Q9NSU2 TBC1D28-201ENST00000345096 2789 ntAPPRIS P1 TSL 2 BASIC16.97■□□□□ 0.31
TREX1Q9NSU2 TVP23C-201ENST00000225576 1527 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
TREX1Q9NSU2 AC006277.1-201ENST00000624348 1610 ntBASIC16.97■□□□□ 0.31
TREX1Q9NSU2 VAC14-201ENST00000261776 3099 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
TREX1Q9NSU2 SPRYD7-202ENST00000378195 3086 ntTSL 2 BASIC16.97■□□□□ 0.31
TREX1Q9NSU2 PCDHAC2-201ENST00000289269 5963 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
TREX1Q9NSU2 UBE3A-201ENST00000232165 5051 ntAPPRIS P3 TSL 5 BASIC16.97■□□□□ 0.31
TREX1Q9NSU2 ING5-201ENST00000313552 5196 ntAPPRIS P3 TSL 1 (best) BASIC16.97■□□□□ 0.31
TREX1Q9NSU2 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
TREX1Q9NSU2 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
TREX1Q9NSU2 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC16.97■□□□□ 0.31
TREX1Q9NSU2 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
TREX1Q9NSU2 AC073621.1-201ENST00000392730 636 ntBASIC16.97■□□□□ 0.31
TREX1Q9NSU2 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC16.97■□□□□ 0.31
TREX1Q9NSU2 TTLL12-204ENST00000494035 888 ntTSL 2 BASIC16.97■□□□□ 0.31
TREX1Q9NSU2 TOLLIP-AS1-201ENST00000530897 939 ntBASIC16.97■□□□□ 0.31
TREX1Q9NSU2 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC16.97■□□□□ 0.31
TREX1Q9NSU2 AC002310.6-201ENST00000624451 1377 ntBASIC16.97■□□□□ 0.31
TREX1Q9NSU2 GRAMD1A-202ENST00000411896 2523 ntAPPRIS ALT2 TSL 2 BASIC16.97■□□□□ 0.31
TREX1Q9NSU2 PTPN18-201ENST00000175756 3669 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
TREX1Q9NSU2 PARP12-201ENST00000263549 3796 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
TREX1Q9NSU2 MYB-205ENST00000367814 3302 ntAPPRIS P3 TSL 1 (best) BASIC16.96■□□□□ 0.31
TREX1Q9NSU2 CRKL-201ENST00000354336 5325 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
TREX1Q9NSU2 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC16.96■□□□□ 0.31
TREX1Q9NSU2 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC16.96■□□□□ 0.31
TREX1Q9NSU2 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC16.96■□□□□ 0.31
TREX1Q9NSU2 FLVCR1-AS1-201ENST00000356684 2525 ntTSL 2 BASIC16.96■□□□□ 0.31
TREX1Q9NSU2 ZNF133-204ENST00000396026 2717 ntAPPRIS P3 TSL 3 BASIC16.96■□□□□ 0.31
TREX1Q9NSU2 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
TREX1Q9NSU2 POMC-203ENST00000395826 959 ntAPPRIS P1 TSL 2 BASIC16.96■□□□□ 0.31
TREX1Q9NSU2 UBE2C-206ENST00000405520 641 ntTSL 2 BASIC16.96■□□□□ 0.31
TREX1Q9NSU2 RPS2P1-201ENST00000434010 821 ntBASIC16.96■□□□□ 0.31
TREX1Q9NSU2 CHCHD3-203ENST00000448878 1038 ntTSL 5 BASIC16.96■□□□□ 0.31
TREX1Q9NSU2 EMBP1-201ENST00000458200 901 ntBASIC16.96■□□□□ 0.31
TREX1Q9NSU2 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC16.96■□□□□ 0.31
TREX1Q9NSU2 AP000721.2-201ENST00000537170 650 ntTSL 4 BASIC16.96■□□□□ 0.31
TREX1Q9NSU2 CMC2-212ENST00000565650 671 ntAPPRIS P1 TSL 2 BASIC16.96■□□□□ 0.31
TREX1Q9NSU2 ZSCAN1-203ENST00000601162 813 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
TREX1Q9NSU2 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC16.96■□□□□ 0.31
TREX1Q9NSU2 UBE2C-208ENST00000617055 705 ntTSL 3 BASIC16.96■□□□□ 0.31
