Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 C17orf113-201ENST00000587304 3746 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
TRIM39Q9HCM9 AP3D1-201ENST00000345016 4870 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
TRIM39Q9HCM9 TBC1D20-201ENST00000354200 4466 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
TRIM39Q9HCM9 PKD1P5-201ENST00000532415 10291 ntBASIC16.92■□□□□ 0.3
TRIM39Q9HCM9 DUSP4-201ENST00000240100 5537 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
TRIM39Q9HCM9 CLN3-216ENST00000565316 1318 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
TRIM39Q9HCM9 ZNF561-AS1-204ENST00000587536 1799 ntTSL 2 BASIC16.92■□□□□ 0.3
TRIM39Q9HCM9 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
TRIM39Q9HCM9 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
TRIM39Q9HCM9 YTHDF3-212ENST00000621413 2370 ntTSL 5 BASIC16.92■□□□□ 0.3
TRIM39Q9HCM9 ARHGAP11A-201ENST00000361627 5898 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
TRIM39Q9HCM9 DLC1-203ENST00000358919 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
TRIM39Q9HCM9 EPHX2-204ENST00000518379 1959 ntAPPRIS ALT2 TSL 5 BASIC16.91■□□□□ 0.3
TRIM39Q9HCM9 HNRNPRP1-201ENST00000453465 1695 ntBASIC16.91■□□□□ 0.3
TRIM39Q9HCM9 ISLR2-203ENST00000435464 4259 ntAPPRIS P1 TSL 2 BASIC16.91■□□□□ 0.3
TRIM39Q9HCM9 ARID1A-205ENST00000457599 6268 ntAPPRIS ALT2 TSL 5 BASIC16.91■□□□□ 0.3
TRIM39Q9HCM9 PTGDR-201ENST00000306051 2942 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
TRIM39Q9HCM9 RASSF8-AS1-202ENST00000500276 2610 ntTSL 2 BASIC16.91■□□□□ 0.3
TRIM39Q9HCM9 ANKRD24-202ENST00000318934 3906 ntAPPRIS P2 TSL 5 BASIC16.91■□□□□ 0.3
TRIM39Q9HCM9 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
TRIM39Q9HCM9 AC124067.4-201ENST00000519691 2379 ntBASIC16.91■□□□□ 0.3
TRIM39Q9HCM9 AC009053.2-201ENST00000563701 2365 ntBASIC16.91■□□□□ 0.3
TRIM39Q9HCM9 MUM1-216ENST00000627377 2235 ntAPPRIS ALT2 TSL 5 BASIC16.91■□□□□ 0.3
TRIM39Q9HCM9 DPY30-201ENST00000295066 631 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
TRIM39Q9HCM9 NDUFA11-201ENST00000308961 539 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
TRIM39Q9HCM9 KLHL7-201ENST00000322275 969 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
TRIM39Q9HCM9 DPY30-202ENST00000342166 708 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
TRIM39Q9HCM9 IGKV4-1-201ENST00000390243 538 ntAPPRIS P1 BASIC16.91■□□□□ 0.3
TRIM39Q9HCM9 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC16.91■□□□□ 0.3
TRIM39Q9HCM9 MMP24-AS1-201ENST00000424358 867 ntAPPRIS P1 TSL 2 BASIC16.91■□□□□ 0.3
TRIM39Q9HCM9 PMS2P1-201ENST00000431037 1228 ntBASIC16.91■□□□□ 0.3
TRIM39Q9HCM9 VN2R19P-201ENST00000442399 1052 ntBASIC16.91■□□□□ 0.3
TRIM39Q9HCM9 AL591424.1-201ENST00000442569 1213 ntBASIC16.91■□□□□ 0.3
TRIM39Q9HCM9 MMP24-AS1-209ENST00000456790 712 ntAPPRIS P1 TSL 2 BASIC16.91■□□□□ 0.3
TRIM39Q9HCM9 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC16.91■□□□□ 0.3
TRIM39Q9HCM9 KRT18P58-201ENST00000527480 1120 ntBASIC16.91■□□□□ 0.3
TRIM39Q9HCM9 LDLRAD2-203ENST00000543870 1180 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
TRIM39Q9HCM9 AC027601.4-201ENST00000611259 610 ntBASIC16.91■□□□□ 0.3
TRIM39Q9HCM9 PHGDH-208ENST00000641023 2096 ntAPPRIS P1 BASIC16.91■□□□□ 0.3
TRIM39Q9HCM9 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
TRIM39Q9HCM9 MFGE8-201ENST00000268150 1937 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
TRIM39Q9HCM9 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.3
TRIM39Q9HCM9 PCCB-201ENST00000251654 1833 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
TRIM39Q9HCM9 TLE2-217ENST00000590536 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
TRIM39Q9HCM9 PLPPR4-202ENST00000370185 5369 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
TRIM39Q9HCM9 DNM1-202ENST00000372923 3244 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
TRIM39Q9HCM9 ZNF281-203ENST00000367353 3080 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
TRIM39Q9HCM9 DMPK-201ENST00000291270 2787 ntAPPRIS P3 TSL 5 BASIC16.9■□□□□ 0.3
TRIM39Q9HCM9 ZFP91-201ENST00000316059 5220 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
