Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 PAQR8-202ENST00000442253 4738 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
MMP28Q9H239 TMEM184A-201ENST00000297477 6276 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
MMP28Q9H239 DGCR6L-201ENST00000248879 1154 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
MMP28Q9H239 EXOC3L2-201ENST00000252482 1230 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
MMP28Q9H239 TSPY8-202ENST00000383000 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
MMP28Q9H239 TSPY2-202ENST00000383042 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
MMP28Q9H239 AP000523.1-201ENST00000398242 1049 ntBASIC15.11■□□□□ 0.01
MMP28Q9H239 TSPY3-201ENST00000424594 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
MMP28Q9H239 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC15.11■□□□□ 0.01
MMP28Q9H239 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC15.11■□□□□ 0.01
MMP28Q9H239 TSPY10-202ENST00000444056 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
MMP28Q9H239 ATP5G1P1-201ENST00000448724 379 ntBASIC15.11■□□□□ 0.01
MMP28Q9H239 ELOVL2-AS1-202ENST00000456616 903 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
MMP28Q9H239 RNF146-204ENST00000476956 884 ntTSL 2 BASIC15.11■□□□□ 0.01
MMP28Q9H239 ZNF706-204ENST00000518336 501 ntAPPRIS P1 TSL 4 BASIC15.11■□□□□ 0.01
MMP28Q9H239 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC15.11■□□□□ 0.01
MMP28Q9H239 DYNLL1-205ENST00000548342 662 ntAPPRIS P1 TSL 2 BASIC15.11■□□□□ 0.01
MMP28Q9H239 GOLGA2P7-203ENST00000557881 896 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
MMP28Q9H239 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC15.11■□□□□ 0.01
MMP28Q9H239 AC022154.1-201ENST00000600303 766 ntTSL 3 BASIC15.11■□□□□ 0.01
MMP28Q9H239 GOLGA2P10-205ENST00000618267 983 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
MMP28Q9H239 AC112497.1-201ENST00000624824 639 ntBASIC15.11■□□□□ 0.01
MMP28Q9H239 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC15.11■□□□□ 0.01
MMP28Q9H239 C21orf59-201ENST00000290155 1692 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
MMP28Q9H239 SEPT8-204ENST00000378699 2289 ntTSL 5 BASIC15.11■□□□□ 0.01
MMP28Q9H239 RSPO1-203ENST00000612451 2463 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
MMP28Q9H239 AGTPBP1-201ENST00000337006 4473 ntTSL 5 BASIC15.11■□□□□ 0.01
MMP28Q9H239 SERINC2-202ENST00000373710 2146 ntTSL 2 BASIC15.11■□□□□ 0.01
MMP28Q9H239 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
MMP28Q9H239 GAS7-210ENST00000579158 1528 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
MMP28Q9H239 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC15.11■□□□□ 0.01
MMP28Q9H239 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
MMP28Q9H239 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC15.11■□□□□ 0.01
MMP28Q9H239 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
MMP28Q9H239 RASA1-201ENST00000274376 3752 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
MMP28Q9H239 PAPLN-202ENST00000340738 5834 ntAPPRIS P2 TSL 5 BASIC15.11■□□□□ 0.01
MMP28Q9H239 TMPO-AS1-202ENST00000548760 3357 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
MMP28Q9H239 SPOCK1-202ENST00000394945 4846 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
MMP28Q9H239 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
MMP28Q9H239 HMBS-221ENST00000544387 1351 ntTSL 2 BASIC15.11■□□□□ 0.01
MMP28Q9H239 ANKMY1-207ENST00000403283 2874 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
MMP28Q9H239 SNAPC1-201ENST00000216294 2656 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
MMP28Q9H239 TMEM39B-201ENST00000336294 1813 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
MMP28Q9H239 ZP3-204ENST00000416245 1846 ntTSL 2 BASIC15.1■□□□□ 0.01
MMP28Q9H239 CHAT-203ENST00000351556 2286 ntAPPRIS ALT2 TSL 5 BASIC15.1■□□□□ 0.01
MMP28Q9H239 ATG5-210ENST00000636437 2261 ntTSL 5 BASIC15.1■□□□□ 0.01
MMP28Q9H239 TRIM73-205ENST00000450434 1425 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
MMP28Q9H239 TMC5-202ENST00000381414 4755 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
MMP28Q9H239 TRPC4AP-201ENST00000252015 3226 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
MMP28Q9H239 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