TREX1Q9NSU2 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC16.96■□□□□ 0.31
TREX1Q9NSU2 ABBA01031661.1-201ENST00000634362 1253 ntBASIC16.96■□□□□ 0.31
TREX1Q9NSU2 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
TREX1Q9NSU2 ALDH3A1-212ENST00000494157 1572 ntTSL 3 BASIC16.96■□□□□ 0.31
TREX1Q9NSU2 CYMP-AS1-201ENST00000457402 2351 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
TREX1Q9NSU2 TSPAN17-209ENST00000515708 2361 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
TREX1Q9NSU2 L1CAM-203ENST00000370055 4655 ntTSL 5 BASIC16.96■□□□□ 0.31
TREX1Q9NSU2 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC16.96■□□□□ 0.3
TREX1Q9NSU2 FAM156B-207ENST00000616419 2032 ntAPPRIS P2 TSL 2 BASIC16.96■□□□□ 0.3
TREX1Q9NSU2 FAM156A-212ENST00000617970 2032 ntAPPRIS P2 TSL 2 BASIC16.96■□□□□ 0.3
TREX1Q9NSU2 AC068831.1-204ENST00000501381 1621 ntTSL 2 BASIC16.96■□□□□ 0.3
TREX1Q9NSU2 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC16.96■□□□□ 0.3
TREX1Q9NSU2 DMKN-209ENST00000429837 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.3
TREX1Q9NSU2 TFRC-202ENST00000392396 5032 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
TREX1Q9NSU2 C17orf62-201ENST00000306645 2093 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
TREX1Q9NSU2 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
TREX1Q9NSU2 TINF2-208ENST00000558566 1874 ntAPPRIS ALT2 TSL 2 BASIC16.95■□□□□ 0.3
TREX1Q9NSU2 ZDHHC2-201ENST00000262096 6377 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
TREX1Q9NSU2 KSR1-201ENST00000268763 2806 ntAPPRIS ALT2 TSL 5 BASIC16.95■□□□□ 0.3
TREX1Q9NSU2 WDR90-209ENST00000547944 1672 ntTSL 2 BASIC16.95■□□□□ 0.3
TREX1Q9NSU2 NAP1L4-201ENST00000380542 2511 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
TREX1Q9NSU2 C2orf81-206ENST00000640868 2407 ntAPPRIS ALT2 BASIC16.95■□□□□ 0.3
TREX1Q9NSU2 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
TREX1Q9NSU2 HLA-J-202ENST00000469281 1241 ntBASIC16.95■□□□□ 0.3
TREX1Q9NSU2 SLC25A6P2-201ENST00000497974 877 ntBASIC16.95■□□□□ 0.3
TREX1Q9NSU2 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC16.95■□□□□ 0.3
TREX1Q9NSU2 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC16.95■□□□□ 0.3
TREX1Q9NSU2 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC16.95■□□□□ 0.3
TREX1Q9NSU2 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC16.95■□□□□ 0.3
TREX1Q9NSU2 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC16.95■□□□□ 0.3
TREX1Q9NSU2 AC104758.1-202ENST00000568184 602 ntTSL 3 BASIC16.95■□□□□ 0.3
TREX1Q9NSU2 ANO2-212ENST00000612575 1087 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
TREX1Q9NSU2 AC092902.2-205ENST00000622381 394 ntTSL 5 BASIC16.95■□□□□ 0.3
TREX1Q9NSU2 AL139011.1-202ENST00000642063 584 ntBASIC16.95■□□□□ 0.3
TREX1Q9NSU2 HNF1A-212ENST00000544413 2014 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
TREX1Q9NSU2 SSPN-201ENST00000242729 2788 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
TREX1Q9NSU2 PLCH2-203ENST00000378486 4837 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
TREX1Q9NSU2 PLCH2-204ENST00000419816 4837 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
TREX1Q9NSU2 ZNF786-201ENST00000316286 3144 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 48.9 ms