TRIM39Q9HCM9 PFN2-201ENST00000239940 2261 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
TRIM39Q9HCM9 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC16.9■□□□□ 0.3
TRIM39Q9HCM9 NSFL1C-206ENST00000476071 2800 ntTSL 5 BASIC16.9■□□□□ 0.3
TRIM39Q9HCM9 RSPH6A-201ENST00000221538 2456 ntAPPRIS P2 TSL 1 (best) BASIC16.9■□□□□ 0.3
TRIM39Q9HCM9 CEP83-AS1-201ENST00000623122 2482 ntBASIC16.9■□□□□ 0.3
TRIM39Q9HCM9 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
TRIM39Q9HCM9 FERMT2-203ENST00000395631 3369 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
TRIM39Q9HCM9 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
TRIM39Q9HCM9 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
TRIM39Q9HCM9 SYTL3-203ENST00000367081 2692 ntAPPRIS P3 TSL 5 BASIC16.9■□□□□ 0.3
TRIM39Q9HCM9 MCF2L-203ENST00000375604 6445 ntAPPRIS P3 TSL 2 BASIC16.9■□□□□ 0.3
TRIM39Q9HCM9 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
TRIM39Q9HCM9 EXD3-201ENST00000340951 2872 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
TRIM39Q9HCM9 CDH23-205ENST00000398809 4533 ntTSL 5 BASIC16.9■□□□□ 0.3
TRIM39Q9HCM9 GUK1-203ENST00000366718 1275 ntAPPRIS P3 TSL 3 BASIC16.9■□□□□ 0.3
TRIM39Q9HCM9 PIGU-202ENST00000374820 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
TRIM39Q9HCM9 ZFAND2B-207ENST00000409412 569 ntTSL 2 BASIC16.9■□□□□ 0.3
TRIM39Q9HCM9 ATP6V0CP3-201ENST00000417255 467 ntBASIC16.9■□□□□ 0.3
TRIM39Q9HCM9 AL807752.7-201ENST00000471521 989 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
TRIM39Q9HCM9 SUMO2P17-202ENST00000508743 738 ntTSL 3 BASIC16.9■□□□□ 0.3
TRIM39Q9HCM9 AP005019.1-201ENST00000545254 664 ntTSL 3 BASIC16.9■□□□□ 0.3
TRIM39Q9HCM9 MIR4751-201ENST00000578027 74 ntBASIC16.9■□□□□ 0.3
TRIM39Q9HCM9 MKNK2-212ENST00000591588 631 ntTSL 2 BASIC16.9■□□□□ 0.3
TRIM39Q9HCM9 AC010654.1-201ENST00000615722 808 ntBASIC16.9■□□□□ 0.3
TRIM39Q9HCM9 FAM197Y3-203ENST00000618346 717 ntBASIC16.9■□□□□ 0.3
TRIM39Q9HCM9 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
TRIM39Q9HCM9 FAM9B-202ENST00000362066 2047 ntTSL 2 BASIC16.9■□□□□ 0.3
TRIM39Q9HCM9 RNF7-201ENST00000273480 2763 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
TRIM39Q9HCM9 FFAR2-201ENST00000246549 2051 ntAPPRIS P1 BASIC16.9■□□□□ 0.3
TRIM39Q9HCM9 EPHA10-201ENST00000319637 2050 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
TRIM39Q9HCM9 AL109955.1-201ENST00000417346 1540 ntTSL 2 BASIC16.9■□□□□ 0.3
TRIM39Q9HCM9 PHYH-202ENST00000396913 1732 ntTSL 5 BASIC16.9■□□□□ 0.3
TRIM39Q9HCM9 PRR18-201ENST00000322583 3084 ntAPPRIS P2 BASIC16.9■□□□□ 0.3
TRIM39Q9HCM9 SELENBP1-204ENST00000426705 1928 ntTSL 2 BASIC16.9■□□□□ 0.3
TRIM39Q9HCM9 HDAC10-205ENST00000448072 2133 ntTSL 5 BASIC16.9■□□□□ 0.3
TRIM39Q9HCM9 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC16.9■□□□□ 0.3
TRIM39Q9HCM9 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC16.89■□□□□ 0.3
TRIM39Q9HCM9 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC16.89■□□□□ 0.3
TRIM39Q9HCM9 CACNA1H-206ENST00000565831 7815 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
TRIM39Q9HCM9 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC16.89■□□□□ 0.29
TRIM39Q9HCM9 PTGER3-208ENST00000370932 1841 ntAPPRIS ALT2 TSL 5 BASIC16.89■□□□□ 0.29
TRIM39Q9HCM9 WDR13-202ENST00000376729 5469 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.29
TRIM39Q9HCM9 PDE9A-205ENST00000349112 1616 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
TRIM39Q9HCM9 MIB2-201ENST00000355826 3290 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
TRIM39Q9HCM9 RUNX2-201ENST00000359524 5390 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
TRIM39Q9HCM9 GYPC-202ENST00000356887 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
TRIM39Q9HCM9 ABHD14B-206ENST00000483233 2056 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
TRIM39Q9HCM9 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
TRIM39Q9HCM9 PTHLH-205ENST00000535992 1891 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.29
TRIM39Q9HCM9 DPM3-203ENST00000368400 409 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
TRIM39Q9HCM9 HUS1B-201ENST00000380907 1025 ntAPPRIS P1 BASIC16.89■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 31.4 ms