MMP28Q9H239 LMF2-202ENST00000474879 2582 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
MMP28Q9H239 ARHGAP5-205ENST00000433497 3047 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
MMP28Q9H239 LRRC57-202ENST00000397130 2384 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
MMP28Q9H239 LUC7L-201ENST00000293872 1456 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
MMP28Q9H239 SLC6A11-201ENST00000254488 4296 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
MMP28Q9H239 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC15.1■□□□□ 0.01
MMP28Q9H239 S100A16-203ENST00000368705 956 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
MMP28Q9H239 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC15.1■□□□□ 0.01
MMP28Q9H239 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
MMP28Q9H239 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC15.1■□□□□ 0.01
MMP28Q9H239 GRAMD4P1-201ENST00000435181 1110 ntBASIC15.1■□□□□ 0.01
MMP28Q9H239 AC009947.2-201ENST00000444014 672 ntBASIC15.1■□□□□ 0.01
MMP28Q9H239 MAGI2-AS3-208ENST00000446159 670 ntTSL 3 BASIC15.1■□□□□ 0.01
MMP28Q9H239 AC013402.1-201ENST00000456999 561 ntTSL 4 BASIC15.1■□□□□ 0.01
MMP28Q9H239 CCNJL-205ENST00000519673 940 ntTSL 2 BASIC15.1■□□□□ 0.01
MMP28Q9H239 AC010203.1-204ENST00000548782 407 ntBASIC15.1■□□□□ 0.01
MMP28Q9H239 TPM1-226ENST00000560959 925 ntTSL 2 BASIC15.1■□□□□ 0.01
MMP28Q9H239 AC002310.4-201ENST00000568114 377 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
MMP28Q9H239 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC15.1■□□□□ 0.01
MMP28Q9H239 NEK4P2-201ENST00000580004 1012 ntBASIC15.1■□□□□ 0.01
MMP28Q9H239 RBM42-202ENST00000586618 771 ntTSL 3 BASIC15.1■□□□□ 0.01
MMP28Q9H239 TXNL4A-211ENST00000592837 611 ntTSL 2 BASIC15.1■□□□□ 0.01
MMP28Q9H239 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
MMP28Q9H239 AC010422.3-201ENST00000597692 838 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
MMP28Q9H239 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC15.1■□□□□ 0.01
MMP28Q9H239 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC15.1■□□□□ 0.01
MMP28Q9H239 SAP130-201ENST00000259234 4140 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
MMP28Q9H239 COA5-201ENST00000328709 1754 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
MMP28Q9H239 SELENBP1-201ENST00000368868 1752 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
MMP28Q9H239 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
MMP28Q9H239 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
MMP28Q9H239 TRPM4-213ENST00000599628 1829 ntTSL 2 BASIC15.1■□□□□ 0.01
MMP28Q9H239 PIGT-221ENST00000638594 1835 ntTSL 5 BASIC15.1■□□□□ 0.01
MMP28Q9H239 P3H1-202ENST00000296388 2585 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
MMP28Q9H239 ACP5-201ENST00000218758 1630 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
MMP28Q9H239 KIAA1211-201ENST00000264229 4109 ntAPPRIS P2 TSL 2 BASIC15.1■□□□□ 0.01
MMP28Q9H239 FOXN1-203ENST00000579795 2145 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
MMP28Q9H239 AP1AR-201ENST00000274000 2902 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
MMP28Q9H239 LOXL3-203ENST00000409249 2431 ntTSL 5 BASIC15.09■□□□□ 0.01
MMP28Q9H239 SSR4-201ENST00000320857 1671 ntAPPRIS P1 TSL 2 BASIC15.09■□□□□ 0.01
MMP28Q9H239 FAM182B-201ENST00000376403 1681 ntAPPRIS P5 TSL 1 (best) BASIC15.09■□□□□ 0.01
MMP28Q9H239 PTPN11-201ENST00000351677 6101 ntAPPRIS P3 TSL 1 (best) BASIC15.09■□□□□ 0.01
MMP28Q9H239 RBBP8-201ENST00000327155 3288 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
MMP28Q9H239 SMAD6-201ENST00000288840 3835 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
MMP28Q9H239 ZNF563-201ENST00000293725 2754 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
MMP28Q9H239 CAAP1-201ENST00000333916 2791 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
MMP28Q9H239 PPP1R16B-201ENST00000299824 6251 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
MMP28Q9H239 SYT17-201ENST00000355377 3081 ntAPPRIS P3 TSL 1 (best) BASIC15.09■□□□□ 0.01
MMP28Q9H239 FAM222B-202ENST00000452648 2836 ntAPPRIS P1 TSL 2 BASIC15.09■□□□□ 0.01
MMP28Q9H239 EXT2-210ENST00000533608 3136 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 80 ms